BDGP Sequence Production Resources |
Search the DGRC for SD03023
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 30 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | Vps35-RB |
Protein status: | SD03023.pep: gold |
Sequenced Size: | 3403 |
Gene | Date | Evidence |
---|---|---|
CG5625-RB | 2009-06-22 | Replacement based on scoring |
3403 bp assembled on 2009-11-30
GenBank Submission: BT100312.1
> SD03023.complete TCCAATGTGTCTGTCGGCTGTCGGCAATCGATATCTCCTCTGCAAATAGA TATTTTCAGAATAATTGGCTTATTTCACTTCGCCCTAACGCTGCAGTAAT GGTAAGTGCATCGAGGTGCAACCTGTAGTCGCCAGAAGTCGAAATTCCTA GAGAACCGAGTGCCCCAGGTCCAGGCTTAACCGAGTGCTGAGTGCCCACC CTGTCGACGTCAAAAGAGGGCTGCCTGTGGTGAGAAGCAACGCCCCCCCG GTCCAAATCCCACGTCCATGTATCCCTGGAGCTCCTCCTCGTACGGCGGC CAGATTCCCAGTGCCGCCAACGTCCGGACCATGCCGAATGGTTTGGATGA CCAGGAGAAGCTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCT TTCAAATGAACCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAG TGCGCCAGCACCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAA AAGTTACTACGAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGG AGCTGTACCTCAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTC GTTCAGTACTCGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGT GGGCATTGTGTATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAA AGGACCTGGTCGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTC TTTCTGCGCAACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGT GATGGTTGAGGAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACT TCGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAG CACCAGGGACACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGA ACTAAAGATCCTGGTAGGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGT CGGCCACTCTGGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGGAG CAGGTGGTCAGCTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTG CATCATCCAGGTGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCT TCCTAAAGTCCTGCGCTCAGCTGGAGACCGGTGTTAATGTGAAGAACATC ATAATATCGTTAATCGAACGATTGGCTGCCTATAACCAGCGAAGTGGCAA GACAAGTGGTAATGCCATCGATGCCATCATACCCGCCGAGGTGGAACTGT TTGAAGTTTTCAGTGTCCAAGTGGCTAACATCGTGCAGACCCGAATGGAC ATGCCGTTGGAGGACACCATATCGCTGCAGGTTGCTCTGCTGAGCTTGGC TCAGAAAGTGTATCCCGATCGAGTTGACTATGTAGATAAGGTGCTGGGCA CAACCGCTCAAATTTTGCAGCGCATGAACATGAACAACATCTCCCATTTG CTATCTGTAAACCAGGAGTTATCGCGCCTTCTGCGCATCTGTATCGACTT CTACAACAACGCCTTGACCATAATTCAACTTCAAAACTTTTGCCCGCTGC TCGAAAAGTTTGACTACACATCCCGTAAATCGCTGGCCCTGTACCTAGTT ATGAACATCTTGGACAACGAAACCCTAGTTCCAACAGCTGATCAGGCGGA TAGTCTGCTGACCATCATTACGCCGTTGATTAAGGACGATGATACGAACA AAGAAAACGGCGCGGCAGCAGGAAATACGACTCCGGATGCCGAGGAGTTT GCCGAAGAGCAGGGGGTTGTGGCACGATTTATTCACCTCATGCGCTCAGA TGAACCGGACATGCAGTATAAAATGCTGCAGACCGCCCGAAAGCATCTGG GAAATGGGGGCGGGCAAAGGCTAAAGCATGTCCTACCTCCGCTTGTCTTC GCCGCCTATCAGCTGGCCTTCAAGTACAAGGCGATCGCCGAGCAGGATGA GAACTGGGACAAGAAGTGTCAGAAAATCGTGCAATACTGCCACAGTACCA TCAGTGCGCTGGCCAAAGCCGATCTCGCAGACCTAGCCCTGCGTCTATAC CTGCAAGGTGCCCTGGTCATTGGGGAGATCGGTTATACGAATCACGAAAC GGTGGCATACGAATTCATGACCCAGGCCTTCTCCCTCTACGAAGACGAGA TCTCCGACTCAAAGGCCCAGCTTGCAGCCATAACGCTCATCATGTCCACT TTTGAACAAATGTCCTGCTTTGGCGAGGAGAACGCTGAGCCGCTTAGGAC GAATTGTGCGCTGGCTGCTTCAAAATTGCTGAAAAAACCGGATCAATGTC GCGGTGTTGTGGCCTGTGCGGCGCTTTTCTGGAGTGGAAAGCAAAACGGC GAGGAGATGCGTGACGAGAAGCGAACTTTGGACTGCTTAAAGAAGGGTGC TCGCATCGCTTCGCAGTGCTTGGATACCGGAGTGCAAGTTCAATTGTATG TGGAGCTGCTGAATCACTATCTGTTTTACTTCGAACGCGGCAACTCGCTT