Clone SD03340 Report

Search the DGRC for SD03340

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:33
Well:40
Vector:pOT2
Associated Gene/TranscriptCG15478-RA
Protein status:SD03340.pep: gold
Preliminary Size:2021
Sequenced Size:1933

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15478 2001-07-04 Blastp of sequenced clone
CG15478 2003-01-01 Sim4 clustering to Release 3
CG15478 2008-04-29 Release 5.5 accounting

Clone Sequence Records

SD03340.complete Sequence

1933 bp (1933 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052081

> SD03340.complete
TTTACGGTTCGAGATTAACGAGAAAATCTTGTAAAAACCTTTTAACAAAA
AAAAAATACTCCATGGTATCTTAAACAAATTTGGCGAACAAAATATCTAG
CCACAGTAAATGGAGAAGTCTTCAACAATTTCCTAAACATTTAAGACATT
TTTTTTGCGTGCCAATAAAACGACAACGAAACTGCAAGAACGCCTTGTAT
GGAGCAGCAGCAATGAAGGACAGCAGTAACAGCATCTCGTCGAGCAACAC
AGCAGGGATGCCATGCTCAACGGGAGGAGCAGTAGCGTCAGCAGGGGTAA
CCACCAGCAATGCCACGCCCAGTGCGCCTAGTACGCCCACAACAGCAGCA
GCAGCAGCAGCAGCAGCGGCGGCAGCAGCATCTGCTGCAGATCCAACCGC
AACGAATCCGCAAAATCCGCAGCAACGCAGCAAGAGCAACATCCATGAGC
TAAGAAATCAGGACTACGTCAGTCGTTTAATGGCAGCCACACCACCGTAT
TTGTATTCCGCACCCGTGGGACCAAATAATTTCTTTTTCAGCGATATGCT
GCGTTCCTTGGTGCAAGCGCGAAATAATGAGACGGCGCGTGTCTTGCAGC
TGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGCACAGCAACAACAGCAG
CAGCAACATCAGGCCGCCTTGGTGAGGCGGCCAAGAAAACGCTCCTGGTC
GCATCGTCCATACTACGAGCAATTGCGGGAGCGACGCGATGCAGAGGAGA
AGCAGCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACAG
CATCAGCAGCAGCAACATCAGCAACTTCAGCAGCAACTGGTGCCGGAGAA
ACCTCTAGAGCTGACCAATAAGGCAATGACACCCTATGGCTATGCCAAAA
TGGAAACCAAACCAGGTGCTATGGGTATAACACCGCCAACGCCAACGACG
GCACCACCAACGGCTGGCAATAAGACTGGTGGTCTGGGTGGTGCCGTCGA
CACTAACCTGCAGGACAATACACCGCCGGCGGCATCGTTGCCACCACAGG
ATTTGGTCCTGCCGCCACCACCACCGGTTTGGTATCCACCACTTTATGCA
CCCTACGGCATCGATCCGTTGCACTTCTTCATCGATCTTCGCGTTTCCGG
ACATATATACGATAGAAAGAAGGAGAATGTCTCACCGCTTTCGAGTAGCA
ATAATGCACTTGCCGAAGAAGGTTCACCCGGCTCGTGTTCCAGCTCGGGC
GCCACTTCCGCTTCCGGTTTGGCCAGTAATTTGCTGAGCAAACAGCGTCA
TGGCTCCGCCTTCACTGTACCCATACCCAAGGCGGCCCAAAACGATGCCA
TCAATCTGTGCGCCAATGCGGCAGGATCAAACGCCGGCGGTGGTGGTGCA
GTGACCACCAGCACATTGGGCAACAAATTCGAGCACTATGCCAAATACTA
TGATCTGGGCGAGACTAAGGAAAATCAACCGTCCAGTACGGCTGCTAATC
TTTCGGCAGCCGCTGCTGCCGCTGCTGCAGCTGCAAACTTATCGAAATCG
GGCGCCAGCTATATGTTGCAACATCTGCCACGCCTTTACAGTCAGTTTGC
CGCCCATCAGGCGCAGGTGCAGAGTCAGGATATCGATGCCAAGTCGGAAT
CGGCATCGGTTAGTGCCTCACTTTCGGCACCCGATCTTTGCGATGAAGAT
TCACTGGAACGAAATTCCAGTGATACGGGTGCCGGTTTGGAGGGAACGAG
CGGCAATCAGGGCAATTGTGACATCGATGTGGAGATCATTGACTCCATCA
AGTATCGCACGGATGGCGAGAGCAGTCGATGTTCCAGCAATGACGAGGCT
TCCATCACGCAAATCGATTGAGGCTACTTATTTAAATAATACGAATAAAG
TTAATGTGTCCATAAAAAAAAAAAAAAAAAAAA

