Clone SD03549 Report

Search the DGRC for SD03549

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:49
Vector:pOT2
Associated Gene/Transcriptesc-RA
Protein status:SD03549.pep: gold
Preliminary Size:1722
Sequenced Size:1744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14941 2001-01-01 Release 2 assignment
CG14941 2001-11-09 Blastp of sequenced clone
CG14941 2003-01-01 Sim4 clustering to Release 3
esc 2008-04-29 Release 5.5 accounting
esc 2008-08-15 Release 5.9 accounting
esc 2008-12-18 5.12 accounting

Clone Sequence Records

SD03549.complete Sequence

1744 bp (1744 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069796

> SD03549.complete
GGTCACACCATTGCCGCCAAAAAAAAACATTTTCATTCGCCTCGTTATTT
AAACATTTAAAAAAAGCATTATCGAATAGTTCATTGAAGTCGCGGCCTAA
TTTGGGTTTCATTTAACCGTACAAACGTGCCGCGCTTTCGAAATGAGCAG
TGATAAAGTGAAAAACGGCAACGAGCCCGAGGAGTCGGAGGAATCATGCG
GCGATGAGTCGGCCAGCTATACCACCAACAGCACCACCTCGCGCAGCAAG
TCCCCGTCATCCAGCACGCGCAGCAAGCGCCGCGGTCGCCGGAGCACCAA
ATCGAAGCCAAAAAGTCGCGCCGCCTACAAATACGACACCCACGTGAAGG
AGAACCACGGAGCCAACATCTTCGGCGTAGCCTTCAACACGCTGCTGGGC
AAGGATGAGCCACAGGTCTTCGCTACGGCGGGCAGCAACCGGGTGACCGT
CTACGAGTGCCCTCGACAGGGCGGGATGCAGCTGCTCCACTGCTATGCAG
ATCCGGATCCCGATGAAGTATTTTACACCTGCGCCTGGTCGTACGACCTT
AAGACCTCTTCACCTCTCCTGGCCGCTGCTGGATACCGCGGAGTCATCCG
GGTTATTGATGTCGAGCAGAATGAGGCGGTGGGCAACTACATTGGCCATG
GACAGGCCATTAACGAGCTGAAGTTCCATCCGCACAAGCTACAGCTTTTG
CTTTCGGGCAGCAAGGATCACGCGATAAGATTGTGGAACATCCAGAGCCA
TGTGTGCATTGCCATCCTGGGCGGAGTGGAGGGACATCGCGATGAGGTGC
TGTCCATCGACTTTAATATGCGTGGAGATCGCATTGTGTCGAGCGGCATG
GATCACTCGCTGAAGCTGTGGTGTCTGAATACGCCCGAGTTCCATCACAA
GATCGAACTGTCGAACACTTTCAGCCAGGAGAAGTCAACGCTGCCTTTCC
CCACGGTGACCAAGCACTTCCCCGATTTTTCAACGCGGGATATACACAGG
AACTATGTGGACTGTGTGCAGTGGTTCGGCAACTTTGTGCTCTCCAAGTC
CTGCGAAAATGCCATTGTCTGCTGGAAGCCGGGACAACTACATCAGAGTT
TCGAGCAGGTGAAGCCGAGCGACTCCTCCTGCACGATAATCGCGGAATTC
GAGTACGATGAGTGCGAGATCTGGTTCGTGAGATTCGGCTTCAATCCGTG
GCAGAAGGTGATTGCCCTGGGCAATCAGCAGGGCAAGGTGTATGTGTGGG
AGCTGGATCCCAGCGATCCCGAGGGCGCACACATGACCACCCTGCACAAT
TCGCGTAGCGTGGCCACTGTGCGCCAGATCGCCTTCTCCCGCGATGCCAG
CGTACTGGTCTACGTGTGCGATGACGCCACCGTGTGGCGATGGAACCGCA
GACAAACGACTTCCATCTGATGGCGCAGCTGGGCGCAACCACAAACCAAA
TCTCACGTGGCCAAAACTTACAACATTTCCCTCAATTAGTTCCTAGTTGG
TTAGCATTAAGATATAGAATTACGCTCCTGTGCTGTTCCAAATTATTTCA
AGTAAATCCAATTAATAGTTGGATGAGATTTAAATATGTTAAGCCGGTTG
CTTTTTAGATGTAAGAACGAATAGTTGTTGCTTACTCCGCTGCCTTTATT
TATTGTAAATAAAGTGAGTACATTGTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD03549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
esc.a 1968 esc.a 26..1703 1..1678 8255 99.4 Plus
esc.b 2124 esc.b 26..1703 1..1678 8255 99.4 Plus
esc-RA 1871 esc-RA 88..1765 1..1678 8255 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11825865..11827032 1676..509 5795 99.7 Minus
chr2L 23010047 chr2L 11827836..11828038 203..1 1000 99.5 Minus
chr2L 23010047 chr2L 11827397..11827568 508..337 860 100 Minus
chr2L 23010047 chr2L 11827631..11827764 336..203 670 100 Minus
chr2L 23010047 chr2L 11990354..11990802 635..1083 325 71.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827202..11828371 1678..509 5730 99.3 Minus
2L 23513712 2L 11829175..11829377 203..1 1000 99.5 Minus
2L 23513712 2L 11828736..11828907 508..337 860 100 Minus
2L 23513712 2L 11828970..11829103 336..203 670 100 Minus
2L 23513712 2L 11991701..11992149 635..1083 325 71.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827202..11828371 1678..509 5730 99.3 Minus
2L 23513712 2L 11829175..11829377 203..1 1000 99.5 Minus
2L 23513712 2L 11828736..11828907 508..337 860 100 Minus
2L 23513712 2L 11828970..11829103 336..203 670 100 Minus
2L 23513712 2L 11992029..11992149 963..1083 230 79.3 Plus
2L 23513712 2L 11991836..11991954 770..888 220 78.9 Plus
2L 23513712 2L 11991701..11991748 635..682 165 89.5 Plus
2L 23513712 2L 11992228..11992301 1162..1235 145 79.7 Plus
Blast to na_te.dros performed on 2019-03-16 07:50:17 has no hits.

