Clone SD02978 Report

Search the DGRC for SD02978

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:78
Vector:pOT2
Associated Gene/TranscriptSply-RA
Protein status:SD02978.pep: gold
Preliminary Size:2129
Sequenced Size:2043

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8946 2001-01-01 Release 2 assignment
CG8946 2001-07-04 Blastp of sequenced clone
CG8946 2003-01-01 Sim4 clustering to Release 3
Sply 2008-04-29 Release 5.5 accounting
Sply 2008-08-15 Release 5.9 accounting
Sply 2008-12-18 5.12 accounting

Clone Sequence Records

SD02978.complete Sequence

2043 bp (2043 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052075

> SD02978.complete
GTCACTCTAAGCCGCAATGAGTTTGTACGATTAAAAGTTTATGTCTATTC
GCGTTTTTCGAAGCTTTCCCGATTCCCGTAGCTGTCCCACTGTACAGCTT
GCCACACGATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGCCCGTCACC
GAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAGGTCGCCAC
CATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGACTGTGATCT
GCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCTTTAAGTTT
GCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAATTGGCCAA
GGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGCCCACCTTA
CCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGGAGATCCTC
CGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGGCGTGATGG
TCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGTGGAGCTCG
TCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGCACGCAGAT
CTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGCATGGCATG
CAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGACCACCGGCG
GCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATTTCGCTAGA
GAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAGACGGTCCA
CGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGTGCGATCCG
TGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGTTCAAACGT
GCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCAAACTTCCC
CTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGGCGTTAAGT
ACGACATTCCCGTGCACGTGGACGCCTGCCTGGGCAGCTTTGTGGTGGCC
TTGGTCCGCAACGCCGGCTATAAGCTGCGTCCCTTCGACTTTGAGGTCAA
GGGAGTGACCAGTATCTCCGCTGATACCCACAAGTATGGTTTCGCGCCCA
AGGGATCATCGGTGATCCTTTACTCGGACAAGAAGTACAAGGACCATCAG
TTCACTGTGACTACTGACTGGCCTGGCGGCGTGTATGGTTCTCCCACAGT
CAACGGTTCCCGTGCCGGAGGTATTATCGCCGCCTGCTGGGCTACCATGA
TGAGCTTTGGCTATGATGGTTATCTGGAAGCCACTAAGCGCATTGTGGAT
ACGGCGCGCTATATCGAGAGGGGCGTTCGCGACATCGATGGCATCTTTAT
CTTTGGCAAGCCAGCTACTTCAGTGATTGCCCTGGGTTCCAATGTGTTTG
ACATTTTCCGGCTATCGGATTCGCTGTGCAAACTGGGCTGGAACCTAAAT
GCGCTGCAGTTTCCATCTGGTATCCACCTGTGCGTGACGGACATGCACAC
ACAGCCCGGAGTCGCGGATAAATTCATTGCCGATGTGCGCAGCTGTACGG
CGGAGATCATGAAGGATCCCGGCCAGCCCGTCGTTGGAAAGATGGCTCTC
TACGGCATGGCACAGAGCATACCCGACCGTTCGGTGATCGGAGAAGTGAC
TCGCCTATTCCTGCACTCCATGTACTACACTCCCAGCCAGAAATAGACAC
CTGGAGCAATCCCCGTTCTCTTCGCCCACCCCACGGAGCTAATGCATTTC
CTGTGCTGTATTTAAACCACCAAAACACCCCGTCGTTAAACCTTCCTCAA
GCAATTTATATTAGGATGCAATTAGTGCTGTAATCGAGGGTACAAAACGT
CGTTCTACGCGAAAATCTATCTACCTATGTTCATCCCATTTGTCAACATT
CGTCGCTCTAAGAGCCATGTTATTAAAGTGTTTTTCTGTGTAACTTGCTA
GTGAAATAATAATATAATATTAATCAAAAAAAAAAAAAAAAAA

SD02978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sply-RA 2175 Sply-RA 52..2078 1..2027 10015 99.6 Plus
Sply.a 2075 Sply.a 126..2058 95..2027 9545 99.5 Plus
Sply-RB 2221 Sply-RB 207..2139 95..2027 9545 99.5 Plus
Sply.a 2075 Sply.a 16..112 1..97 485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12976931..12977592 924..263 3310 100 Minus
chr2R 21145070 chr2R 12975658..12976163 2025..1520 2530 100 Minus
chr2R 21145070 chr2R 12976427..12976876 1373..924 2235 99.8 Minus
chr2R 21145070 chr2R 12978564..12978731 262..95 810 98.8 Minus
chr2R 21145070 chr2R 12976222..12976369 1520..1373 725 99.3 Minus
chr2R 21145070 chr2R 12979015..12979111 97..1 485 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17089714..17090375 924..263 3280 99.7 Minus
2R 25286936 2R 17088439..17088946 2027..1520 2540 100 Minus
2R 25286936 2R 17089210..17089659 1373..924 2205 99.3 Minus
2R 25286936 2R 17091359..17091526 262..95 810 98.8 Minus
2R 25286936 2R 17089005..17089152 1520..1373 725 99.3 Minus
2R 25286936 2R 17091810..17091906 97..1 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17090913..17091574 924..263 3280 99.6 Minus
2R 25260384 2R 17089638..17090145 2027..1520 2540 100 Minus
2R 25260384 2R 17090409..17090858 1373..924 2205 99.3 Minus
2R 25260384 2R 17092558..17092725 262..95 810 98.8 Minus
2R 25260384 2R 17090204..17090351 1520..1373 725 99.3 Minus
2R 25260384 2R 17093009..17093105 97..1 485 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:55:29 has no hits.