SD03340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15478-RA 1939 CG15478-RA 137..1849 203..1915 8565 100 Plus
CG15478-RB 1855 CG15478-RB 145..1855 203..1913 8555 100 Plus
CHES-1-like-RA 6585 CHES-1-like-RA 63..270 1..206 985 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7604712..7606422 1913..203 8555 100 Minus
chrX 22417052 chrX 7588407..7588612 204..1 965 99 Minus
chr3R 27901430 chr3R 3103205..3103277 848..776 185 83.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:46:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7712781..7714493 1915..203 8565 100 Minus
X 23542271 X 7696477..7696682 204..1 965 99 Minus
3R 32079331 3R 7277092..7277164 848..776 185 83.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7720879..7722591 1915..203 8565 100 Minus
X 23527363 X 7704575..7704780 204..1 975 99 Minus
Blast to na_te.dros performed on 2019-03-16 23:51:02 has no hits.

SD03340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:52 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7604712..7605789 836..1913 100 == Minus
chrX 7605875..7605962 663..750 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:58:55 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 1..1659 213..1871 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:07 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RB 1..1659 213..1871 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:25:46 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 1..1659 213..1871 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:22 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 1..1659 213..1871 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:14 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 1..1659 213..1871 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:37 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 135..1845 199..1911 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:06 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RB 136..1855 195..1913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:25:46 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 139..1851 199..1913 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:23 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 135..1845 199..1911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:14 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 139..1851 199..1913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:52 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
X 7712783..7714493 203..1913 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:52 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
X 7712783..7714493 203..1913 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:52 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
X 7712783..7714493 203..1913 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:25:46 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7606816..7608526 203..1913 100 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:02 Download gff for SD03340.complete
Subject Subject Range Query Range Percent Splice Strand
X 7720881..7722591 203..1913 100 == Minus

SD03340.hyp Sequence

Translation from 203 to 1870

> SD03340.hyp
AAAMKDSSNSISSSNTAGMPCSTGGAVASAGVTTSNATPSAPSTPTTAAA
AAAAAAAAASAADPTATNPQNPQQRSKSNIHELRNQDYVSRLMAATPPYL
YSAPVGPNNFFFSDMLRSLVQARNNETARVLQLQQQQQQQQQQAQQQQQQ
QHQAALVRRPRKRSWSHRPYYEQLRERRDAEEKQQQHQQQQQQQQQHQQH
QQQQHQQLQQQLVPEKPLELTNKAMTPYGYAKMETKPGAMGITPPTPTTA
PPTAGNKTGGLGGAVDTNLQDNTPPAASLPPQDLVLPPPPPVWYPPLYAP
YGIDPLHFFIDLRVSGHIYDRKKENVSPLSSSNNALAEEGSPGSCSSSGA
TSASGLASNLLSKQRHGSAFTVPIPKAAQNDAINLCANAAGSNAGGGGAV
TTSTLGNKFEHYAKYYDLGETKENQPSSTAANLSAAAAAAAAAANLSKSG
ASYMLQHLPRLYSQFAAHQAQVQSQDIDAKSESASVSASLSAPDLCDEDS
LERNSSDTGAGLEGTSGNQGNCDIDVEIIDSIKYRTDGESSRCSSNDEAS
ITQID*

SD03340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15478-PB 552 CG15478-PB 1..552 4..555 2842 100 Plus
CG15478-PA 552 CG15478-PA 1..552 4..555 2842 100 Plus
Smr-PF 3601 CG4013-PF 118..513 117..490 221 24.7 Plus
Smr-PE 3601 CG4013-PE 118..513 117..490 221 24.7 Plus
Smr-PD 3601 CG4013-PD 118..513 117..490 221 24.7 Plus
Smr-PF 3601 CG4013-PF 3..179 50..232 178 31.4 Plus
Smr-PE 3601 CG4013-PE 3..179 50..232 178 31.4 Plus

