Clone SD02419 Report

Search the DGRC for SD02419

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:19
Vector:pOT2
Associated Gene/TranscriptCG31125-RA
Protein status:SD02419.pep: gold
Preliminary Size:1541
Sequenced Size:1469

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31125 2002-04-04 Blastp of sequenced clone
CG31125 2003-01-01 Sim4 clustering to Release 3
CG31125 2008-04-29 Release 5.5 accounting
CG31125 2008-08-15 Release 5.9 accounting
CG31125 2008-12-18 5.12 accounting

Clone Sequence Records

SD02419.complete Sequence

1469 bp (1469 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095094

> SD02419.complete
CCGTGGAGCCTGCGCCCTTTTGTCGAAACAACAAAAGGACAATAAATAAC
AAGCTAAACTGGAATGGGCCACAACACAACAATTGACGCTCGCCGCCTTT
TGCGGCATCGATTTTGAAGGGGAACACATCCACAGGCACAGCTACATAAA
TCGAAAGGACACCCACGGGGATTTGCGAGTGCAAGGATCAAGGAGCAGGG
AAGGGAAAGCGAAGGCAGAACGAGTCCAGCTCGTTTTTCTGGAGCAGTTT
TGATGTCCTCAGACAGACGCTACTATTTCGGAGCGGATTTGGAGGACAAT
GAGGGTGCCATCTGCAAGGCCAACGACAACAACAACGAACAGGAAGCGGA
TAAGGACGATCCGGATGAATCGGAGTTCCTGCAGGATGTGCCCTACTCCT
CTAGCAGCATTGACCGCAGCTCGGTGGGCTCCATTCCGTGGGCGGACGAT
GCCATCAAGAAGAACCTGCTGGACTGGGAGCGGGTGGAGCGGCTGATGAG
CGGCGAGGATCCCTTGACGGAGCTTCAGGAGCCCGAGTTGCGCAACGAGA
TCGCCGACTGGCACCGAAAGTTCCCTAGCCTGCTGGGCCGCCGGACTCGA
ACGCTGCGCCACCACAGCTTCGATAGTCAGACGCGGGAGGATATTGACTC
GATTTCAAATCTTAGTCTGAACTCCCTGGACGACGACGATGATGACGAGG
AGGCGGAGGATGGATTTCTGACACCCAAGGCAGAAGAACCAGAACAGCCT
CATCACCACTCCTATTTACGGCACAGCCAGAAGAAGCTGGTGGATCTACT
GGACAGGGATCTGCGGGTTACCTCCGTTTCGGTTAGACTCCTCAAACGAC
AGCGCAGCCAGCAGAACCAGCCCCAGCTGCCCATCTCAGCCACCACCCAA
TCCTCGGCACGCCTGCGCATGCCGCCCATTCTCAATGTGCTCGATACCAA
CCGGCGCTTTCGGGGATTGCTCAACAACCGCAGCTTCGTTCAGCTCACCC
AGGTGCAGCAGAAGGAGCAGCTGCAGCATCAGAACCAGGCCAAGTCCGCC
GTGTTGCCACATCAAAGTCATCGATCGTCCGCCTGGCACATGCCCATGGC
CGCCAATCGCTTTTTTAACAACAGGAACGCGGTAGTCCTGCCCTCGCTTA
ATCTGGGCAGGCACAGCAGGGATTTGCTGGCCACCACCACGGCCACTTCG
AGCCAAACCAACTCCAGCGGCGGGGGCGGACACAACAGCCATGGCCACAG
CAACAGTTCCTCCAACCGCTCCACACTGCATCCATTTGGGGCGACCAGCG
TTTCCAGCAACACACCATCCACGGGACGATCTATCTCGGCGGCAGTTCAT
CATCCGCGAACCGAATTTGCGCCCAGCAGCGCCTTCTACATACCCTACAG
TGCCTCGAAATTCAAAGCCTTCAAGTAACCTCAAACAATAAAACTGATCT
CAAAAAAAAAAAAAAAAAA

SD02419.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31125-RA 1455 CG31125-RA 1..1455 1..1455 7275 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20476619..20478069 1451..1 7255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24653367..24654821 1455..1 7275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24394198..24395652 1455..1 7275 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:59:32 has no hits.

