Clone SD02426 Report

Search the DGRC for SD02426

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:26
Vector:pOT2
Associated Gene/TranscriptPep-RA
Protein status:SD02426.pep: validated full length
Sequenced Size:2427

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6143 2002-11-14 Blastp of sequenced clone
Pep 2008-04-29 Release 5.5 accounting
Pep 2008-08-15 Release 5.9 accounting
Pep 2008-12-18 5.12 accounting

Clone Sequence Records

SD02426.complete Sequence

2427 bp (2427 high quality bases) assembled on 2002-11-14

GenBank Submission: BT001867

> SD02426.complete
TAATATTGGATAGGCGGAGTGTTTAGACAAGGGCGGCCATCTTTCTGAAG
TGAGGAAAACTGTAGTCCAAGTAGTCCAGTCATTTTGACAAATCGCCGTT
GCAACACCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTAGTGAATAAC
GCAAAGGTCAACGGCAACATGGCTTTCCGTGGTAACCAGAACCGCAACCG
CAATTTCGGAGGTGGCAACAACAACTATGGTGGACCCATGGGCGCCAACC
GCATGGGCGGTATGAACATGTCGCCTTGGGAATCGCAGAATCCCGGCGGC
GGACAGTTTGGTAACAACATGCGACAGGGTGGCGGTCAGATGAACGCCCA
GGCCATCAACTTGGCCAACAATCTGCTGAACAATCTGTTCAGGAACCAGA
ATCCACCATCGCTTCTCGACTTGCCCCGCGGCGGCGGTGGCATGGGAAAT
CGCAACCAACGTGGTGGCCCGCCCTACCAAGGAGTCTCCATACGCTAGTG
TGCCGAACGACATGTTCTACTGTCATCTGTGCAAGAAGCACATGTGGGAT
GCCAACTCTTTCGAGAACCACATCAAGGGCCGCACCCATCTGATGATGCG
TGAGGGCATTGAGGAGAGCTATCGCCTCAAGGCCAACATGATCCGTCAGG
AGGCTAAGATCGCAGAGCAGCTCAAGTCGATCGAGTTTGACCGCTTGAAG
CGCATGGGCAAAAGCAAGCAGCGTCAGCTGGACTACTGCACCATGTGCGA
CCTGAACTTCCATGGTCACATCTCGACCCATCGCAAGTCGGAGGGACATT
TGCAGCTGAAGAAGTTCTTGCACCCCAAGTGCATTGAGTGCAACAAGGAG
TTCGCCACTCGCATTGACTACGATACTCATCTGCTGTCCGCCGAGCATCT
GAAGAAGGCTGCCGAGAACAACACCAAGGTGGGTGAGCGCAAGCGCCAGA
CCTTGCCCATCAGCACCGAAGAAGAGGAGACCCGCGATTTGCGCCTGCCC
CAGAAGCGCAAGAAGAAGCCGGTCAAGAAGGAGGGCGAAGCAGCCGATGG
CGAGGCTAAGAAGGAGGGTGCCGGCGATGGCGAGGGTGCCGAAGGTGATG
AAGCCGAGGGAGAAGAGGCCAAGGAGGGTGAGGAAGCTGCTGACGAGACA
AAGGAGGGCGATGAGCTAAACGAGAGCCAAGAGGAAGAGGAAGTGGCACT
GCCCGTGGACCCCGAGGACTGCATCCTTGACTTCAACGACGGCGATGAGA
TCCCCAGCGAGGTGGATACCCGCCTACCTAAGTACAACTGGCAGCGTGCT
GTCGGTCCCGGTCTGATCTCCAAGCTGGAGTGCTATGAGTGCTCGGTGTG
CAGCAAGTTCTTCGACACCGAGGTGACCGCCGAGATTCACTCCCGTACGG
CGACTCATCACCGCAACTTCTTGAAGTTTATCAACGAGAAATCAAGCGAT
ACCAAGATCGCACAGAAGCGCGCAGCTGCCGCCCTGGAGGAGAATGAGCG
TAAGAAGCGCAAGGTTGAGGAGGCAGAGGCTCCGGCTGCCGAGGGCGCCG
CCGAGGAAACCACCGAAGGCGCTGAGGGTGAGCTGTACGATCCATCGGAA
GCCACTGGCGATGACGAGGACGTGGAGATGGTGGATGATAATGCTGAGGG
CGAGGGCGAAGGCGAAGGTGACGAGGAAGCCGAGGCTGAGGTCGAGGAAG
ATGGCGCCGGCCAGGACAACGGCGAAGAGGAGATGGAAGCCCAGGAGGAA
GAGGGTCAGGAGGGCGAGCAAGAGCCCGAACCTGAGCCAGCTCCAGTCCA
AACTCCTGCCCCGGCTGAACCTGCACCACCAGCCAAGACCCCAGCCAAGA
CTCCGACCAAGGCAGCTGCTCCAGCCGCTGTTGCCAGTCCCGCAGCTGCG
GCAACGTCGGCAGACGCCTCTCCATCTCCGGCCAAGAAGGCAACGCCTGC
TCGCGCTGCCGCCGGAGCCAAGGCCACGCCGCAGCGACAACGCGCCCGCG
GTCGCTACAATCGCTACTAAGTAGACGTCGAAGGAATTCGTAATTTAACA
TAACATAAACCTTAATATACAAGAAAAAATTTACATTCACGCCCAGGAGG
AGGATGAAGAAAGAACAGATCAAATCGATCTCTTCCCGCAATTTGACATT
TGCATCCCAATTTGCATATACACTGAATGAATGGAAACTGAGAAGAAGAC
GGTCAACTTTTAGTTGAAACAGTTGAATATATTGTACGACGAAGCTTCTT
GAAACTGACGAGGGAGAACACAAACAAGTTAATTGAATCGAGAATCGTAT
TACCTACCCGATTCCCCCCTCCCAGAACGCATACCATGCCAGCCAGCGAA
CCAATCATTCAACTTATGTAATCATATAAATTCTATAATAAACAAAGAAA
CAAAACTAAAAAAAAAAAAAAAAAAAA

