Clone SD02428 Report

Search the DGRC for SD02428

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:28
Vector:pOT2
Associated Gene/TranscriptNiPp1-RA
Protein status:SD02428.pep: gold
Preliminary Size:1405
Sequenced Size:1326

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8980 2001-01-01 Release 2 assignment
CG8980 2001-11-29 Blastp of sequenced clone
CG8980 2003-01-01 Sim4 clustering to Release 3
NiPp1 2008-04-29 Release 5.5 accounting
NiPp1 2008-08-15 Release 5.9 accounting
NiPp1 2008-12-18 5.12 accounting

Clone Sequence Records

SD02428.complete Sequence

1326 bp (1326 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069781

> SD02428.complete
TATAAACTTACCTTTTACTTAAGTTAAAAGTATGGCTAACAGCTACGACA
TACCCAGTTGGGCTGGAAAACCGCCCACTGGCTTACATCTGGATGTGCTA
AAGGACGACAAACTAGTACAAAAACTGATGGTGGATGAAAAAAGATGCTA
TCTATTTGGTCGCAACAGTCAAATGAACGACTTCTGCATAGACCATGCCT
CTTGTTCGCGGGTCCACTCGGCTTTTGTCTACCACAAGCACCTCAACATA
GCCTACCTCGTGGATCTGGGGTCCACTCATGGCACCTTTATTGGAACACT
CAGATTGGAAGCGCACAAGCCCACACAGCTGCAGATTAATAGCACCTTCC
ACTTTGGGGCTTCTACCCGGAACTACATACTCAGGGAACGACCCTCTGGC
CACCACAGCAACATCATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGG
CGCTCTCCTGGGCCTGCCCGAAAGCCAAACGGAGCTTGATAATCTTACAG
AATACAACACGGCCCACAATCGGCGCATCTCAATGCTGGGCATCGATGAT
GATACCAATATGCGAAAGCAAAACGCCTTGAAACAGGGACGGCGCACTCG
AAATGTCACATTTAACGATGAGGAGATTGTCATCAATCCTGAGGATGTGG
ATCCTAATGTGGGACGCTTCAGGAACTTGGTACAAACCACTGTGGTGCCC
GCCAAGAGGGCACGCTGCGACGTCAACCATATGGGCATCCATTCGGGCAA
CAGCAGTTTGTCCAGTGCCAATGCCGCACATGTACACCAAATGTTCCAGC
AGAGCCTAGTTGACATGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAAT
GCGGTGCTCCACTCGCCTACTAATTCCCTATATCAAGGTCTACCGGCCGA
AATGCATGGCAAGGGTGACCTAGAGCCCATCTCCCCGCTGAGCATTGGTT
CCAAGTTGGGCCTATTGCTCCCGAATCCTGCGCCTGAAGTGCTGCCAGTC
TATGACGAAGCTGTGGAGACCTCGACATTGGCTCAAAAGTTGGCCGTCGC
TAATGCAAACGTTCGTCGCTTTGGTGAGGATCCGCATGACTCGAGTGGCG
AAGGCGATTCGCTGTGCCCACAGAAAAAGAAATACGCCAAGGAAGCATGG
CCAGGTCGCAAGCCCATGTTGGGGCAGCTGTAATTGCGTATTAACAAAAT
AATTAAGATTCCACCTACGATTTTCTCAAGCATATGATTGACAACACACT
CTGGAGTAATATTTGTTTATTAGACTTTTAACGTAAAACAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

SD02428.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-RA 1495 NiPp1-RA 137..1417 13..1293 6300 99.4 Plus
CG6796-RA 1516 CG6796-RA 1473..1516 1293..1250 220 100 Minus
CG6796.a 1524 CG6796.a 1481..1524 1293..1250 220 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12891080..12891650 1061..491 2855 100 Minus
chr2R 21145070 chr2R 12890792..12891020 1289..1061 1145 100 Minus
chr2R 21145070 chr2R 12891712..12891926 490..276 1075 100 Minus
chr2R 21145070 chr2R 12891982..12892197 275..60 1065 99.5 Minus
chr2R 21145070 chr2R 12892258..12892318 61..1 305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17003851..17004421 1061..491 2795 99.3 Minus
2R 25286936 2R 17003559..17003791 1293..1061 1165 100 Minus
2R 25286936 2R 17004753..17004968 275..60 1065 99.5 Minus
2R 25286936 2R 17004483..17004697 490..276 1045 99.1 Minus
2R 25286936 2R 17005029..17005077 61..13 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17005050..17005620 1061..491 2795 99.2 Minus
2R 25260384 2R 17004758..17004990 1293..1061 1165 100 Minus
2R 25260384 2R 17005952..17006167 275..60 1065 99.5 Minus
2R 25260384 2R 17005682..17005896 490..276 1045 99 Minus
2R 25260384 2R 17006228..17006276 61..13 245 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:59:35 has no hits.

