Clone SD03467 Report

Search the DGRC for SD03467

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:34
Well:67
Vector:pOT2
Associated Gene/TranscriptSec5-RA
Protein status:SD03467.pep: gold
Preliminary Size:3162
Sequenced Size:2878

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8843 2001-01-01 Release 2 assignment
CG8843 2001-11-09 Blastp of sequenced clone
CG8843 2003-01-01 Sim4 clustering to Release 3
sec5 2008-04-29 Release 5.5 accounting
sec5 2008-08-15 Release 5.9 accounting
sec5 2008-12-18 5.12 accounting

Clone Sequence Records

SD03467.complete Sequence

2878 bp (2878 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069793

> SD03467.complete
AAAGTTCTGTTCTCTATTGTTTTTATTGCATTTTGATCAGTTTTTCCGCA
TCATATAGCATACGATGGCGCCGCAGCCAGTGGTTACGGGGCTATCTCCG
AAGGAGGGTCCTCCTGGCACCCGCGTTATCATTCGCGGCGAGTTCCTGGG
CACCCGAGTGCAAGATCTAATTGGTCTAAAAATCTGCGGTTCAGATTGTC
TGCTGTCGGCGGAGTGGAAATCACCCAATAAAATCATCGCACGCACTGGT
CCGGCGAAGGGAAAAGGCGATATCATAGTGACCACTTTAAGCGGCGGAGT
GGGCACGTCCACGGTTCAGTTTCGTGCATACCACGAGACCATTGGCCCGC
TCAAGGAGTCCGCCGTGTGGATCGAGGAGTCGCCCTCGCAGAATTTTGCC
TGGGGTCGGCGCACCCTAGCCCAATCCGGACTGACGCAGGAGGATCCACT
TGGGCTGTCCATCGAGGGTAACGAGCAGAAGATCCCCGAGGACCTCCGCG
ATCTCTTTCCCGAAGCCTGCGGGGATCTGTCGCAGGAGCACTTCTCCCCG
GCCTGGTTCCTGCTTGAAAATCACCTGGCCACCTCCTTCGAGGATCTCAA
GGCGGGCCTGTCCTACTTGAAGCGGAAAGTGGAAAGCCAGAAGGAAGGTC
AGTTGTCCTTCCTCAAGTCCAATGCAGGCTCGGTGATTGACCAGCTCGAT
ACGCTGATGAACATCCGAGACAAGCTACAGGAGGATGTCAAGCTACACGG
CAATGAGACCCTAAATATCTTGGAAACATCCATAGAGAACTCCATTAGCG
AATCGCAAAAGATATTCACGGATGTGCTGGTGCGCAAAGAGAAGGCGGAT
TCCACGCGGTCCGTTCTGTTCGCCCTGTCGCGGCACAAGTTCCTCTTCTG
TCTGCCCAATTCGGTGGACAGACGTGCCAAGGCGGGTGAATATGACATTG
TGGTTAACGACTACTCGCGCGCCAAGAACCTCTTTGGCAAGACGGAGATT
CCCATTTTCCGCAAGGTGCTCGAGGAGGTCGACCACAGGATTCTGTCAAT
AAGGAAACAACTGCACGAGAAGGTGGTCAAGATGCCACAGAGCGTGGAGC
AACAGAAGAAGCTCATCAAGGCGCTGATCAGTCTGGAACTGCAGCAGAGC
GGAACTCCCATTGGCGATAAACTGCGCAACATCGATCCCGCCTGGGATGC
CATCGAGGCCAGAGCCAAATATCTGGAGTGGACATTTCGCCAGACATTTG
ATCAGCACACCAGCAAGGATTCGGGTGCCCAGGAAAAGGCAAAGAACAGG
GATTCCAGCCAGGCGCCCAATCGGGTTAACTTCTGCGAAGAACTGTGCGA
CATTGCCGCCTCCCAGCTGCCGGACTTGTGGCGTCTGGGCCAGCTATACT
TCACCGGCGAGCTACGCGGACCTCATGATCCCAAGCCAGGGGATTTCAAG
CGAATGGTTTTGAACGCCATCGAGAAGTTCTGTGTCTACTTGAGGTTGGC
CATTCTCATTGCCACGGATCAGCGCGCCCTGCGTCAGTCCAGCGGCTTGG
CTTGGCCCATCGGCTCCGCATCGGCAACACATCAGTTTCTACCCTGGATT