ATCACTGTGGCTATGCTCAACCAGCTAATTGCCAAGGTGAATGAGGAGCT GCCCAACCTGGAGCCCAGCGAGGAGACCAAACAGATCGAGAGCCATTACA AGAACACGCTGGCACACATCCGCAGTCGCATGGAATCCAATGACTCGTCG CTGGAGGTCTCCTTTGCGGGCATAACTCTCAATTAGCCCAGCGCACCCAC TTTGGATAACCCTGGGAAGCATCCAAGCGCTACTAAAGCCCTGCAGGAGG ATCAGCCAGGCCCGTTTTTATACAGCTAGTTATCAACTTGCTCGTAGACC GTTTAGACTTATTCAAAGCTCTGCGAGAGTATTCAAATTGCTTGTGTGTG AAACTAAATTCCATGGTTAGGAAAGTTGTGGGCCTTCGACCAACTTTTGA TTTGTCAATTTGATTTCGATCGTAATCGTAAGTGCAAAGTAAAAACATTC TTGATTATTTCCCCAATTTATTTAGTATGATAGCTATGCGTATATTTACC CCAGAGGATTTTTAATTTACCATATTTAATCTCCAAACCTTCCCTAAAAA ATAATGTGAAAATATTGTTAAACAAAATCTTACATACCATTATCGAATTG GTTCACGAATCGCCACGCGCTACGTATAAATATGTATTACAAATAAAGTT AAGACCAAATTGTTTTCGCAAAACAATGCGCCTGTATGTGTGGCCTGGAC TACAGTGAATCAAAACTCGTCAGCGATAAACATGTAAAGTAATTCGTTTA TTAAAAATATATAAGCCGACTAATTTCCATCGGTCTATCAATCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps35-RB | 3419 | Vps35-RB | 17..3361 | 1..3345 | 16725 | 100 | Plus |
Vps35-RA | 3245 | Vps35-RA | 169..3187 | 327..3345 | 15095 | 100 | Plus |
Vps35-RA | 3245 | Vps35-RA | 69..169 | 1..101 | 505 | 100 | Plus |
CG3074-RA | 2002 | CG3074-RA | 1933..2002 | 3345..3276 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18075649..18076429 | 2572..3343 | 3660 | 98.2 | Plus |
chr2R | 21145070 | chr2R | 18073299..18074032 | 518..1251 | 3580 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 18074781..18075346 | 1826..2391 | 2770 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 18074390..18074728 | 1488..1826 | 1680 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 18072526..18072852 | 1..327 | 1605 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 18074096..18074333 | 1250..1487 | 1130 | 98.3 | Plus |
chr2R | 21145070 | chr2R | 18073048..18073238 | 327..517 | 955 | 100 | Plus |
chr2R | 21145070 | chr2R | 18075406..18075589 | 2391..2574 | 905 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22189111..22189884 | 2572..3345 | 3870 | 100 | Plus |
2R | 25286936 | 2R | 22186768..22187501 | 518..1251 | 3670 | 100 | Plus |
2R | 25286936 | 2R | 22188244..22188809 | 1826..2391 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 22187852..22188190 | 1488..1826 | 1695 | 100 | Plus |
2R | 25286936 | 2R | 22185994..22186320 | 1..327 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 22187558..22187795 | 1250..1487 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 22186516..22186706 | 327..517 | 955 | 100 | Plus |
2R | 25286936 | 2R | 22188868..22189051 | 2391..2574 | 920 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22190310..22191083 | 2572..3345 | 3870 | 100 | Plus |
2R | 25260384 | 2R | 22187967..22188700 | 518..1251 | 3670 | 100 | Plus |
2R | 25260384 | 2R | 22189443..22190008 | 1826..2391 | 2830 | 100 | Plus |
2R | 25260384 | 2R | 22189051..22189389 | 1488..1826 | 1695 | 100 | Plus |
2R | 25260384 | 2R | 22187193..22187519 | 1..327 | 1635 | 100 | Plus |
2R | 25260384 | 2R | 22188757..22188994 | 1250..1487 | 1190 | 100 | Plus |
2R | 25260384 | 2R | 22187715..22187905 | 327..517 | 955 | 100 | Plus |
2R | 25260384 | 2R | 22190067..22190250 | 2391..2574 | 920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18072526..18072852 | 1..327 | 99 | -> | Plus |
chr2R | 18073049..18073238 | 328..517 | 100 | -> | Plus |
chr2R | 18073299..18074032 | 518..1251 | 99 | -> | Plus |
