Clone SD02746 Report

Search the DGRC for SD02746

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:46
Vector:pOT2
Associated Gene/TranscriptCG14767-RA
Protein status:SD02746.pep: gold
Preliminary Size:2266
Sequenced Size:2131

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14767 2001-01-01 Release 2 assignment
CG14767 2001-10-10 Blastp of sequenced clone
CG14767 2003-01-01 Sim4 clustering to Release 3
CG14767 2008-04-29 Release 5.5 accounting
CG14767 2008-08-15 Release 5.9 accounting
CG14767 2008-12-18 5.12 accounting

Clone Sequence Records

SD02746.complete Sequence

2131 bp (2131 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061575

> SD02746.complete
ATTAGTGCTCACGGGTTTTCGTGCTGCGCAGCAGTTAAATAAAATTGAAT
ACATCAAGAGCTGCAGATATAAATCGGAGTTGAAAACCAGTGCAAGTTGC
ATTGGCCCACAAATCAAAGCCGCAGTTTCGTGGGGCGTGCAATGTTTAGG
ATCCACCTCAAGATGGGTCCCCAACGCAACCAGCTCCACAGCAACAACAA
CAATGGTGCCGCCGGAAGTAGCAGCAGCACCGGAAACCGTCACCTGAAGG
AGTTCACCTGCTGCTTCGGCCTGCATGTCCACACGGCCACTTTGATGATC
GGATTGTGGCACCTGTTCTTGAACATATTGGCGCTAAGCGTTCTAGCGGT
CATATGGCGCAATCCGGAGATGATGGACGAACTGGAAGGTGGCACCCACG
ACTACACCGTGGATCTGAGTGCACCGGCCCTACCCACGCCCCTTAGCAAG
GTCGAACCGCCCTACGCCTACCGTGACCACTCCCTCAACTATCAGAACTT
CGATATGGGCGGACTGGTGTGCACCTGCATGATAGCCATTACACTGATGA
TGATCTACGGAACCATCAAGGGAAAACCCTCCCACCTGTTGCCGTTCTTC
TGTTTGCAATTGTTTGATTTCGCTATTACAACTCTCACCGCCGCTGGATA
TCTGTGCTACCTGCAGGCCATTCACAGCATCATTGCCGAGTCGCATCGCT
TGCCGTGGCGCGAGAAGCTGCTAGAACTACCACCTGAGGAGCTAGTTGTT
GTTGTCCTGGTCGTATTCATCTGCATTGTGTTTCTAAAGGCCTATTGCAT
TGGTATCGTTTGGCGCTGCTACAAGTACTTGACGCTCCGTCAGCAACACG
TTCGCACCCTGTTCCCCTTCCTGGAGCCACCGACTGGAGTCCACAGTGTT
GGCGGAACCTTTGGTGCCGAAGAGCGGTCTTACTCCACTCTGTTGCCCAA
TTACGATGAAGCGATTGCCCAGTACTTGAAGCAGGCACCACCGCCATCTT
ATCAGGTGGCCATGTCAAACTACGAAGAGGGTGAAGACGCAGCTGTTGGA
GGTGCGGAGGTTAATCCTTCGGTGGCCCCTCTCTTCGTGGCCCTTGGAGC
AGCCACTACCGCGAACGTAGCCTCCAACACGGATGACAACATGGATAATA
ACAATGATCAGCCGAACAATAACAACACTATGCATGTCAATGCCAATACG
CCACCAATGCGCCGCAGCGATGCAGCTGTAAACGCTAATGTCGACGAGGA
AGCGGACGATTTGGAGGTTATTGACGCTGGCGTTGATGTAATCGGTGGCA
TTCCGCCTCCTCCGCCCTACAACGACGTTGCCGATGCCCAGGTGCAAGTG
CCATCGCAATCGCCGCTGCATCGCCAGCCAAACATCCCGGGACAAGTATT
CGGCGGACGCGACGAAAGCCAGGCTTAAACAGTACTTTCGACTGGATTGC
TTCTCATGGCGAGTGGGTTGTGATCAGCGGTGACCACCCCTCTCCCATCC
TCTTCTTGCCCAGATGATCTGGTTTCTGGTCCCTCATTTCGCAGCTATCA
TTCCCAGGCACACATACACCTTCTTAATGGTTGCTTCAATGTATTGAACA
CTGTTTTTAGAAAAACGAAACGCAAACAAGTTTTCGCTATTAGCCATCGC
TCATTATTGTTGTTTAACGTACAACTAAGACGCTCTAGTTGCTGCTAATT
TAGTAAACAAAAGCATTAAAGCCAAAAACATATTGTGATGCTGGCGAGGA
AAGCATCAATTCCTTTTCGGCCGCATCTGACCCGATTTTAGCTGCAACAA
TCTGTTAGAACGTTTTTCATTTGGCCCGAACTAGCCTGAGAAGTTCGGAT
ATTGTAGGCCCAAGTAGTTGTTACCAGAGAGTGTCGCTGGCATTGTAGAC
ACCTTTACGATGTTCTTTGTTTTAAGTTATCTCGTAAGACTATGCATATT
GAATACCGTGTACTGAATTCAGAGCACAGGCAGACATAATCCATTAATTA
TGATGATATTACCAGCAACAGTAAAGTTTTATGTGTGTACAATATCTAAA
TGTATACTGTGTACTAAATATGCAAAGATATTCGAATAAAAATTAGTTTA
TATTTAAAAAAAAAAAAAAAAAAAAAAAAAA