SD02428.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:00:48 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12890792..12891019 1062..1289 100 <- Minus
chr2R 12891080..12891650 491..1061 100 <- Minus
chr2R 12891712..12891926 276..490 100 <- Minus
chr2R 12891982..12892196 61..275 99 <- Minus
chr2R 12892259..12892318 1..60 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:46 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1152 32..1183 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:40 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1152 32..1183 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:11 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1152 32..1183 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:42 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1152 32..1183 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:43 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1152 32..1183 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:15 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1299 1..1289 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:39 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1299 1..1289 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:11 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 51..1349 1..1289 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:42 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 1..1299 1..1289 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:43 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 51..1349 1..1289 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:48 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17004753..17004967 61..275 99 <- Minus
2R 17003563..17003790 1062..1289 100 <- Minus
2R 17003851..17004421 491..1061 99 <- Minus
2R 17004483..17004697 276..490 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:48 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17004753..17004967 61..275 99 <- Minus
2R 17003563..17003790 1062..1289 100 <- Minus
2R 17003851..17004421 491..1061 99 <- Minus
2R 17004483..17004697 276..490 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:48 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17004753..17004967 61..275 99 <- Minus
2R 17003563..17003790 1062..1289 100 <- Minus
2R 17003851..17004421 491..1061 99 <- Minus
2R 17004483..17004697 276..490 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:11 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12891068..12891295 1062..1289 100 <- Minus
arm_2R 12891356..12891926 491..1061 99 <- Minus
arm_2R 12891988..12892202 276..490 99 <- Minus
arm_2R 12892258..12892472 61..275 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:53 Download gff for SD02428.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17004762..17004989 1062..1289 100 <- Minus
2R 17005050..17005620 491..1061 99 <- Minus
2R 17005682..17005896 276..490 99 <- Minus
2R 17005952..17006166 61..275 99 <- Minus

SD02428.pep Sequence

Translation from 31 to 1182

> SD02428.pep
MANSYDIPSWAGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMND
FCIDHASCSRVHSAFVYHKHLNIAYLVDLGSTHGTFIGTLRLEAHKPTQL
QINSTFHFGASTRNYILRERPSGHHSNIMEDLPLSETSDGALLGLPESQT
ELDNLTEYNTAHNRRISMLGIDDDTNMRKQNALKQGRRTRNVTFNDEEIV
INPEDVDPNVGRFRNLVQTTVVPAKRARCDVNHMGIHSGNSSLSSANAAH
VHQMFQQSLVDMKQQHREMPPPNAVLHSPTNSLYQGLPAEMHGKGDLEPI
SPLSIGSKLGLLLPNPAPEVLPVYDEAVETSTLAQKLAVANANVRRFGED
PHDSSGEGDSLCPQKKKYAKEAWPGRKPMLGQL*

SD02428.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13433-PA 382 GF13433-PA 1..382 1..383 1878 91.2 Plus
Dana\GF22145-PA 425 GF22145-PA 272..403 5..131 173 30.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22227-PA 387 GG22227-PA 1..387 1..383 1970 95.3 Plus
Dere\GG19762-PA 415 GG19762-PA 262..385 5..117 182 32.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22943-PA 406 GH22943-PA 1..406 1..383 1661 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-PA 383 CG8980-PA 1..383 1..383 2025 100 Plus
CG17168-PA 421 CG17168-PA 268..399 5..131 168 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18434-PA 398 GI18434-PA 1..398 1..383 1669 80.2 Plus
Dmoj\GI21565-PA 493 GI21565-PA 338..469 5..131 170 30.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11611-PA 385 GL11611-PA 1..385 1..383 1736 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21451-PA 385 GA21451-PA 1..385 1..383 1736 87.6 Plus
Dpse\GA27539-PA 433 GA27539-PA 280..411 5..131 169 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20014-PA 383 GM20014-PA 1..383 1..383 2054 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25503-PA 384 GD25503-PA 1..384 1..383 2039 98.7 Plus
Dsim\GD15469-PA 422 GD15469-PA 269..392 5..117 174 31.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21519-PA 411 GJ21519-PA 1..411 1..383 1680 78.4 Plus
Dvir\GJ16691-PA 488 GJ16691-PA 331..462 5..131 172 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19568-PA 385 GK19568-PA 1..385 1..383 1570 78.6 Plus
Dwil\GK25724-PA 480 GK25724-PA 327..450 5..117 172 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14224-PA 386 GE14224-PA 1..386 1..383 2004 96.9 Plus
Dyak\GE15240-PA 422 GE15240-PA 269..392 5..117 177 31.5 Plus

SD02428.hyp Sequence

Translation from 61 to 1182

> SD02428.hyp
AGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMNDFCIDHASCSR
VHSAFVYHKHLNIAYLVDLGSTHGTFIGTLRLEAHKPTQLQINSTFHFGA
STRNYILRERPSGHHSNIMEDLPLSETSDGALLGLPESQTELDNLTEYNT
AHNRRISMLGIDDDTNMRKQNALKQGRRTRNVTFNDEEIVINPEDVDPNV
GRFRNLVQTTVVPAKRARCDVNHMGIHSGNSSLSSANAAHVHQMFQQSLV
DMKQQHREMPPPNAVLHSPTNSLYQGLPAEMHGKGDLEPISPLSIGSKLG
LLLPNPAPEVLPVYDEAVETSTLAQKLAVANANVRRFGEDPHDSSGEGDS
LCPQKKKYAKEAWPGRKPMLGQL*

SD02428.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-PA 383 CG8980-PA 11..383 1..373 1967 100 Plus
CG17168-PA 421 CG17168-PA 274..399 1..121 161 31.1 Plus