SD02426.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-RA 2637 Pep-RA 69..2476 1..2408 11965 99.7 Plus
Pep-RB 2985 Pep-RB 921..2858 471..2408 9630 99.7 Plus
Pep-RC 2970 Pep-RC 872..2809 471..2408 9630 99.7 Plus
Pep-RC 2970 Pep-RC 172..642 1..471 2340 99.7 Plus
Pep-RB 2985 Pep-RB 328..691 108..471 1805 99.7 Plus
Pep-RB 2985 Pep-RB 120..227 1..108 540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17627699..17629635 2407..471 9625 99.8 Minus
chr3L 24539361 chr3L 17632958..17633321 471..108 1805 99.7 Minus
chr3L 24539361 chr3L 17634486..17634592 107..1 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17638117..17640054 2408..471 9630 99.8 Minus
3L 28110227 3L 17643363..17643726 471..108 1805 99.7 Minus
3L 28110227 3L 17644891..17644997 107..1 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17631217..17633154 2408..471 9630 99.7 Minus
3L 28103327 3L 17636463..17636826 471..108 1805 99.7 Minus
3L 28103327 3L 17637991..17638097 107..1 535 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:54:59 has no hits.

SD02426.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:56:22 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17627699..17629634 472..2407 99 <- Minus
chr3L 17632958..17633321 108..471 99 <- Minus
chr3L 17634486..17634592 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:45 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 1..306 169..471 98 -> Plus
Pep-RC 534..2082 472..2020 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:12 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RD 534..2082 472..2020 99   Plus
Pep-RD 1..306 169..471 98 -> Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:31 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..375 100..471 97 -> Plus
Pep-RB 603..2151 472..2020 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:27 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 1..306 169..471 98 -> Plus
Pep-RC 534..2082 472..2020 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:05 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..375 100..471 97 -> Plus
Pep-RB 603..2151 472..2020 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:23:09 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RA 35..2441 1..2407 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:12 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RA 56..2462 1..2407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:31 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RA 40..2446 1..2407 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:27 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RA 35..2441 1..2407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:05 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RA 40..2446 1..2407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:22 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 472..2407 99 <- Minus
3L 17643363..17643726 108..471 99 <- Minus
3L 17644891..17644997 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:22 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 472..2407 99 <- Minus
3L 17643363..17643726 108..471 99 <- Minus
3L 17644891..17644997 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:22 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 472..2407 99 <- Minus
3L 17643363..17643726 108..471 99 <- Minus
3L 17644891..17644997 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:31 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17631218..17633153 472..2407 99 <- Minus
arm_3L 17636463..17636826 108..471 99 <- Minus
arm_3L 17637991..17638097 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:43 Download gff for SD02426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17631218..17633153 472..2407 99 <- Minus
3L 17636463..17636826 108..471 99 <- Minus
3L 17637991..17638097 1..107 100   Minus

SD02426.pep Sequence

Translation from 511 to 2019

> SD02426.pep
MFYCHLCKKHMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKI
AEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLK
KFLHPKCIECNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPI
STEEEETRDLRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEG
EEAKEGEEAADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSE
VDTRLPKYNWQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHH
RNFLKFINEKSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEET
TEGAEGELYDPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAG
QDNGEEEMEAQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTK
AAAPAAVASPAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYN
RY*

SD02426.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23899-PA 713 GF23899-PA 219..583 1..366 1584 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15796-PA 713 GG15796-PA 215..713 1..502 1841 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15349-PA 737 GH15349-PA 218..590 1..375 1611 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-PD 693 CG6143-PD 192..693 1..502 2628 100 Plus
Pep-PC 693 CG6143-PC 192..693 1..502 2628 100 Plus
Pep-PB 716 CG6143-PB 215..716 1..502 2628 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12952-PA 741 GI12952-PA 222..589 1..371 1552 89.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25230-PA 293 GL25230-PA 1..291 43..336 1210 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23732-PA 738 GA23732-PA 231..738 1..502 1643 82 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12391-PA 716 GD12391-PA 215..716 1..502 2603 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13096-PA 723 GJ13096-PA 219..585 1..371 1491 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22509-PA 685 GK22509-PA 193..685 1..502 1832 76 Plus
Dwil\GK10796-PA 766 GK10796-PA 234..666 1..413 1571 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22133-PA 715 GE22133-PA 215..587 1..373 1653 97.6 Plus

SD02426.hyp Sequence

Translation from 511 to 2019

> SD02426.hyp
MFYCHLCKKHMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKI
AEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLK
KFLHPKCIECNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPI
STEEEETRDLRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEG
EEAKEGEEAADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSE
VDTRLPKYNWQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHH
RNFLKFINEKSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEET
TEGAEGELYDPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAG
QDNGEEEMEAQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTK
AAAPAAVASPAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYN
RY*

SD02426.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-PD 693 CG6143-PD 192..693 1..502 2628 100 Plus
Pep-PC 693 CG6143-PC 192..693 1..502 2628 100 Plus
Pep-PB 716 CG6143-PB 215..716 1..502 2628 100 Plus