Clone SD02991 Report

Search the DGRC for SD02991

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:91
Vector:pOT2
Associated Gene/TranscriptSCAR-RA
Protein status:SD02991.pep: gold
Preliminary Size:2501
Sequenced Size:2308

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4636 2001-10-10 Blastp of sequenced clone
CG4636 2003-01-01 Sim4 clustering to Release 3
SCAR 2008-04-29 Release 5.5 accounting
SCAR 2008-08-15 Release 5.9 accounting
SCAR 2008-12-18 5.12 accounting

Clone Sequence Records

SD02991.complete Sequence

2308 bp (2308 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061579

> SD02991.complete
CTTCGGTCACACTGCAAAGGTGTGGAAATCTTAGTTTCCACAAAACGAGC
AAATATTTGCAGTTTTCAAGCCCCAAATTGGCTAATTAGAGTTCGCATCG
GATCGAATTTGCCACCGAACCCCCGAAACGGAAGTGGCTGCTTAATGTTT
GTTGTGGTGCCAGCCGCCAAACGAAAAGTGTGACGGGCGTCGATGAGGAC
GCACTAATTTACGGGTTTGCCAATTTGGAGATAATTGTCAATCGCGCCCG
ACCATGCCGCTGCCCAAACGATCCATAGAACCCGTGCATGTGGCCCGCTC
CGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTGGAGACGGTCACCA
ACACCACGCTGACGAACATCATTCGCCAGCTGTCCTCGCTGTCCAAGCAC
GCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGGGCAACATCGGGGA
TCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTAGCTATCAAAGTTA
CCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGACGGACATTACCCGA
AAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAACAGATCTTCTCGCG
CGCCACCATGCCGGCACCAATGATGGACACATATGCCCAGTGCGACAAAC
CGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGATGGCAAGGATGGT
CTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGTTGTGGCGACAGGA
GATGCTGAAGGATACCGAACGTGTGATGCACGACAAGGGCAAGAAGCTGA
ACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGCTGGACGTGGCAAT
AAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATACGCGCGAACAGCA
GCGACAACGTGCACTGGTGCACGGCGAAACATTGATGCCCAACAACGTCA
TCTACCGCACACCGAATTCCATGGTCAACGAAGAAGCCGGATACGGAAAT
ATGGGAGTGTACGATACACGTCCGCCACGTCCTAACTCGATCGAATTGAA
CCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTC
CACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGGCAACGGCATGGGT
GGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGTATGACGCCGGAAT
GTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAGGGAGTAATGTCGC
CGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAACAAACCGCGTCCG
TCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCGGTGGTGGTACGCC
CACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGAAGTATGTCGACCA
GTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGACGTCATTTCACCA
ATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGGCGGCCAAACTGCT
TGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCCAACAGCGTCCAGA
ATGCCAATGATATGGTCATGACGCAACTGAGCAATACTTTCCACAGCATC
GGTATGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGCCACCGCC
GCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCACCTAATGCCGCGC
CACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGGCATGGGCAGTGGC
AACCAACACACGCTGCGCCCGCATCAAATTCTTCCCAAATCACTGGCCAA
TGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTGCCTCACATTGTCG
CACCCAAGAAGATGCTGCCTCCATTCCATGACCCACGCAACGACTTGATG
AAAGCCATTCGAGATGGTATTACTCTACGTAAAGTTGAAAAGTCAGAGCA
AAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTGGCTTCAATCTTGG
CCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGATTCGGATAGCGAA
GACGACAGCGAGGGCTGGATGGAACCGAACGAAACATCGGCTTGATCCCT
GATTAACTCGTTAAAGCCTGACATAATTCTAAAAAACAAAAAGAAGAAGT
AATTCCAAAGAGAATTAATCCATACGATGGTCGAAACCAAGCGTGGTATG
AAATTGGATTACACAAAAGCACCAAAGCTTTTCTACCACCCTTTATACAA
TATACACCTAATCCTAAATAATATGTCTAAAATCAAAAAAAAAAAAAAAA
AAAAAAAA