SD02978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:56:11 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12975683..12976162 1521..2000 100 <- Minus
chr2R 12976222..12976368 1374..1520 99 <- Minus
chr2R 12976427..12976875 925..1373 99 <- Minus
chr2R 12976931..12977592 263..924 100 <- Minus
chr2R 12978564..12978728 98..262 98 <- Minus
chr2R 12979015..12979111 1..97 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:26 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 1..1638 109..1746 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:12 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 1..1638 109..1746 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:21:14 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RB 1..1638 109..1746 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:27 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 1..1638 109..1746 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:14 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RB 1..1638 109..1746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:45 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 52..2076 1..2025 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:12 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 52..2076 1..2025 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:14 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 53..2077 1..2025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:28 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 52..2076 1..2025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:14 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
Sply-RA 53..2077 1..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:11 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17088441..17088945 1521..2025 100 <- Minus
2R 17089005..17089151 1374..1520 99 <- Minus
2R 17089210..17089658 925..1373 99 <- Minus
2R 17089714..17090375 263..924 99 <- Minus
2R 17091359..17091523 98..262 98 <- Minus
2R 17091810..17091906 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:11 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17088441..17088945 1521..2025 100 <- Minus
2R 17089005..17089151 1374..1520 99 <- Minus
2R 17089210..17089658 925..1373 99 <- Minus
2R 17089714..17090375 263..924 99 <- Minus
2R 17091359..17091523 98..262 98 <- Minus
2R 17091810..17091906 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:11 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17088441..17088945 1521..2025 100 <- Minus
2R 17089005..17089151 1374..1520 99 <- Minus
2R 17089210..17089658 925..1373 99 <- Minus
2R 17089714..17090375 263..924 99 <- Minus
2R 17091359..17091523 98..262 98 <- Minus
2R 17091810..17091906 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:14 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12979315..12979411 1..97 100   Minus
arm_2R 12975946..12976450 1521..2025 100 <- Minus
arm_2R 12976510..12976656 1374..1520 99 <- Minus
arm_2R 12976715..12977163 925..1373 99 <- Minus
arm_2R 12977219..12977880 263..924 99 <- Minus
arm_2R 12978864..12979028 98..262 98 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:08 Download gff for SD02978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17089640..17090144 1521..2025 100 <- Minus
2R 17090204..17090350 1374..1520 99 <- Minus
2R 17090409..17090857 925..1373 99 <- Minus
2R 17090913..17091574 263..924 99 <- Minus
2R 17092558..17092722 98..262 98 <- Minus
2R 17093009..17093105 1..97 100   Minus

SD02978.pep Sequence

Translation from 108 to 1745

> SD02978.pep
MRPFSGSDCLKPVTEGINRAFGAKEPWQVATITATTVLGGVWLWTVICQD
ENLYIRGKRQFFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYS
ETLPEKGLSKEEILRLVDEHLKTGHYNWRDGRVSGAVYGYKPDLVELVTE
VYGKASYTNPLHADLFPGVCKMEAEVVRMACNLFHGNSASCGTMTTGGTE
SIVMAMKAYRDFAREYKGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDV
DPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVKYDI
PVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGS
SVILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSF
GYDGYLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIF
RLSDSLCKLGWNLNALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEI
MKDPGQPVVGKMALYGMAQSIPDRSVIGEVTRLFLHSMYYTPSQK*

SD02978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13423-PA 545 GF13423-PA 1..545 1..545 2807 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22218-PA 545 GG22218-PA 1..545 1..545 2866 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20882-PA 544 GH20882-PA 1..544 1..544 2626 87.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sply-PA 545 CG8946-PA 1..545 1..545 2876 100 Plus
Sply-PB 545 CG8946-PB 1..545 1..545 2876 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21004-PA 544 GI21004-PA 1..544 1..544 2604 86.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10551-PA 527 GL10551-PA 1..527 1..545 2683 90.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21426-PA 545 GA21426-PA 1..545 1..545 2777 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20006-PA 545 GM20006-PA 1..545 1..545 2925 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25496-PA 545 GD25496-PA 1..545 1..545 2925 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20717-PA 544 GJ20717-PA 1..544 1..544 2643 88.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17932-PA 545 GK17932-PA 1..545 1..545 2630 89.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14215-PA 545 GE14215-PA 1..545 1..545 2879 97.4 Plus

SD02978.hyp Sequence

Translation from 108 to 1745

> SD02978.hyp
MRPFSGSDCLKPVTEGINRAFGAKEPWQVATITATTVLGGVWLWTVICQD
ENLYIRGKRQFFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYS
ETLPEKGLSKEEILRLVDEHLKTGHYNWRDGRVSGAVYGYKPDLVELVTE
VYGKASYTNPLHADLFPGVCKMEAEVVRMACNLFHGNSASCGTMTTGGTE
SIVMAMKAYRDFAREYKGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDV
DPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVKYDI
PVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGS
SVILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSF
GYDGYLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIF
RLSDSLCKLGWNLNALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEI
MKDPGQPVVGKMALYGMAQSIPDRSVIGEVTRLFLHSMYYTPSQK*

SD02978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sply-PA 545 CG8946-PA 1..545 1..545 2876 100 Plus
Sply-PB 545 CG8946-PB 1..545 1..545 2876 100 Plus