SD03549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:51:12 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11825865..11827032 509..1676 99 <- Minus
chr2L 11827397..11827568 337..508 100 <- Minus
chr2L 11827631..11827764 203..336 100 <- Minus
chr2L 11827837..11828038 1..202 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:10 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 143..1420 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:21 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 143..1420 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:31 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 143..1420 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:01 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 143..1420 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:04 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 143..1420 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:04 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 26..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:21 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 26..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:31 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 29..1704 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:02 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 26..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:04 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 29..1704 1..1676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:12 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11827204..11828371 509..1676 99 <- Minus
2L 11828736..11828907 337..508 100 <- Minus
2L 11828970..11829103 203..336 100 <- Minus
2L 11829176..11829377 1..202 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:12 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11827204..11828371 509..1676 99 <- Minus
2L 11828736..11828907 337..508 100 <- Minus
2L 11828970..11829103 203..336 100 <- Minus
2L 11829176..11829377 1..202 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:12 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11827204..11828371 509..1676 99 <- Minus
2L 11828736..11828907 337..508 100 <- Minus
2L 11828970..11829103 203..336 100 <- Minus
2L 11829176..11829377 1..202 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:31 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11829176..11829377 1..202 99   Minus
arm_2L 11827204..11828371 509..1676 99 <- Minus
arm_2L 11828736..11828907 337..508 100 <- Minus
arm_2L 11828970..11829103 203..336 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:37 Download gff for SD03549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11828736..11828907 337..508 100 <- Minus
2L 11828970..11829103 203..336 100 <- Minus
2L 11829176..11829377 1..202 99   Minus
2L 11827204..11828371 509..1676 99 <- Minus

SD03549.pep Sequence

Translation from 142 to 1419

> SD03549.pep
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSI*

SD03549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23390-PA 425 GF23390-PA 1..425 1..425 2139 94.6 Plus
Dana\GF15137-PA 466 GF15137-PA 76..464 41..419 1323 60.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10294-PA 688 GG10294-PA 310..688 46..425 1990 95.3 Plus
Dere\GG23752-PA 463 GG23752-PA 36..461 2..419 1335 58.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13070-PA 425 GH13070-PA 1..425 1..425 2140 93.2 Plus
Dgri\GH13063-PA 462 GH13063-PA 66..460 34..419 1309 58.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
esc-PA 425 CG14941-PA 1..425 1..425 2291 100 Plus
escl-PC 462 CG5202-PC 35..460 2..419 1356 58.4 Plus
escl-PA 462 CG5202-PA 35..460 2..419 1356 58.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17689-PA 426 GI17689-PA 1..426 1..425 2110 91.1 Plus
Dmoj\GI17683-PA 457 GI17683-PA 70..455 41..419 1287 59.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15273-PA 449 GL15273-PA 1..400 1..401 2004 89.5 Plus
Dper\GL18539-PA 463 GL18539-PA 41..461 8..419 1348 58.9 Plus
Dper\GL24512-PA 787 GL24512-PA 251..469 150..374 153 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13369-PA 424 GA13369-PA 1..424 1..425 2117 88.9 Plus
Dpse\GA18733-PA 463 GA18733-PA 41..461 8..419 1345 58.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26550-PA 425 GM26550-PA 1..425 1..425 2304 99.5 Plus
Dsec\GM26690-PA 462 GM26690-PA 35..460 2..419 1346 58.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22153-PA 425 GD22153-PA 1..425 1..425 2305 99.8 Plus
Dsim\GD23804-PA 462 GD23804-PA 35..460 2..419 1342 58.4 Plus
Dsim\GD13377-PA 169 GD13377-PA 58..163 21..122 217 45.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\esc-PA 425 GJ17475-PA 1..425 1..425 2179 92.9 Plus
Dvir\GJ17469-PA 454 GJ17469-PA 67..452 41..419 1277 59 Plus
Dvir\GJ19693-PA 488 GJ19693-PA 389..486 142..243 151 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14970-PA 418 GK14970-PA 3..418 10..425 2040 91.6 Plus
Dwil\GK15174-PA 455 GK15174-PA 44..453 21..419 1252 57.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12654-PA 675 GE12654-PA 297..675 46..425 1993 95.5 Plus
Dyak\GE18559-PA 462 GE18559-PA 35..460 2..419 1339 58.2 Plus

SD03549.hyp Sequence

Translation from 142 to 1419

> SD03549.hyp
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSI*

SD03549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
esc-PA 425 CG14941-PA 1..425 1..425 2291 100 Plus
escl-PC 462 CG5202-PC 35..460 2..419 1356 58.4 Plus
escl-PA 462 CG5202-PA 35..460 2..419 1356 58.4 Plus