SD02991.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RA 2829 SCAR-RA 5..2292 1..2288 11410 99.9 Plus
SCAR.d 2871 SCAR.d 1084..2373 999..2288 6420 99.8 Plus
SCAR.e 2891 SCAR.e 1105..2394 999..2288 6420 99.8 Plus
SCAR.d 2871 SCAR.d 5..1005 1..1001 5005 100 Plus
SCAR.e 2891 SCAR.e 5..1002 1..998 4990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10976653..10977462 189..998 4050 100 Plus
chr2L 23010047 chr2L 10979201..10979868 999..1666 3325 99.9 Plus
chr2L 23010047 chr2L 10980242..10980610 1916..2284 1845 100 Plus
chr2L 23010047 chr2L 10979932..10980187 1664..1919 1265 99.6 Plus
chr2L 23010047 chr2L 10975535..10975723 1..189 945 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977897..10978706 189..998 4050 100 Plus
2L 23513712 2L 10980445..10981112 999..1666 3325 99.9 Plus
2L 23513712 2L 10981486..10981858 1916..2288 1865 100 Plus
2L 23513712 2L 10981176..10981431 1664..1919 1265 99.6 Plus
2L 23513712 2L 10976780..10976968 1..189 945 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977897..10978706 189..998 4050 100 Plus
2L 23513712 2L 10980445..10981112 999..1666 3325 99.8 Plus
2L 23513712 2L 10981486..10981858 1916..2288 1865 100 Plus
2L 23513712 2L 10981176..10981431 1664..1919 1265 99.6 Plus
2L 23513712 2L 10976780..10976968 1..189 945 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:16:04 has no hits.

SD02991.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:17:04 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10975535..10975723 1..189 100 -> Plus
chr2L 10976654..10977462 190..998 100 -> Plus
chr2L 10979201..10979868 999..1666 99 -> Plus
chr2L 10979935..10980184 1667..1916 99 -> Plus
chr2L 10980243..10980610 1917..2284 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:27 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 1..1842 254..2095 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:41 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 1..1842 254..2095 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:09:07 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RE 1..1899 254..2152 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:34 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 1..1842 254..2095 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RE 1..1899 254..2152 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:48 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 7..2290 1..2284 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:40 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 7..2290 1..2284 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:07 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 9..2292 1..2284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:34 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 7..2290 1..2284 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 9..2292 1..2284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:04 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10976780..10976968 1..189 100 -> Plus
2L 10977898..10978706 190..998 100 -> Plus
2L 10980445..10981112 999..1666 99 -> Plus
2L 10981179..10981428 1667..1916 99 -> Plus
2L 10981487..10981854 1917..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:04 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10976780..10976968 1..189 100 -> Plus
2L 10977898..10978706 190..998 100 -> Plus
2L 10980445..10981112 999..1666 99 -> Plus
2L 10981179..10981428 1667..1916 99 -> Plus
2L 10981487..10981854 1917..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:04 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10976780..10976968 1..189 100 -> Plus
2L 10977898..10978706 190..998 100 -> Plus
2L 10980445..10981112 999..1666 99 -> Plus
2L 10981179..10981428 1667..1916 99 -> Plus
2L 10981487..10981854 1917..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:07 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10976780..10976968 1..189 100 -> Plus
arm_2L 10977898..10978706 190..998 100 -> Plus
arm_2L 10980445..10981112 999..1666 99 -> Plus
arm_2L 10981179..10981428 1667..1916 99 -> Plus
arm_2L 10981487..10981854 1917..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:41 Download gff for SD02991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977898..10978706 190..998 100 -> Plus
2L 10980445..10981112 999..1666 99 -> Plus
2L 10981179..10981428 1667..1916 99 -> Plus
2L 10981487..10981854 1917..2284 100   Plus
2L 10976780..10976968 1..189 100 -> Plus

