Clone SD03629 Report

Search the DGRC for SD03629

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:29
Vector:pOT2
Associated Gene/TranscriptCG2017-RA
Protein status:SD03629.pep: gold
Preliminary Size:2362
Sequenced Size:2285

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2017 2001-01-01 Release 2 assignment
CG2017 2001-07-04 Blastp of sequenced clone
CG2017 2003-01-01 Sim4 clustering to Release 3
CG2017 2008-04-29 Release 5.5 accounting
CG2017 2008-08-15 Release 5.9 accounting
CG2017 2008-12-18 5.12 accounting

Clone Sequence Records

SD03629.complete Sequence

2285 bp (2285 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052084

> SD03629.complete
CTCGTGCCGAAATGTAGGAAGTTTATGGTTTATAATAATTGATTGGATTG
CTGGCGCAACTTTGGCGTCCCCGAAATTTGAAGTGTGTTGTGAGTGCTTA
ACCCACATGAGTGCAAAATTGCCATGGCAACGTGAATCGAACACGAACAG
CAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTGGCGCAGTATT
GCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAGTCTCTTTGAT
CCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCAATGGCAACAG
CAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGACGCCAATGCCA
ACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGGCAACCTGATC
TTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGCTCGGAAATGT
GGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGATTCGAGCACC
TGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGGCGAGGCCATC
TACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGACTCAGCGACAA
GGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCCCACAGCCTAG
GAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGCCCGACGCGCC
GTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGCACAACATCGA
GGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAATCCACTTTGC
TGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGGCCGGGCGCGG
CTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCCGCACCTCCTG
CATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAATGTGGTCAACT
ACAAGTACAATGAGATGATGACGGCAGAGGAGATTAGCGACAGGTCCAGC
AAGCTGGTTACCTTCATGGATCTAGCCGGACACCGACGCTACATGCGCAC
CACCGTGCAGGCACTGAGTGGATACTCACCCCACTACGCCATGCTGGTGG
TATCGGCGGGCAGCGGTTGCAACGACACCACCGAGGAGCACTTGGCTATC
GTGCGGGCACTGGACATGCCCTTCTTTGTATTGGTCACGAAGACAGATAT
CACATCGCCGGACGCGACGGTACAGGAGTTGTGCAACCTGCTCACCACCA
TTGGGTGCCGGAAGGTTCCCTTTGTGGTGACCAACACGGATGAGGCCATC
TCCGCCGGGTCAAACCAGATCTCCGAGAACATTGTGCCCATCTTTTGCGT
ATCGAATGTGACCGGCACGGGACTCAACCTAGTCACAAAGTTTCTGTACG
TCCTTTCGCCCGGAATCAGCAACGCCGAGAAGGATCGACTCGAGCAGGAG
TCTTGCGAGTTCCAGGTGGACGAGATCTTCCGGGTCTCTGACGTCGGACC
CGTTGTGGGCGGTCTACTTGTCCAGGGCGTGCTGACCGAGAATATGGCAA
TGAAGATTGGTCCGCTTCCCGATGGTAGCTTTCATCCCGTTACTGTTAAT
ACTATCCACCGAAACAAGGCTCCTTGCCGAGTTGTCCGAGCTGGTCAGAG
CGCTTCGCTGTCTTTCAGTATGGATCAGGATGTGCCCACGCTACGAAGTG
GCATGGTTCTTTTGGGTGATATTGGAAATAGTCTGGATGAGCCCTACGGG
ACCTTCTTCTTCCAAGCCAAGGTGTCCGTGCTGTTCCACGCCACGGCCAT
CTATGTCGGCTTCCAAACCACAGTCCACATAGGCAGCATTCGCCAGACGG
CCGTCATTCGGGGCATTATGGGCGGCGAGCGACTGGGCACAAACGATTGT
GCTTCGGTGATGTTCGAGTTCGTCGGCCACCCGGAGTACGTGCGTCCTGG
AATGCGCATCCTGTTCCGCGAGGGCACCAGCAAAGGAATCGGAGTTGTCA
CGCAGGTGTTTCCGGTCAACAAGACAGGCATAAAGTAGAGAAGCGGGCCA
GATGGATAGTTCCAATGACATATCTATATATCTCAAACAAAGATGACATG
TACATATACTTAATTAGCAATTAGAGGGAGGCGTTAAATCTTAGGCAGAT
CTTCTGTACACTTAGTTTCGGGTTCTGTGATTTTTCGTTTAAGCTCGGCT
CACAATCGGATGTTGTGAGTAATCCTTCTCAATTAACCTTATTTCATTAA
AATCCACCCCAAAATGCAAAAAAAAAAAAAAAAAA