chr2R | 18074098..18074333 | 1252..1487 | 98 | -> | Plus |
chr2R | 18074390..18074728 | 1488..1826 | 99 | -> | Plus |
chr2R | 18074782..18075345 | 1827..2390 | 99 | -> | Plus |
chr2R | 18075406..18075589 | 2391..2574 | 99 | -> | Plus |
chr2R | 18075652..18076429 | 2575..3343 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RB | 1..2469 | 268..2736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 1..2469 | 268..2736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 1..2469 | 268..2736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 1..2469 | 268..2736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RB | 17..3359 | 1..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 17..3359 | 1..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 23..3365 | 1..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RB | 23..3365 | 1..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22187560..22187795 | 1252..1487 | 100 | -> | Plus |
2R | 22185994..22186320 | 1..327 | 100 | -> | Plus |
2R | 22186517..22186706 | 328..517 | 100 | -> | Plus |
2R | 22186768..22187501 | 518..1251 | 100 | -> | Plus |
2R | 22187852..22188190 | 1488..1826 | 100 | -> | Plus |
2R | 22188245..22188808 | 1827..2390 | 100 | -> | Plus |
2R | 22188868..22189051 | 2391..2574 | 100 | -> | Plus |
2R | 22189114..22189882 | 2575..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22187560..22187795 | 1252..1487 | 100 | -> | Plus |
2R | 22185994..22186320 | 1..327 | 100 | -> | Plus |
2R | 22186517..22186706 | 328..517 | 100 | -> | Plus |
2R | 22186768..22187501 | 518..1251 | 100 | -> | Plus |
2R | 22187852..22188190 | 1488..1826 | 100 | -> | Plus |
2R | 22188245..22188808 | 1827..2390 | 100 | -> | Plus |
2R | 22188868..22189051 | 2391..2574 | 100 | -> | Plus |
2R | 22189114..22189882 | 2575..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22187560..22187795 | 1252..1487 | 100 | -> | Plus |
2R | 22185994..22186320 | 1..327 | 100 | -> | Plus |
2R | 22186517..22186706 | 328..517 | 100 | -> | Plus |
2R | 22186768..22187501 | 518..1251 | 100 | -> | Plus |
2R | 22187852..22188190 | 1488..1826 | 100 | -> | Plus |
2R | 22188245..22188808 | 1827..2390 | 100 | -> | Plus |
2R | 22188868..22189051 | 2391..2574 | 100 | -> | Plus |
2R | 22189114..22189882 | 2575..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18073499..18073825 | 1..327 | 100 | -> | Plus |
arm_2R | 18074022..18074211 | 328..517 | 100 | -> | Plus |
arm_2R | 18074273..18075006 | 518..1251 | 100 | -> | Plus |
arm_2R | 18075065..18075300 | 1252..1487 | 100 | -> | Plus |
arm_2R | 18075357..18075695 | 1488..1826 | 100 | -> | Plus |
arm_2R | 18075750..18076313 | 1827..2390 | 100 | -> | Plus |
arm_2R | 18076373..18076556 | 2391..2574 | 100 | -> | Plus |
arm_2R | 18076619..18077387 | 2575..3343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22190313..22191081 | 2575..3343 | 100 | Plus | |
2R | 22187193..22187519 | 1..327 | 100 | -> | Plus |
2R | 22187716..22187905 | 328..517 | 100 | -> | Plus |
2R | 22187967..22188700 | 518..1251 | 100 | -> | Plus |
2R | 22188759..22188994 | 1252..1487 | 100 | -> | Plus |
2R | 22189051..22189389 | 1488..1826 | 100 | -> | Plus |
2R | 22189444..22190007 | 1827..2390 | 100 | -> | Plus |
2R | 22190067..22190250 | 2391..2574 | 100 | -> | Plus |
Translation from 267 to 2735
