Clone SD03208 Report

Search the DGRC for SD03208

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:32
Well:8
Vector:pOT2
Associated Gene/TranscriptCG1074-RA
Protein status:SD03208.pep: gold
Preliminary Size:1769
Sequenced Size:1661

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1074 2001-01-01 Release 2 assignment
CG1074 2001-07-04 Blastp of sequenced clone
CG1074 2003-01-01 Sim4 clustering to Release 3
CG1074 2008-04-29 Release 5.5 accounting
CG1074 2008-08-15 Release 5.9 accounting
CG1074 2008-12-18 5.12 accounting

Clone Sequence Records

SD03208.complete Sequence

1661 bp (1661 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052078

> SD03208.complete
AATGAAGTCGCTCTAGAATATAAATAAACAATTCATTAATTAAAATAGCG
ACATGGTCAACTGGAGGAAGTTTATCTTGTGGTTCGCCCAGGAGCATGTC
GACTTTCGCGTGCAGGAGTTTGATTCGCTGGTCAAAATGTTTGGACTTCA
GGTCCGGCGGCTTACAGAACACACCAGGAAACCATTTTGGTTGGTCGAAT
TTCGGGACACGGATACTGCGTTGCTATATGCATCCAGGTCCGTTTCGTTG
CGCGCCATGTTCGAGCTCTACGCCCACTCCAACAAATTACCCGAGTTTCA
CCAGAGGCTACGGAATCATGTTACCGCGAACTGGCATTCGCTTGCGGAAT
ACTTTCGGGTGGATGCCAGTTTTAAGATCGTTGTGGAGACCTACAACAAG
CACTTCAGCCAGAGGGAAAAGGTTGAGAAAATCGAGTCCATGGATTACCT
GCCAATAGAGGGAACGGTCAATCTGGAGAAACCCGTGGTGGAGTGGTGGT
ACATCGAGTTTTGGGGCTTGGATCCAACGGCTGTGCCACCTGAGCCGGAG
GACATTCTGTTTGGTCGGCTGATGGCCCATGGTCAGCGGCATTTGATCAA
GGAGCTTTCGCTGAAGCATCGTAAGTTTATCGGTAACACCAGCATGGACG
CCCAGCTGAGCCTGCTAATGGCCAACCAAGCGATGGTACGCAATGGGGAT
CTGGTATTTGATCCGTTTGTGGGAACGGGCTCGCTTTTGGTAAGCGCCGC
CAAGTGGGGCGGGTATGTCCTGGGAGCGGACATAGACTACATGATGGTGC
ACGCCCGCTGCCGGCCGAGCCGGATAACCCAAAAAGTGCGGGAGAAGGAC
GAGAGCATTCGGGCCAACTTGAAGCAGTACGGCTGCGCTGATCGCTACAT
GGATGTGGTGGTGGCCGATTTCTCCAACCCGGTGTGGCATTCCCGCATCT
CGTTCGACTGCATAATAACAGATCCTCCCTATGGAATAAGAGAGGCCACG
GAAAAGGTGGAGAAAAAGGCTAGCGTAAAGGCCAACACTAGAAGTGACAG
CATGGTGCATTACCCATCAACGTCGCACTATTCCTTGCAGAGTCTCTATG
GGGATCTTCTCGAGTTCTCTGCGAGGCACCTAAAACTGGGAGGACGTCTT
GTCTGCTGGATACCCTTTCACAGCGAGGACTACGACCCGAAGATGCTGCC
ACAGCATCAGCATCTGAGCCTGATAGCTAACTCTGAGCAGCAATTGACTG
GGAATACAGCTAGGCGGCTACTCACCTATGAAAAGTGTTTCGAGTATAGT
CCAACAGAACCCTTATTGTGCAGCATAAAACAGGTGCCAACGCCCTCGCA
GGACTTCAGGGATCGGTACTTTAATAATGCTCTGGAGTCACGCAAAGAGC
GTCGAATGCGGAAGGCAGAGCTGCGGGAACAGGCTCGTGTGGAGATGAAT
GCACGGGGAAAGATTCCTACGGATGGGCGCTCCAAAAAGTGTGACCTGAA
TAAAGCTCGATTTATGTGATCTCCATTGAAGTGTAATTTATAGTAAGATA
TAACTTCGATTCGGGCCAAATTTTTTGTTGGCTGTGTGTCGCTGAGTTTT
CTTGTATGGCATACATTTCGAAGATTTTGATTCAGATTTGGACAAAAAAA
AAAAAAAAAAA

SD03208.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1074-RA 1752 CG1074-RA 48..1701 1..1654 8270 100 Plus
CG1074.a 1632 CG1074.a 167..1632 178..1643 7330 100 Plus
CG1074.a 1632 CG1074.a 17..167 1..151 755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 260373..261169 178..974 3985 100 Plus
chr3R 27901430 chr3R 261226..261894 975..1643 3345 100 Plus
chr3R 27901430 chr3R 259728..259905 1..178 890 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4434654..4435450 178..974 3985 100 Plus
3R 32079331 3R 4435507..4436186 975..1654 3400 100 Plus
3R 32079331 3R 4434009..4434186 1..178 890 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4175485..4176281 178..974 3985 100 Plus
3R 31820162 3R 4176338..4177017 975..1654 3400 100 Plus
3R 31820162 3R 4174840..4175017 1..178 890 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:20:29 has no hits.