SD03340.pep Sequence

Translation from 212 to 1870

> SD03340.pep
MKDSSNSISSSNTAGMPCSTGGAVASAGVTTSNATPSAPSTPTTAAAAAA
AAAAAASAADPTATNPQNPQQRSKSNIHELRNQDYVSRLMAATPPYLYSA
PVGPNNFFFSDMLRSLVQARNNETARVLQLQQQQQQQQQQAQQQQQQQHQ
AALVRRPRKRSWSHRPYYEQLRERRDAEEKQQQHQQQQQQQQQHQQHQQQ
QHQQLQQQLVPEKPLELTNKAMTPYGYAKMETKPGAMGITPPTPTTAPPT
AGNKTGGLGGAVDTNLQDNTPPAASLPPQDLVLPPPPPVWYPPLYAPYGI
DPLHFFIDLRVSGHIYDRKKENVSPLSSSNNALAEEGSPGSCSSSGATSA
SGLASNLLSKQRHGSAFTVPIPKAAQNDAINLCANAAGSNAGGGGAVTTS
TLGNKFEHYAKYYDLGETKENQPSSTAANLSAAAAAAAAAANLSKSGASY
MLQHLPRLYSQFAAHQAQVQSQDIDAKSESASVSASLSAPDLCDEDSLER
NSSDTGAGLEGTSGNQGNCDIDVEIIDSIKYRTDGESSRCSSNDEASITQ
ID*