CCGCAGTGCCTGCGTTTCACGAGGATAGCCTATGCCACGCTCATCAGCCT
GGATCTGCCCTCGGAAGCGCTGGACATCATACAGAAACTGATCGATGAGG
TGCGACTTTTCTGCTTCTCAATTATCTTCAAACGGGCCACGGATCGGTGC
AAAAAGCTGGGCAGCCAGGAGACCTGGGAACTGGGCGTGGAGGAATATCC
AGGTGCCACATTGTTACCCGCCGCCTTGGAAACATTGCTCATCGAAACGC
TGGACGAGGTGCAATCTGTGTGCATGCAAAGGGAGACCCGGGAGGGCAAT
CTCCTCGAGCCGCAGTCGGATGGACAGAGAGAGGTGACACAGCGACTACA
AGAATTCCTATCCGCGTTTAGCGCGGTGATCGAGGAGCTGGCCTTCCACT
CCCACGACGAGGAGACGCCCACCCACAATGTGTCGCAGCTACTTGGATTC
CCCAATGCCCAGCAGCCAGATTCGGTGGCTGGAAGCGGCGGAGCAGCGGC
TGTGACCTGGGAGCAGCGCATGCTCTGTTGCCTGGCCAACTATGCGTACT
GCAACAAGATCTTCTTCCCGCGCCTTGGTGACATCTTCGTTCGCTACGGT
TACCCGCTGCCCACGCTGGCAATCGAAACTGCTCGCTACACGGTTAACCA
GCTCTTTACCAATCTTCTGGAGGAGTACGTCGAGCATAAGGGCGATCCGC
TGGTCGGCACCATCGAGCCCTCCATGTATCTGGGTCGTTTCCAGTGGGAT
CACGAGATGGAGATCGGCCAGCTGCGTCCTTACGCTCACGAGTGCTGCGA
TAATTTGGTTGGTGTCTACTCCGAGATCTACAGCATTTCACCGGCACTGC
TGCGACCCATCCTGGAGTCCATTGTGCAAACGATATCCGAAGAGCTGGCC
CGTCTGATGAGCTGTGTCCAGCGCTTTAGCTTCACGGGAGCGATTCAGGC
CCACGTGGATATCCGTCTATTGAGGGACTCCCTGGAAGGTTACGTCAATG
AGACTGCCAAGAACTACTTCATGGAAGCGCTGGAGGCCATCAATCCGCCC
CTGAGTGGCGAGCAGAAGCGTAAGGCGGACGAGATTCTGGAGCGGGTCAA
GCGGAACATGCGTCTGCAGCTGCTCTGCTTCAGTGTCAAGGACCCCTAGG
CACATTCCACTGCAGGGCGCAGCCCATGTAGATAGCGTATACTTTAACTA
GCTTGTGATTACCCATGTTCTAGGGATAAATCTTTATTCGATTGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD03467.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
sec5-RA 2896 sec5-RA 42..2887 1..2846 14170 99.8 Plus
CG3246-RA 1589 CG3246-RA 1536..1589 2846..2793 255 98.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3457826..3459648 789..2611 8920 99.3 Plus
chr2L 23010047 chr2L 3457156..3457771 173..788 2915 98.2 Plus
chr2L 23010047 chr2L 3459705..3459939 2611..2845 1160 99.6 Plus
chr2L 23010047 chr2L 3456916..3457090 1..175 815 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3458254..3460076 789..2611 9100 99.9 Plus
2L 23513712 2L 3457584..3458199 173..788 3050 99.7 Plus
2L 23513712 2L 3460133..3460368 2611..2846 1165 99.6 Plus
2L 23513712 2L 3457342..3457516 1..175 875 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3458254..3460076 789..2611 9100 99.9 Plus
2L 23513712 2L 3457584..3458199 173..788 3050 99.6 Plus
2L 23513712 2L 3460133..3460368 2611..2846 1165 99.5 Plus
2L 23513712 2L 3457342..3457516 1..175 875 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:55:26 has no hits.