SD02419.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:00:47 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20476619..20478069 1..1451 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:43 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1176 253..1428 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:13:11 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1176 253..1428 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:07 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1176 253..1428 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:43 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1176 253..1428 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:39 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1176 253..1428 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:40 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1451 1..1451 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:13:10 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1451 1..1451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:07 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1450 2..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:43 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1451 1..1451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:39 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31125-RA 1..1450 2..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:47 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24653371..24654821 1..1451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:47 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24653371..24654821 1..1451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:47 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24653371..24654821 1..1451 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:07 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20479093..20480543 1..1451 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:11 Download gff for SD02419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24394202..24395652 1..1451 100   Minus

SD02419.hyp Sequence

Translation from 252 to 1427

> SD02419.hyp
MSSDRRYYFGADLEDNEGAICKANDNNNEQEADKDDPDESEFLQDVPYSS
SSIDRSSVGSIPWADDAIKKNLLDWERVERLMSGEDPLTELQEPELRNEI
ADWHRKFPSLLGRRTRTLRHHSFDSQTREDIDSISNLSLNSLDDDDDDEE
AEDGFLTPKAEEPEQPHHHSYLRHSQKKLVDLLDRDLRVTSVSVRLLKRQ
RSQQNQPQLPISATTQSSARLRMPPILNVLDTNRRFRGLLNNRSFVQLTQ
VQQKEQLQHQNQAKSAVLPHQSHRSSAWHMPMAANRFFNNRNAVVLPSLN
LGRHSRDLLATTTATSSQTNSSGGGGHNSHGHSNSSSNRSTLHPFGATSV
SSNTPSTGRSISAAVHHPRTEFAPSSAFYIPYSASKFKAFK*

SD02419.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31125-PA 391 CG31125-PA 1..391 1..391 2033 100 Plus

SD02419.pep Sequence

Translation from 252 to 1427

> SD02419.pep
MSSDRRYYFGADLEDNEGAICKANDNNNEQEADKDDPDESEFLQDVPYSS
SSIDRSSVGSIPWADDAIKKNLLDWERVERLMSGEDPLTELQEPELRNEI
ADWHRKFPSLLGRRTRTLRHHSFDSQTREDIDSISNLSLNSLDDDDDDEE
AEDGFLTPKAEEPEQPHHHSYLRHSQKKLVDLLDRDLRVTSVSVRLLKRQ
RSQQNQPQLPISATTQSSARLRMPPILNVLDTNRRFRGLLNNRSFVQLTQ
VQQKEQLQHQNQAKSAVLPHQSHRSSAWHMPMAANRFFNNRNAVVLPSLN
LGRHSRDLLATTTATSSQTNSSGGGGHNSHGHSNSSSNRSTLHPFGATSV
SSNTPSTGRSISAAVHHPRTEFAPSSAFYIPYSASKFKAFK*

SD02419.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17758-PA 390 GF17758-PA 1..390 1..391 1188 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12330-PA 392 GG12330-PA 1..392 1..391 1987 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19132-PA 446 GH19132-PA 61..446 29..391 781 53.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31125-PA 391 CG31125-PA 1..391 1..391 2033 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23589-PA 439 GI23589-PA 2..439 3..391 863 55.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13870-PA 441 GL13870-PA 2..441 3..391 898 60.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16027-PA 441 GA16027-PA 2..441 3..391 907 60.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23471-PA 310 GM23471-PA 1..310 82..391 1581 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18278-PA 391 GD18278-PA 1..391 1..391 2022 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23565-PA 422 GJ23565-PA 2..422 3..391 833 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12119-PA 460 GK12119-PA 79..460 41..391 812 57.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10783-PA 393 GE10783-PA 1..393 1..391 2006 96.9 Plus