> SD03023.pep MYPWSSSSYGGQIPSAANVRTMPNGLDDQEKLLAEAIGLARKQAFQMNHF LDKERMLDSLKCASTMLGELRTSVLSPKSYYELYMAVTNELCHLELYLSE KIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRSILKDLVEM CRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNVYDAIDFVLTNF AEMNKLWVRMQHQGHSSEKTRREKEREELKILVGTNLVRLSQLESATLEI YQRLILPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLKTLDPFLKSCA QLETGVNVKNIIISLIERLAAYNQRSGKTSGNAIDAIIPAEVELFEVFSV QVANIVQTRMDMPLEDTISLQVALLSLAQKVYPDRVDYVDKVLGTTAQIL QRMNMNNISHLLSVNQELSRLLRICIDFYNNALTIIQLQNFCPLLEKFDY TSRKSLALYLVMNILDNETLVPTADQADSLLTIITPLIKDDDTNKENGAA AGNTTPDAEEFAEEQGVVARFIHLMRSDEPDMQYKMLQTARKHLGNGGGQ RLKHVLPPLVFAAYQLAFKYKAIAEQDENWDKKCQKIVQYCHSTISALAK ADLADLALRLYLQGALVIGEIGYTNHETVAYEFMTQAFSLYEDEISDSKA QLAAITLIMSTFEQMSCFGEENAEPLRTNCALAASKLLKKPDQCRGVVAC AALFWSGKQNGEEMRDEKRTLDCLKKGARIASQCLDTGVQVQLYVELLNH YLFYFERGNSLITVAMLNQLIAKVNEELPNLEPSEETKQIESHYKNTLAH IRSRMESNDSSLEVSFAGITLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12616-PA | 822 | GF12616-PA | 1..822 | 1..822 | 4263 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22173-PA | 822 | GG22173-PA | 1..822 | 1..822 | 4362 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21205-PA | 800 | GH21205-PA | 1..800 | 1..822 | 3949 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps35-PB | 822 | CG5625-PB | 1..822 | 1..822 | 4189 | 100 | Plus |
Vps35-PA | 803 | CG5625-PA | 2..803 | 21..822 | 4081 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20494-PA | 818 | GI20494-PA | 1..818 | 1..822 | 4157 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17528-PA | 822 | GL17528-PA | 1..822 | 1..822 | 4207 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24193-PA | 822 | GA24193-PA | 1..822 | 1..822 | 4207 | 95.4 | Plus |
Dpse\GA24193-PB | 801 | GA24193-PB | 1..801 | 22..822 | 4123 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15895-PA | 423 | GM15895-PA | 99..370 | 319..590 | 1355 | 93.8 | Plus |
Dsec\GM15895-PA | 423 | GM15895-PA | 1..107 | 1..107 | 509 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11652-PA | 822 | GD11652-PA | 1..822 | 1..822 | 4390 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22344-PA | 818 | GJ22344-PA | 1..818 | 1..822 | 4161 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20803-PA | 826 | GK20803-PA | 1..826 | 1..822 | 4169 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14166-PA | 822 | GE14166-PA | 1..822 | 1..822 | 4367 | 98.7 | Plus |
Translation from 267 to 2735
> SD03023.hyp MYPWSSSSYGGQIPSAANVRTMPNGLDDQEKLLAEAIGLARKQAFQMNHF LDKERMLDSLKCASTMLGELRTSVLSPKSYYELYMAVTNELCHLELYLSE KIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRSILKDLVEM CRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNVYDAIDFVLTNF AEMNKLWVRMQHQGHSSEKTRREKEREELKILVGTNLVRLSQLESATLEI YQRLILPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLKTLDPFLKSCA QLETGVNVKNIIISLIERLAAYNQRSGKTSGNAIDAIIPAEVELFEVFSV QVANIVQTRMDMPLEDTISLQVALLSLAQKVYPDRVDYVDKVLGTTAQIL QRMNMNNISHLLSVNQELSRLLRICIDFYNNALTIIQLQNFCPLLEKFDY TSRKSLALYLVMNILDNETLVPTADQADSLLTIITPLIKDDDTNKENGAA AGNTTPDAEEFAEEQGVVARFIHLMRSDEPDMQYKMLQTARKHLGNGGGQ RLKHVLPPLVFAAYQLAFKYKAIAEQDENWDKKCQKIVQYCHSTISALAK ADLADLALRLYLQGALVIGEIGYTNHETVAYEFMTQAFSLYEDEISDSKA QLAAITLIMSTFEQMSCFGEENAEPLRTNCALAASKLLKKPDQCRGVVAC AALFWSGKQNGEEMRDEKRTLDCLKKGARIASQCLDTGVQVQLYVELLNH YLFYFERGNSLITVAMLNQLIAKVNEELPNLEPSEETKQIESHYKNTLAH IRSRMESNDSSLEVSFAGITLN*