SD03467.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:56:34 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3456916..3457088 1..173 97 -> Plus
chr2L 3457157..3457771 174..788 98 -> Plus
chr2L 3457826..3459647 789..2610 99 -> Plus
chr2L 3459705..3459939 2611..2845 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:06 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 1..2685 65..2749 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:03 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 1..2685 65..2749 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:42 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 1..2685 65..2749 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:54 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 1..2685 65..2749 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:31 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
Sec5-RA 1..2685 65..2749 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:01 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 14..2858 1..2845 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:03 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 14..2858 1..2845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:42 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 41..2885 1..2845 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:55 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
sec5-RA 14..2858 1..2845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:31 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
Sec5-RA 41..2885 1..2845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:34 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3457342..3457514 1..173 100 -> Plus
2L 3457585..3458199 174..788 99 -> Plus
2L 3458254..3460075 789..2610 99 -> Plus
2L 3460133..3460367 2611..2845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:34 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3457342..3457514 1..173 100 -> Plus
2L 3457585..3458199 174..788 99 -> Plus
2L 3458254..3460075 789..2610 99 -> Plus
2L 3460133..3460367 2611..2845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:34 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3457342..3457514 1..173 100 -> Plus
2L 3457585..3458199 174..788 99 -> Plus
2L 3458254..3460075 789..2610 99 -> Plus
2L 3460133..3460367 2611..2845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:42 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3457342..3457514 1..173 100 -> Plus
arm_2L 3457585..3458199 174..788 99 -> Plus
arm_2L 3458254..3460075 789..2610 99 -> Plus
arm_2L 3460133..3460367 2611..2845 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:58 Download gff for SD03467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3457585..3458199 174..788 99 -> Plus
2L 3458254..3460075 789..2610 99 -> Plus
2L 3460133..3460367 2611..2845 99   Plus
2L 3457342..3457514 1..173 100 -> Plus

SD03467.pep Sequence

Translation from 64 to 2748

> SD03467.pep
MAPQPVVTGLSPKEGPPGTRVIIRGEFLGTRVQDLIGLKICGSDCLLSAE
WKSPNKIIARTGPAKGKGDIIVTTLSGGVGTSTVQFRAYHETIGPLKESA
VWIEESPSQNFAWGRRTLAQSGLTQEDPLGLSIEGNEQKIPEDLRDLFPE
ACGDLSQEHFSPAWFLLENHLATSFEDLKAGLSYLKRKVESQKEGQLSFL
KSNAGSVIDQLDTLMNIRDKLQEDVKLHGNETLNILETSIENSISESQKI
FTDVLVRKEKADSTRSVLFALSRHKFLFCLPNSVDRRAKAGEYDIVVNDY
SRAKNLFGKTEIPIFRKVLEEVDHRILSIRKQLHEKVVKMPQSVEQQKKL
IKALISLELQQSGTPIGDKLRNIDPAWDAIEARAKYLEWTFRQTFDQHTS
KDSGAQEKAKNRDSSQAPNRVNFCEELCDIAASQLPDLWRLGQLYFTGEL
RGPHDPKPGDFKRMVLNAIEKFCVYLRLAILIATDQRALRQSSGLAWPIG
SASATHQFLPWIPQCLRFTRIAYATLISLDLPSEALDIIQKLIDEVRLFC
FSIIFKRATDRCKKLGSQETWELGVEEYPGATLLPAALETLLIETLDEVQ
SVCMQRETREGNLLEPQSDGQREVTQRLQEFLSAFSAVIEELAFHSHDEE
TPTHNVSQLLGFPNAQQPDSVAGSGGAAAVTWEQRMLCCLANYAYCNKIF
FPRLGDIFVRYGYPLPTLAIETARYTVNQLFTNLLEEYVEHKGDPLVGTI
EPSMYLGRFQWDHEMEIGQLRPYAHECCDNLVGVYSEIYSISPALLRPIL
ESIVQTISEELARLMSCVQRFSFTGAIQAHVDIRLLRDSLEGYVNETAKN
YFMEALEAINPPLSGEQKRKADEILERVKRNMRLQLLCFSVKDP*