SD03340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21120-PA 569 GF21120-PA 56..569 33..552 1329 75.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17613-PA 557 GG17613-PA 17..557 14..552 1726 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24871-PA 584 GH24871-PA 88..584 74..552 1203 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15478-PB 552 CG15478-PB 1..552 1..552 2842 100 Plus
CG15478-PA 552 CG15478-PA 1..552 1..552 2842 100 Plus
Smr-PF 3601 CG4013-PF 118..513 114..487 221 24.7 Plus
Smr-PE 3601 CG4013-PE 118..513 114..487 221 24.7 Plus
Smr-PD 3601 CG4013-PD 118..513 114..487 221 24.7 Plus
Smr-PG 3607 CG4013-PG 118..519 114..487 218 24.6 Plus
CG42389-PE 2064 CG42389-PE 411..780 20..374 211 27 Plus
nej-PE 3266 CG15319-PE 1210..1582 121..547 207 25 Plus
nej-PB 3276 CG15319-PB 1210..1582 121..547 207 25 Plus
nej-PD 3276 CG15319-PD 1210..1582 121..547 207 25 Plus
nej-PC 3282 CG15319-PC 1216..1588 121..547 207 25 Plus
CG6026-PB 1555 CG6026-PB 311..484 25..213 195 31.6 Plus
cpo-PP 841 CG43738-PP 646..835 23..210 193 30.8 Plus
CHES-1-like-PC 1267 CG12690-PC 279..613 172..517 191 25.4 Plus
CHES-1-like-PD 1268 CG12690-PD 279..613 172..517 191 25.4 Plus
CHES-1-like-PB 1268 CG12690-PB 279..613 172..517 191 25.4 Plus
CHES-1-like-PA 1268 CG12690-PA 279..613 172..517 191 25.4 Plus
Efa6-PH 1601 CG31158-PH 736..937 4..274 191 26.6 Plus
Hr4-PC 1518 CG43934-PC 304..596 5..217 190 27 Plus
Hr4-PD 1529 CG43934-PD 314..606 5..217 190 27 Plus
Hr4-PF 1611 CG43934-PF 397..689 5..217 190 27 Plus
Hr4-PE 1842 CG43934-PE 628..920 5..217 190 27 Plus
Hr4-PK 1843 CG43934-PK 628..920 5..217 190 27 Plus
Hr4-PJ 1843 CG43934-PJ 628..920 5..217 190 27 Plus
Hr4-PH 1863 CG43934-PH 304..596 5..217 190 27 Plus
Hr4-PG 1986 CG43934-PG 771..1063 5..217 190 27 Plus
Hr4-PI 2123 CG43934-PI 304..596 5..217 190 27 Plus
CG14441-PD 1149 CG14441-PD 818..1025 3..222 189 29.3 Plus
CG14441-PC 1149 CG14441-PC 818..1025 3..222 189 29.3 Plus
CG14441-PB 1149 CG14441-PB 818..1025 3..222 189 29.3 Plus
CG14441-PA 1149 CG14441-PA 818..1025 3..222 189 29.3 Plus
ec-PA 1712 CG2904-PA 1375..1487 112..219 189 37.2 Plus
ec-PB 1746 CG2904-PB 1409..1521 112..219 189 37.2 Plus
ec-PC 1765 CG2904-PC 1428..1540 112..219 189 37.2 Plus
fs(1)h-PB 2038 CG2252-PB 1468..1806 105..518 189 25.1 Plus
fs(1)h-PG 2046 CG2252-PG 1476..1814 105..518 189 25.1 Plus
X11Lbeta-PD 2066 CG32677-PD 386..478 128..205 184 49.5 Plus
X11Lbeta-PE 2129 CG32677-PE 386..478 128..205 184 49.5 Plus
X11Lbeta-PA 2139 CG32677-PA 386..478 128..205 184 49.5 Plus
CG44085-PM 864 CG44085-PM 158..365 17..216 183 31.4 Plus
Ncoa6-PC 2265 CG14023-PC 1021..1236 3..211 183 30 Plus
Ncoa6-PD 2266 CG14023-PD 1022..1237 3..211 183 30 Plus
Ptip-PA 2294 CG32133-PA 734..905 61..212 183 33.7 Plus
CG44085-PO 2381 CG44085-PO 158..365 17..216 183 31.4 Plus
Ncoa6-PF 2467 CG14023-PF 1022..1237 3..211 183 30 Plus
Rbp6-PB 499 CG32169-PB 248..400 125..266 181 34.6 Plus
Ptip-PA 2294 CG32133-PA 199..265 131..208 181 51.2 Plus
Ptip-PA 2294 CG32133-PA 1157..1339 126..286 181 33.2 Plus
rn-PC 692 CG42277-PC 411..561 39..214 181 34.4 Plus
rn-PF 927 CG42277-PF 646..796 39..214 181 34.4 Plus
rn-PE 946 CG42277-PE 665..815 39..214 181 34.4 Plus
rn-PG 952 CG42277-PG 665..815 39..214 181 34.4 Plus
CG44085-PH 756 CG44085-PH 214..437 17..214 180 30.7 Plus
Smr-PF 3601 CG4013-PF 3..179 47..229 178 31.4 Plus
Smr-PE 3601 CG4013-PE 3..179 47..229 178 31.4 Plus
Smr-PD 3601 CG4013-PD 3..179 47..229 178 31.4 Plus
rn-PC 692 CG42277-PC 406..552 31..216 178 34.4 Plus
rn-PF 927 CG42277-PF 641..787 31..216 178 34.4 Plus
rn-PE 946 CG42277-PE 660..806 31..216 178 34.4 Plus
rn-PG 952 CG42277-PG 660..806 31..216 178 34.4 Plus
X11Lbeta-PD 2066 CG32677-PD 377..477 121..207 177 48.5 Plus
X11Lbeta-PE 2129 CG32677-PE 377..477 121..207 177 48.5 Plus
X11Lbeta-PA 2139 CG32677-PA 377..477 121..207 177 48.5 Plus
Ptip-PA 2294 CG32133-PA 1058..1209 66..220 175 36.2 Plus
Smr-PG 3607 CG4013-PG 3..161 47..211 173 32.9 Plus
Ncoa6-PC 2265 CG14023-PC 267..536 14..244 164 28.1 Plus
Ncoa6-PD 2266 CG14023-PD 268..537 14..244 164 28.1 Plus
Ncoa6-PF 2467 CG14023-PF 268..537 14..244 164 28.1 Plus
Ncoa6-PC 2265 CG14023-PC 795..950 124..259 161 34.8 Plus
Ncoa6-PD 2266 CG14023-PD 796..951 124..259 161 34.8 Plus
Ncoa6-PF 2467 CG14023-PF 796..951 124..259 161 34.8 Plus
ec-PA 1712 CG2904-PA 1392..1628 71..288 159 26.2 Plus
ec-PB 1746 CG2904-PB 1426..1662 71..288 159 26.2 Plus
ec-PC 1765 CG2904-PC 1445..1681 71..288 159 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14702-PA 577 GI14702-PA 90..577 74..552 1179 66.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14603-PA 441 GL14603-PA 1..441 112..552 1085 70.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27680-PA 557 GA27680-PA 14..557 13..552 1433 73.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17462-PA 510 GM17462-PA 311..510 353..552 795 98.5 Plus
Dsec\GM17462-PA 510 GM17462-PA 81..293 13..234 645 89.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24580-PA 331 GD24580-PA 1..331 222..552 1720 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16766-PA 548 GJ16766-PA 82..548 74..552 1218 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25581-PA 556 GK25581-PA 57..556 53..552 1146 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17514-PA 567 GE17514-PA 18..567 14..552 1708 86.5 Plus