SD02746.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-RA 2177 CG14767-RA 68..2174 1..2107 10520 99.9 Plus
CG14767-RB 2377 CG14767-RB 760..2374 493..2107 8060 99.9 Plus
CG14767-RC 2189 CG14767-RC 572..2186 493..2107 8060 99.9 Plus
CG14767-RC 2189 CG14767-RC 68..560 1..493 2465 100 Plus
CG14767-RB 2377 CG14767-RB 373..748 118..493 1880 100 Plus
CG14767-RB 2377 CG14767-RB 3..121 1..119 595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4605596..4607068 2105..633 7365 100 Minus
chr2R 21145070 chr2R 4610836..4611033 315..118 990 100 Minus
chr2R 21145070 chr2R 4607434..4607612 493..315 895 100 Minus
chr2R 21145070 chr2R 4607225..4607363 632..494 695 100 Minus
chr2R 21145070 chr2R 4611285..4611403 119..1 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8718015..8719489 2107..633 7360 99.9 Minus
2R 25286936 2R 8723257..8723454 315..118 990 100 Minus
2R 25286936 2R 8719855..8720033 493..315 895 100 Minus
2R 25286936 2R 8719646..8719784 632..494 695 100 Minus
2R 25286936 2R 8723706..8723824 119..1 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8719214..8720688 2107..633 7360 99.9 Minus
2R 25260384 2R 8724456..8724653 315..118 990 100 Minus
2R 25260384 2R 8721054..8721232 493..315 895 100 Minus
2R 25260384 2R 8720845..8720983 632..494 695 100 Minus
2R 25260384 2R 8724905..8725023 119..1 595 100 Minus
Blast to na_te.dros performed 2019-03-16 14:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2388 169..243 127 65.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 136..196 168..227 122 68.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9166..9226 168..227 122 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..6914 172..264 114 61.9 Plus

