Clone SD03330 Report

Search the DGRC for SD03330

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:33
Well:30
Vector:pOT2
Associated Gene/TranscriptCG3689-RB
Protein status:SD03330.pep: gold
Preliminary Size:2189
Sequenced Size:2256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3689 2001-01-01 Release 2 assignment
CG3689 2001-11-09 Blastp of sequenced clone
CG3689 2003-01-01 Sim4 clustering to Release 3
CG3689 2008-04-29 Release 5.5 accounting
CG3689 2008-08-15 Release 5.9 accounting
CG3689 2008-12-18 5.12 accounting

Clone Sequence Records

SD03330.complete Sequence

2256 bp (2256 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069791

> SD03330.complete
CTCGTCCAGCCGGTTAATTTTTTTGCACAAGCGCTGGACAGAAAAGTGTA
ATTAAGCGGCTTAAAACGGGTTTACATTTATAGTATAACTTGTAAATAAA
CAGTTAAGGATTATAATATTATTGGAATACAAGTTTCCAACGCACAACCA
AAAGATTTGGTAGAAAGTCGGCCAGCTTGTCCCGCAAATTTTCCCACAGG
GGTGTGTGTATAACAAAATGGCGTCCTCGCAAGTCTCAAACAAATCGGGC
TCCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAG
CAATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATC
GCACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAG
CCGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCG
CGAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTC
TGGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACC
ACGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGT
CGAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCG
TAAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCG
AACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCC
CAAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGG
ACGGGAACGCCAGTTACGATGTACCCTGAGCAGTTCCATTAGCGCCGTGT
GTGTCGTATCTACCCAACTCTAATCTCAAGAGTGCAATGCCATAGAACAA
CAAATCGAGCAAACAGAACAGATCAAACAGAAAAGAAACAAACAGATCGC
AAAAGCTGGCGCAGGCGACTCCTTAGTTAGTTTTGATTCTAGTCCAATTG
TACAACATGTCGAAAATCAAATTCAAATTGTATTTTTGCTCAGGACTGAG
TGTTGGCATATTTTGTTATTTCCCGATTTTTATCATTCGAAATTCAAAGA
TTGTTCTTGTACTTAATTTTGTAAATATGTCGACATACTTGTGAGACTGA
GCGCAGCAATGTTATCCTTCTATTTACATATTTTATTTATTTCCTAGCTT
CTATTCTTACTTTTGTGAAGTGTCATGTGTCGTTCATCTTAAGGTTGTTG
TGTATTTATCGAAAGCAATCCAATCCATCGGGCAGGCAGCAGAAGAGCAT
TGTAACGTTGCTGGCTGTCGCAGTCATGTGCCCAAATCTCGCGTGTTTTG
CAGATTTGCACGCATGCTGGGCAGTCAGGTCGCAAGTCGCTCCTTAAATT
AAGCACTCGTTTATGTAAACACAAGCAAATACTGTTTATACCTTTTTTGG
CCCTTACGCATTCGCTGTGCGCTGAAATGAACTGATGTTGTCCACCAGCT
GAAGCATTTCAGCGCACAATTCGAACCGCACTTATCATGTATAATGTTGC
TCTAAATTGAAATTATGTTCATAACTGATATTAGGAGACATCGCTGGGCC
AGCAAAGTGCCGGTCATGCTTTGCAAGTCGCAGCGAATCCAATTAATTAG
TCTAACGTAACCAACTATGAATGTAAAACGAAACGCATACGACTCTTTAT
ATCATACGGCTGCGAAATGATTCTTAATATGTAAATTGTACAACCGATTG
TAATATCCCTAGATGATATATCCTGTGAATTTCAATGTTCGTTGATATCT
CTACATACATGAATTCTGTCTCTATCGTTTTCCATAATCTAGCACTATTT
GCTGTACCCAAAAATTATAAGCTTGTTGCTGCGCCATTATTCGAGCTATA
CGACAACTCGCAAGGATATGGACCCATTATCTCATCTCTGCCGCAGGCCC
TCTGCAGATTCAACTTTATCTACATGTAAGGGCAGACGGAGGAGGGGCCC
ACGTCCAGCAATAGTTAAGCATCAACAGCAGCAGCAGCAGCACCAACGAT
AGCGCTACCTAACTGATTTCAGCACCACAGATCAGCCCGTAGATTTCCAT
TTCATGTGTGTGTGTAAACGTACATAATTGTATTGCAGATAAAATGGAAA
GCCAGTCTCTTTCACTTGGCAAATAGAGTCGACAAAATTTTGTGCTTTAT
TTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

