Clone SD03555 Report

Search the DGRC for SD03555

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:55
Vector:pOT2
Associated Gene/TranscriptCG6665-RA
Protein status:SD03555.pep: wuzgold
Preliminary Size:1442
Sequenced Size:1382

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6665 2001-01-01 Release 2 assignment
CG6665 2001-11-09 Blastp of sequenced clone
CG6665 2003-01-01 Sim4 clustering to Release 3
CG6665 2008-04-29 Release 5.5 accounting
CG6665 2008-08-15 Release 5.9 accounting
CG6665 2008-12-18 5.12 accounting

Clone Sequence Records

SD03555.complete Sequence

1382 bp (1382 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069797

> SD03555.complete
CAACAAAGAATTTTCTTGAGAAAATTGTTTATTATTTCATATCCGCGAAT
TAAAAAGTATTCGCCATGGATGGGCATCTGCGCCTGCATAAGGTAGGCGA
CTACGCCGCACCGAGTCTTCAGGAGAAGGCCAGCAAGGCGGGCGGCAACA
TGGAACAGCTTTCGGGCGTGATGATAATCATCATAATCAGCGGAGGAGTA
CTTACTTGTCTGATGCTGTTCATCTTTGCCAAGCGGCAGATTATGCGCTT
TCAGCTGCGAGGACGTCGGGGGCCCCACGTTCCGGTAGGCAATGATGCCA
AGAAGGCACTAAGGAGAGAGATTGAGCGGCGCCTAGATTGCATCCAGAAA
ATCACGCAGGAGCCGAAACTGCTGTGGGACGATGGCGACAAGTACATCGT
TCAGCCGGAGCAGGAGGCACCATTGCCACCCTACTACTACCGCATGAAGG
CGGTTGATGACGTGAAACTGCTAGAATCCGAAATAGCGAGGGCGGACGGT
AGCTCCCGACATGCTCCTGAAAGTTTGAGGGCCTTTCTGCTGACCACTTT
ATCGGTGACGCTGAACGGAGCAGGGCAGCGAATGATTCACCAATATTGCG
ATATGTACGAACATGCTCGGCACGATCCGAATGAGTTCGGAAAGGATGAG
TACGAGGCGTATCACCATTTGCTGCTGAAGCTGATGGAGGCGTATGTGAA
CTAGACTAAAGAACTACAATTCTCGTAAGGCATCGCCTGCACGAACGCCC
AGAAAACAGACCAAAATGCATTCCCTACTAGATCCTGCGCGCCTGCGTCC
GCCCACGACATTGGAAAATGTGCAGCCCAGCAGTGAACTTAAGACTGGAC
AGCACGCCAAGGTTAATCTGACTCTGGGTCTGCAGGGAGGCGGTGGTGGC
GGTGGCGATGGTCCCGCCGAGCTAGCCACAAATCCTCTTCATCTTCAAGC
ACCCTCCGACAGAGATCTCATCATACGCAATAGAATTAAGACACCCACAC
TGGATGACATCATCGTAGAGGCGGACCACCATCAGAGCAGTGATGGAGGT
GTCATGGAGGACAATGAGATTAAGAGTATATCATCAATGCAGTTTCAGCG
GAACTCCAGCAATGTCTAAGACAATTTCCAAAGAATTCAGTCACTTTTTC
TTATTGGCTTTTATGTCTGCCAGGAAAATATGGGTATACATTTTTTTGTT
CTTTATTTATTTGTTGGAAAAAGGGCGAATAAAAGCCGATTGCATCCTAT
GCTATCTATAGTTTAGCCCATAAGAATTGCAAAATATGAAATCTGCGCCT
AAAACTATGGTAAAATGGATTACATTACATTAATTTTTAAGTAAATAAAG
ATTTCTAAATATAAAAAAAAAAAAAAAAAAAA