SD02746.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:41 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4607434..4607611 316..493 100 <- Minus
chr2R 4610836..4611031 120..315 100 <- Minus
chr2R 4611285..4611403 1..119 100   Minus
chr2R 4605596..4607068 633..2105 100 <- Minus
chr2R 4607225..4607363 494..632 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:09 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 142..1428 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:39 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 142..1428 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:15 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 142..1428 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:32 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 142..1428 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:56 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 142..1428 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:47 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 14..2118 1..2105 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:39 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 14..2118 1..2105 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:15 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 16..2120 1..2105 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:33 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 14..2118 1..2105 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:56 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 16..2120 1..2105 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:41 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8718017..8719489 633..2105 99 <- Minus
2R 8719646..8719784 494..632 100 <- Minus
2R 8719855..8720032 316..493 100 <- Minus
2R 8723257..8723452 120..315 100 <- Minus
2R 8723706..8723824 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:41 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8718017..8719489 633..2105 99 <- Minus
2R 8719646..8719784 494..632 100 <- Minus
2R 8719855..8720032 316..493 100 <- Minus
2R 8723257..8723452 120..315 100 <- Minus
2R 8723706..8723824 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:41 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8718017..8719489 633..2105 99 <- Minus
2R 8719646..8719784 494..632 100 <- Minus
2R 8719855..8720032 316..493 100 <- Minus
2R 8723257..8723452 120..315 100 <- Minus
2R 8723706..8723824 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:15 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4605522..4606994 633..2105 99 <- Minus
arm_2R 4607151..4607289 494..632 100 <- Minus
arm_2R 4607360..4607537 316..493 100 <- Minus
arm_2R 4610762..4610957 120..315 100 <- Minus
arm_2R 4611211..4611329 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:40 Download gff for SD02746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8724456..8724651 120..315 100 <- Minus
2R 8724905..8725023 1..119 100   Minus
2R 8721054..8721231 316..493 100 <- Minus
2R 8719216..8720688 633..2105 99 <- Minus
2R 8720845..8720983 494..632 100 <- Minus

SD02746.pep Sequence

Translation from 141 to 1427

> SD02746.pep
MFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFTCCFGLHVHTAT
LMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYTVDLSAPALPTP
LSKVEPPYAYRDHSLNYQNFDMGGLVCTCMIAITLMMIYGTIKGKPSHLL
PFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESHRLPWREKLLELPPEE
LVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQHVRTLFPFLEPPTGV
HSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPPSYQVAMSNYEEGEDA
AVGGAEVNPSVAPLFVALGAATTANVASNTDDNMDNNNDQPNNNNTMHVN
ANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIGGIPPPPPYNDVADAQ
VQVPSQSPLHRQPNIPGQVFGGRDESQA*

SD02746.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12567-PA 929 GF12567-PA 552..929 59..428 1502 86.8 Plus
Dana\GF12567-PA 929 GF12567-PA 1..56 8..58 184 64.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10620-PA 844 GG10620-PA 471..844 59..428 1936 96.8 Plus
Dere\GG10620-PA 844 GG10620-PA 1..56 1..58 303 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21353-PA 457 GH21353-PA 1..457 1..428 1327 68.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PA 428 CG14767-PA 1..428 1..428 2279 100 Plus
CG14767-PB 432 CG14767-PB 1..432 1..428 2264 99.1 Plus
CG14767-PC 432 CG14767-PC 1..432 1..428 2264 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20769-PA 448 GI20769-PA 1..448 1..428 1346 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17362-PA 429 GL17362-PA 1..429 1..428 1603 80.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15783-PB 429 GA15783-PB 1..429 1..428 1617 81.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20666-PA 432 GM20666-PA 1..432 1..428 2277 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10140-PA 432 GD10140-PA 1..432 1..428 2281 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20504-PA 432 GJ20504-PA 1..432 1..428 1409 72.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21566-PA 757 GK21566-PA 368..757 59..428 1225 74.9 Plus
Dwil\GK21566-PA 757 GK21566-PA 1..68 1..58 156 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22796-PA 828 GE22796-PA 455..828 59..428 1956 97.6 Plus
Dyak\GE22796-PA 828 GE22796-PA 1..58 1..58 325 98.3 Plus

SD02746.hyp Sequence

Translation from 141 to 1427

> SD02746.hyp
MFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFTCCFGLHVHTAT
LMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYTVDLSAPALPTP
LSKVEPPYAYRDHSLNYQNFDMGGLVCTCMIAITLMMIYGTIKGKPSHLL
PFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESHRLPWREKLLELPPEE
LVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQHVRTLFPFLEPPTGV
HSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPPSYQVAMSNYEEGEDA
AVGGAEVNPSVAPLFVALGAATTANVASNTDDNMDNNNDQPNNNNTMHVN
ANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIGGIPPPPPYNDVADAQ
VQVPSQSPLHRQPNIPGQVFGGRDESQA*

SD02746.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PA 428 CG14767-PA 1..428 1..428 2279 100 Plus
CG14767-PB 432 CG14767-PB 1..432 1..428 2264 99.1 Plus
CG14767-PC 432 CG14767-PC 1..432 1..428 2264 99.1 Plus