SD03467.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21589-PA 895 GF21589-PA 1..895 1..894 4550 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24944-PA 887 GG24944-PA 1..887 1..894 4687 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11584-PA 899 GH11584-PA 1..899 1..894 4361 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sec5-PA 894 CG8843-PA 1..894 1..894 4625 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17153-PA 900 GI17153-PA 1..900 1..894 4300 89.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19244-PA 896 GL19244-PA 1..896 1..894 4432 92.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21362-PA 897 GA21362-PA 1..897 1..894 4463 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11139-PA 894 GM11139-PA 1..894 1..894 4762 99.4 Plus
Dsec\GM22585-PA 879 GM22585-PA 1..879 1..894 4390 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23233-PA 894 GD23233-PA 1..894 1..894 4776 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17657-PA 895 GJ17657-PA 1..895 1..894 4408 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23817-PA 894 GK23817-PA 1..894 1..894 4405 92.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18235-PA 894 GE18235-PA 1..894 1..894 4761 99.6 Plus

SD03467.hyp Sequence

Translation from 64 to 2748

> SD03467.hyp
MAPQPVVTGLSPKEGPPGTRVIIRGEFLGTRVQDLIGLKICGSDCLLSAE
WKSPNKIIARTGPAKGKGDIIVTTLSGGVGTSTVQFRAYHETIGPLKESA
VWIEESPSQNFAWGRRTLAQSGLTQEDPLGLSIEGNEQKIPEDLRDLFPE
ACGDLSQEHFSPAWFLLENHLATSFEDLKAGLSYLKRKVESQKEGQLSFL
KSNAGSVIDQLDTLMNIRDKLQEDVKLHGNETLNILETSIENSISESQKI
FTDVLVRKEKADSTRSVLFALSRHKFLFCLPNSVDRRAKAGEYDIVVNDY
SRAKNLFGKTEIPIFRKVLEEVDHRILSIRKQLHEKVVKMPQSVEQQKKL
IKALISLELQQSGTPIGDKLRNIDPAWDAIEARAKYLEWTFRQTFDQHTS
KDSGAQEKAKNRDSSQAPNRVNFCEELCDIAASQLPDLWRLGQLYFTGEL
RGPHDPKPGDFKRMVLNAIEKFCVYLRLAILIATDQRALRQSSGLAWPIG
SASATHQFLPWIPQCLRFTRIAYATLISLDLPSEALDIIQKLIDEVRLFC
FSIIFKRATDRCKKLGSQETWELGVEEYPGATLLPAALETLLIETLDEVQ
SVCMQRETREGNLLEPQSDGQREVTQRLQEFLSAFSAVIEELAFHSHDEE
TPTHNVSQLLGFPNAQQPDSVAGSGGAAAVTWEQRMLCCLANYAYCNKIF
FPRLGDIFVRYGYPLPTLAIETARYTVNQLFTNLLEEYVEHKGDPLVGTI
EPSMYLGRFQWDHEMEIGQLRPYAHECCDNLVGVYSEIYSISPALLRPIL
ESIVQTISEELARLMSCVQRFSFTGAIQAHVDIRLLRDSLEGYVNETAKN
YFMEALEAINPPLSGEQKRKADEILERVKRNMRLQLLCFSVKDP*

SD03467.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sec5-PA 894 CG8843-PA 1..894 1..894 4625 100 Plus