SD03555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6665-RA 1366 CG6665-RA 1..1365 1..1365 6750 99.6 Plus
CG6665-RC 1430 CG6665-RC 65..755 1..691 3380 99.2 Plus
CG6665-RC 1430 CG6665-RC 766..1425 706..1365 3300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12844696..12845400 1..705 3450 99.3 Plus
chr2R 21145070 chr2R 12845465..12846121 706..1362 3285 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16957502..16958206 1..705 3450 99.3 Plus
2R 25286936 2R 16958271..16958930 706..1365 3300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16958701..16959405 1..705 3450 99.2 Plus
2R 25260384 2R 16959470..16960129 706..1365 3300 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:51:52 has no hits.

SD03555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:48 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12844696..12845400 1..705 99 -> Plus
chr2R 12845465..12846082 706..1323 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:11 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..639 66..704 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:18 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..639 66..704 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:32 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RC 1..1050 66..1119 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:58 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..639 66..704 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:34:06 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RC 1..1050 66..1119 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:37 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..1362 1..1362 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:18 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..1362 1..1362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:32 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RC 38..1395 1..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:58 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RA 1..1362 1..1362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:06 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
CG6665-RC 38..1395 1..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:48 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16957502..16958206 1..705 99 -> Plus
2R 16958271..16958927 706..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:48 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16957502..16958206 1..705 99 -> Plus
2R 16958271..16958927 706..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:48 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16957502..16958206 1..705 99 -> Plus
2R 16958271..16958927 706..1362 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:32 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12845007..12845711 1..705 99 -> Plus
arm_2R 12845776..12846432 706..1362 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:24 Download gff for SD03555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16958701..16959405 1..705 99 -> Plus
2R 16959470..16960126 706..1362 100   Plus

SD03555.hyp Sequence

Translation from 65 to 703

> SD03555.hyp
MDGHLRLHKVGDYAAPSLQEKASKAGGNMEQLSGVMIIIIISGGVLTCLM
LFIFAKRQIMRFQLRGRRGPHVPVGNDAKKALRREIERRLDCIQKITQEP
KLLWDDGDKYIVQPEQEAPLPPYYYRMKAVDDVKLLESEIARADGSSRHA
PESLRAFLLTTLSVTLNGAGQRMIHQYCDMYEHARHDPNEFGKDEYEAYH
HLLLKLMEAYVN*

SD03555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6665-PC 349 CG6665-PC 1..209 1..209 1093 100 Plus

SD03555.pep Sequence

Translation from 65 to 703

> SD03555.pep
MDGHLRLHKVGDYAAPSLQEKASKAGGNMEQLSGVMIIIIISGGVLTCLM
LFIFAKRQIMRFQLRGRRGPHVPVGNDAKKALRREIERRLDCIQKITQEP
KLLWDDGDKYIVQPEQEAPLPPYYYRMKAVDDVKLLESEIARADGSSRHA
PESLRAFLLTTLSVTLNGAGQRMIHQYCDMYEHARHDPNEFGKDEYEAYH
HLLLKLMEAYVN*

SD03555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11426-PA 352 GF11426-PA 1..209 1..209 1056 92.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20648-PA 348 GG20648-PA 1..209 1..209 1111 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22952-PA 325 GH22952-PA 1..183 29..209 847 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6665-PC 349 CG6665-PC 1..209 1..209 1093 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18442-PA 315 GI18442-PA 1..181 29..209 815 87.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11575-PA 346 GL11575-PA 1..207 1..209 895 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19763-PA 346 GA19763-PA 1..207 1..209 894 87.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21743-PA 350 GM21743-PA 1..209 1..209 1118 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11236-PA 349 GD11236-PA 1..209 1..209 1119 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21526-PA 316 GJ21526-PA 1..181 29..209 827 89 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22037-PA 335 GK22037-PA 1..182 29..209 856 91.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11633-PA 347 GE11633-PA 1..209 1..209 1120 99.5 Plus