SD03208.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:21:07 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 259728..259905 1..178 100 -> Plus
chr3R 260374..261169 179..974 100 -> Plus
chr3R 261226..261894 975..1643 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:44 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 1..1467 53..1519 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:01 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 1..1467 53..1519 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:47 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 1..1467 53..1519 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:14 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 1..1467 53..1519 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:05 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 1..1467 53..1519 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:29 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 17..1659 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:01 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 17..1659 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:47 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 45..1687 1..1643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:14 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 17..1659 1..1643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:05 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1074-RA 45..1687 1..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:07 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4434009..4434186 1..178 100 -> Plus
3R 4434655..4435450 179..974 100 -> Plus
3R 4435507..4436175 975..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:07 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4434009..4434186 1..178 100 -> Plus
3R 4434655..4435450 179..974 100 -> Plus
3R 4435507..4436175 975..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:07 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4434009..4434186 1..178 100 -> Plus
3R 4434655..4435450 179..974 100 -> Plus
3R 4435507..4436175 975..1643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:47 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 259731..259908 1..178 100 -> Plus
arm_3R 260377..261172 179..974 100 -> Plus
arm_3R 261229..261897 975..1643 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:56 Download gff for SD03208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4174840..4175017 1..178 100 -> Plus
3R 4175486..4176281 179..974 100 -> Plus
3R 4176338..4177006 975..1643 100   Plus

SD03208.pep Sequence

Translation from 52 to 1518

> SD03208.pep
MVNWRKFILWFAQEHVDFRVQEFDSLVKMFGLQVRRLTEHTRKPFWLVEF
RDTDTALLYASRSVSLRAMFELYAHSNKLPEFHQRLRNHVTANWHSLAEY
FRVDASFKIVVETYNKHFSQREKVEKIESMDYLPIEGTVNLEKPVVEWWY
IEFWGLDPTAVPPEPEDILFGRLMAHGQRHLIKELSLKHRKFIGNTSMDA
QLSLLMANQAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH
ARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVADFSNPVWHSRIS
FDCIITDPPYGIREATEKVEKKASVKANTRSDSMVHYPSTSHYSLQSLYG
DLLEFSARHLKLGGRLVCWIPFHSEDYDPKMLPQHQHLSLIANSEQQLTG
NTARRLLTYEKCFEYSPTEPLLCSIKQVPTPSQDFRDRYFNNALESRKER
RMRKAELREQARVEMNARGKIPTDGRSKKCDLNKARFM*

SD03208.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18217-PA 486 GF18217-PA 5..485 4..487 2157 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12428-PA 488 GG12428-PA 1..488 1..488 2436 91 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11743-PA 486 GH11743-PA 5..485 4..487 1963 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1074-PA 488 CG1074-PA 1..488 1..488 2588 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10687-PA 491 GI10687-PA 3..490 4..487 1975 73.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21470-PA 486 GL21470-PA 2..486 4..488 2101 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10534-PA 460 GA10534-PA 1..460 29..488 1990 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10758-PA 488 GM10758-PA 1..488 1..488 2503 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19733-PA 488 GD19733-PA 1..488 1..488 2518 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10432-PA 491 GJ10432-PA 5..490 4..487 2020 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13537-PA 488 GK13537-PA 5..487 4..487 1955 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25419-PA 488 GE25419-PA 1..488 1..488 2369 88.7 Plus

SD03208.hyp Sequence

Translation from 52 to 1518

> SD03208.hyp
MVNWRKFILWFAQEHVDFRVQEFDSLVKMFGLQVRRLTEHTRKPFWLVEF
RDTDTALLYASRSVSLRAMFELYAHSNKLPEFHQRLRNHVTANWHSLAEY
FRVDASFKIVVETYNKHFSQREKVEKIESMDYLPIEGTVNLEKPVVEWWY
IEFWGLDPTAVPPEPEDILFGRLMAHGQRHLIKELSLKHRKFIGNTSMDA
QLSLLMANQAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH
ARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVADFSNPVWHSRIS
FDCIITDPPYGIREATEKVEKKASVKANTRSDSMVHYPSTSHYSLQSLYG
DLLEFSARHLKLGGRLVCWIPFHSEDYDPKMLPQHQHLSLIANSEQQLTG
NTARRLLTYEKCFEYSPTEPLLCSIKQVPTPSQDFRDRYFNNALESRKER
RMRKAELREQARVEMNARGKIPTDGRSKKCDLNKARFM*

SD03208.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1074-PA 488 CG1074-PA 1..488 1..488 2588 100 Plus