SD03629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2017-RA 2447 CG2017-RA 120..2378 10..2268 11295 100 Plus
CG2017.b 2744 CG2017.b 667..2720 215..2268 10270 100 Plus
CG2017.a 2593 CG2017.a 516..2569 215..2268 10270 100 Plus
CG2017.b 2744 CG2017.b 39..243 10..214 1025 100 Plus
CG2017.a 2593 CG2017.a 1..92 123..214 460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1684288..1685167 1766..887 4400 100 Minus
chr3R 27901430 chr3R 1685377..1686050 888..215 3370 100 Minus
chr3R 27901430 chr3R 1683729..1684230 2267..1766 2510 100 Minus
chr3R 27901430 chr3R 1687816..1688020 214..10 1025 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5858642..5859521 1766..887 4400 100 Minus
3R 32079331 3R 5859731..5860404 888..215 3370 100 Minus
3R 32079331 3R 5858082..5858584 2268..1766 2515 100 Minus
3R 32079331 3R 5862170..5862374 214..10 1025 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5599473..5600352 1766..887 4400 100 Minus
3R 31820162 3R 5600562..5601235 888..215 3370 100 Minus
3R 31820162 3R 5598913..5599415 2268..1766 2515 100 Minus
3R 31820162 3R 5603001..5603205 214..10 1025 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:12:46 has no hits.

SD03629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:13:30 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1683729..1684230 1766..2267 100 <- Minus
chr3R 1684289..1685166 888..1765 100 <- Minus
chr3R 1685378..1686050 215..887 94 <- Minus
chr3R 1687816..1688026 4..214 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:16 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 1..1932 107..2038 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:56 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 1..1932 107..2038 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:54 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 1..1932 107..2038 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:08 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 1..1932 107..2038 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:22 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 1..1932 107..2038 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:22 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 32..2295 4..2267 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:56 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 32..2295 4..2267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:54 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 26..2289 4..2267 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:08 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 32..2295 4..2267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:22 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG2017-RA 26..2289 4..2267 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:30 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5858083..5858584 1766..2267 100 <- Minus
3R 5858643..5859520 888..1765 100 <- Minus
3R 5859732..5860404 215..887 100 <- Minus
3R 5862170..5862380 4..214 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:30 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5858083..5858584 1766..2267 100 <- Minus
3R 5858643..5859520 888..1765 100 <- Minus
3R 5859732..5860404 215..887 100 <- Minus
3R 5862170..5862380 4..214 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:30 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5858083..5858584 1766..2267 100 <- Minus
3R 5858643..5859520 888..1765 100 <- Minus
3R 5859732..5860404 215..887 100 <- Minus
3R 5862170..5862380 4..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:54 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1683805..1684306 1766..2267 100 <- Minus
arm_3R 1684365..1685242 888..1765 100 <- Minus
arm_3R 1685454..1686126 215..887 100 <- Minus
arm_3R 1687892..1688102 4..214 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:50 Download gff for SD03629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5603001..5603211 4..214 98   Minus
3R 5598914..5599415 1766..2267 100 <- Minus
3R 5599474..5600351 888..1765 100 <- Minus
3R 5600563..5601235 215..887 100 <- Minus

SD03629.hyp Sequence

Translation from 4 to 2037

> SD03629.hyp
SQNVGSLWFIIIDWIAGATLASPKFEVCCECLTHMSAKLPWQRESNTNSN
THTETIEDPRIVAQYCISNCQHIMESFLSLFDPNQDDGFEEEPELNGNSS
GGGSSSSDYETDANANECSVVSGMPTERGNLIFDFEQGMLPPEPQLGNVE
YKLKLVNPSKQRFEHLVTQMKWRLREGNGEAIYEIGVSDAGYLQGLSDKD
MNASLTTLKQMAHSLGASTSVLRRKTIAARRAVAEVLVRKIPDDQHNIEV
RVAVLGGADAGKSTLLGVLTQDELDNGHGRARLNMFRHMHEIQSGRTSCI
SHETLGFDALGNVVNYKYNEMMTAEEISDRSSKLVTFMDLAGHRRYMRTT
VQALSGYSPHYAMLVVSAGSGCNDTTEEHLAIVRALDMPFFVLVTKTDIT
SPDATVQELCNLLTTIGCRKVPFVVTNTDEAISAGSNQISENIVPIFCVS
NVTGTGLNLVTKFLYVLSPGISNAEKDRLEQESCEFQVDEIFRVSDVGPV
VGGLLVQGVLTENMAMKIGPLPDGSFHPVTVNTIHRNKAPCRVVRAGQSA
SLSFSMDQDVPTLRSGMVLLGDIGNSLDEPYGTFFFQAKVSVLFHATAIY
VGFQTTVHIGSIRQTAVIRGIMGGERLGTNDCASVMFEFVGHPEYVRPGM
RILFREGTSKGIGVVTQVFPVNKTGIK*