SD03330.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689.b 2597 CG3689.b 147..2351 1..2205 10995 99.9 Plus
CG3689-RB 2348 CG3689-RB 147..2348 1..2202 10980 99.9 Plus
CG3689.a 1231 CG3689.a 401..831 364..794 2155 100 Plus
CG3689.a 1231 CG3689.a 831..1194 1842..2205 1820 100 Plus
CG3689.a 1231 CG3689.a 20..384 1..365 1810 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9404074..9405237 794..1957 5820 100 Plus
chr3L 24539361 chr3L 9402979..9403341 1..363 1815 100 Plus
chr3L 24539361 chr3L 9403399..9403663 364..628 1325 100 Plus
chr3L 24539361 chr3L 9405305..9405557 1952..2204 1265 100 Plus
chr3L 24539361 chr3L 9403735..9403902 627..794 840 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9412154..9413317 794..1957 5805 99.9 Plus
3L 28110227 3L 9411059..9411421 1..363 1800 99.7 Plus
3L 28110227 3L 9411479..9411743 364..628 1325 100 Plus
3L 28110227 3L 9413385..9413638 1952..2205 1270 100 Plus
3L 28110227 3L 9411815..9411982 627..794 840 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9405254..9406417 794..1957 5805 99.9 Plus
3L 28103327 3L 9404159..9404521 1..363 1800 99.7 Plus
3L 28103327 3L 9404579..9404843 364..628 1325 100 Plus
3L 28103327 3L 9406485..9406738 1952..2205 1270 100 Plus
3L 28103327 3L 9404915..9405082 627..794 840 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:55:15 has no hits.

SD03330.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:56:30 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9402979..9403341 1..363 100 -> Plus
chr3L 9403399..9403663 364..628 100 -> Plus
chr3L 9403737..9403902 629..794 100 -> Plus
chr3L 9404075..9405237 795..1957 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:54 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 218..829 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:56 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 218..829 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:38 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 218..829 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:58:36 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:23 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 218..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:10 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..2202 1..2202 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:56 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..2202 1..2202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:38 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 22..2225 1..2204 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:36 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..2202 1..2202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:23 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 22..2225 1..2204 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:30 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9411817..9411982 629..794 100 -> Plus
3L 9411059..9411421 1..363 99 -> Plus
3L 9411479..9411743 364..628 100 -> Plus
3L 9412155..9413317 795..1957 99 -> Plus
3L 9413391..9413637 1958..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:30 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9411817..9411982 629..794 100 -> Plus
3L 9411059..9411421 1..363 99 -> Plus
3L 9411479..9411743 364..628 100 -> Plus
3L 9412155..9413317 795..1957 99 -> Plus
3L 9413391..9413637 1958..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:30 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9411817..9411982 629..794 100 -> Plus
3L 9411059..9411421 1..363 99 -> Plus
3L 9411479..9411743 364..628 100 -> Plus
3L 9412155..9413317 795..1957 99 -> Plus
3L 9413391..9413637 1958..2204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:38 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404159..9404521 1..363 99 -> Plus
arm_3L 9404579..9404843 364..628 100 -> Plus
arm_3L 9404917..9405082 629..794 100 -> Plus
arm_3L 9405255..9406417 795..1957 99 -> Plus
arm_3L 9406491..9406737 1958..2204 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:00 Download gff for SD03330.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9404159..9404521 1..363 99 -> Plus
3L 9404579..9404843 364..628 100 -> Plus
3L 9404917..9405082 629..794 100 -> Plus
3L 9405255..9406417 795..1957 99 -> Plus
3L 9406491..9406737 1958..2204 100   Plus

SD03330.pep Sequence

Translation from 217 to 828

> SD03330.pep
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVP*

SD03330.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10694-PA 204 GF10694-PA 1..204 1..203 1060 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15373-PA 203 GG15373-PA 1..203 1..203 1082 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15136-PA 203 GH15136-PA 1..203 1..203 1034 97.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 203 CG3689-PB 1..203 1..203 1088 100 Plus
CG3689-PC 237 CG3689-PC 1..192 1..192 1027 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12073-PA 203 GI12073-PA 1..203 1..203 1027 96.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22627-PA 242 GL22627-PA 1..187 1..192 940 93.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17613-PA 198 GA17613-PA 1..198 1..203 989 93.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25145-PA 203 GM25145-PA 1..203 1..203 1082 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14179-PA 203 GD14179-PA 1..203 1..203 1082 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13342-PA 203 GJ13342-PA 1..203 1..203 1027 96.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17156-PA 205 GK17156-PA 1..205 1..203 1000 94.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20835-PA 203 GE20835-PA 1..203 1..203 1082 100 Plus

SD03330.hyp Sequence

Translation from 217 to 828

> SD03330.hyp
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVP*

SD03330.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 203 CG3689-PB 1..203 1..203 1088 100 Plus
CG3689-PC 237 CG3689-PC 1..192 1..192 1027 100 Plus