SD02991.hyp Sequence

Translation from 253 to 2094

> SD02991.hyp
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSA*

SD02991.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PE 632 CG4636-PE 1..613 1..613 3245 100 Plus
SCAR-PA 613 CG4636-PA 1..613 1..613 3245 100 Plus
SCAR-PC 640 CG4636-PC 1..640 1..613 3207 95.8 Plus
SCAR-PB 641 CG4636-PB 1..641 1..613 3201 95.5 Plus
SCAR-PF 647 CG4636-PF 1..647 1..613 3195 94.6 Plus

SD02991.pep Sequence

Translation from 253 to 2094

> SD02991.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSA*

SD02991.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15838-PA 648 GF15838-PA 1..648 1..613 2525 87.2 Plus
Dana\GF23228-PA 2210 GF23228-PA 146..259 27..136 173 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23688-PA 617 GG23688-PA 1..617 1..613 3173 97.7 Plus
Dere\GG23102-PA 1787 GG23102-PA 138..251 27..136 173 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10763-PA 692 GH10763-PA 1..244 1..247 1194 89.1 Plus
Dgri\GH10763-PA 692 GH10763-PA 313..692 249..613 1024 72.5 Plus
Dgri\GH17981-PA 1780 GH17981-PA 153..262 27..132 164 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PE 632 CG4636-PE 1..613 1..613 3245 100 Plus
SCAR-PA 613 CG4636-PA 1..613 1..613 3245 100 Plus
SCAR-PC 640 CG4636-PC 1..640 1..613 3207 95.8 Plus
SCAR-PB 641 CG4636-PB 1..641 1..613 3201 95.5 Plus
SCAR-PF 647 CG4636-PF 1..647 1..613 3195 94.6 Plus
SCAR-PD 674 CG4636-PD 1..674 1..613 2875 84.4 Plus
gukh-PB 534 CG31043-PB 138..251 27..136 170 33.3 Plus
gukh-PC 1044 CG31043-PC 138..251 27..136 170 33.3 Plus
gukh-PE 1764 CG31043-PE 138..251 27..136 170 33.3 Plus
gukh-PA 1788 CG31043-PA 138..251 27..136 170 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20586-PA 622 GI20586-PA 1..622 1..613 2288 82.1 Plus
Dmoj\GI10550-PA 1831 GI10550-PA 149..258 27..132 173 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19132-PA 615 GL19132-PA 1..615 1..613 2486 86.9 Plus
Dper\GL23446-PA 1240 GL23446-PA 151..264 27..136 178 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18320-PA 615 GA18320-PA 1..615 1..613 2486 86.9 Plus
Dpse\GA15962-PE 2087 GA15962-PE 148..261 27..136 178 32.5 Plus
Dpse\GA15962-PB 1895 GA15962-PB 148..261 27..136 178 32.5 Plus
Dpse\GA15962-PC 1114 GA15962-PC 148..261 27..136 177 32.5 Plus
Dpse\GA15962-PD 616 GA15962-PD 148..261 27..136 174 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18775-PA 596 GM18775-PA 1..596 1..613 3048 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23746-PA 332 GD23746-PA 1..332 286..613 1683 98.2 Plus
Dsim\GD23745-PA 260 GD23745-PA 1..259 1..259 1391 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13927-PA 620 GJ13927-PA 1..620 1..613 2257 82.4 Plus
Dvir\GJ22906-PA 1832 GJ22906-PA 153..262 27..132 181 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14890-PA 629 GK14890-PA 1..629 1..613 2246 81.8 Plus
Dwil\GK11025-PA 1859 GK11025-PA 160..269 27..132 177 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18500-PA 616 GE18500-PA 1..616 1..613 3178 97.7 Plus
Dyak\GE25573-PA 1789 GE25573-PA 140..253 27..136 178 32.5 Plus