SD03629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2017-PA 643 CG2017-PA 1..643 35..677 3317 100 Plus
CG2017-PE 604 CG2017-PE 1..604 74..677 3103 100 Plus
CG2017-PB 604 CG2017-PB 1..604 74..677 3103 100 Plus
CG2017-PC 604 CG2017-PC 1..604 74..677 3103 100 Plus
CG2017-PD 604 CG2017-PD 1..604 74..677 3103 100 Plus

SD03629.pep Sequence

Translation from 106 to 2037

> SD03629.pep
MSAKLPWQRESNTNSNTHTETIEDPRIVAQYCISNCQHIMESFLSLFDPN
QDDGFEEEPELNGNSSGGGSSSSDYETDANANECSVVSGMPTERGNLIFD
FEQGMLPPEPQLGNVEYKLKLVNPSKQRFEHLVTQMKWRLREGNGEAIYE
IGVSDAGYLQGLSDKDMNASLTTLKQMAHSLGASTSVLRRKTIAARRAVA
EVLVRKIPDDQHNIEVRVAVLGGADAGKSTLLGVLTQDELDNGHGRARLN
MFRHMHEIQSGRTSCISHETLGFDALGNVVNYKYNEMMTAEEISDRSSKL
VTFMDLAGHRRYMRTTVQALSGYSPHYAMLVVSAGSGCNDTTEEHLAIVR
ALDMPFFVLVTKTDITSPDATVQELCNLLTTIGCRKVPFVVTNTDEAISA
GSNQISENIVPIFCVSNVTGTGLNLVTKFLYVLSPGISNAEKDRLEQESC
EFQVDEIFRVSDVGPVVGGLLVQGVLTENMAMKIGPLPDGSFHPVTVNTI
HRNKAPCRVVRAGQSASLSFSMDQDVPTLRSGMVLLGDIGNSLDEPYGTF
FFQAKVSVLFHATAIYVGFQTTVHIGSIRQTAVIRGIMGGERLGTNDCAS
VMFEFVGHPEYVRPGMRILFREGTSKGIGVVTQVFPVNKTGIK*

SD03629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18641-PA 606 GF18641-PA 1..606 40..643 3069 94.7 Plus
Dana\GF12779-PA 663 GF12779-PA 16..556 89..636 974 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10776-PA 604 GG10776-PA 1..604 40..643 3166 98.2 Plus
Dere\GG20986-PA 670 GG20986-PA 2..558 73..636 995 39.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18709-PA 604 GH18709-PA 1..604 40..643 2798 88.3 Plus
Dgri\GH21766-PA 671 GH21766-PA 53..559 121..636 996 41 Plus
Dgri\GH25222-PA 615 GH25222-PA 53..503 121..636 800 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2017-PA 643 CG2017-PA 1..643 1..643 3317 100 Plus
CG2017-PE 604 CG2017-PE 1..604 40..643 3103 100 Plus
CG2017-PB 604 CG2017-PB 1..604 40..643 3103 100 Plus
CG2017-PC 604 CG2017-PC 1..604 40..643 3103 100 Plus
CG2017-PD 604 CG2017-PD 1..604 40..643 3103 100 Plus
Dgp-1-PB 669 CG5729-PB 9..556 82..636 976 40.5 Plus
Dgp-1-PA 669 CG5729-PA 9..556 82..636 976 40.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22855-PA 607 GI22855-PA 1..607 40..643 2838 88.6 Plus
Dmoj\GI19313-PA 667 GI19313-PA 6..558 78..636 1024 40.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23496-PA 603 GL23496-PA 1..603 40..643 2958 93.7 Plus
Dper\GL10449-PA 665 GL10449-PA 31..560 87..636 997 39.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15187-PA 603 GA15187-PA 1..603 40..643 2953 93.6 Plus
Dpse\GA19089-PA 665 GA19089-PA 31..560 87..636 1000 39.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10584-PA 604 GM10584-PA 1..604 40..643 3206 99.3 Plus
Dsec\GM19921-PA 669 GM19921-PA 9..556 82..636 994 40.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19575-PA 748 GD19575-PA 142..748 37..643 3243 99.8 Plus
Dsim\GD25410-PA 544 GD25410-PA 9..530 82..627 913 39.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14157-PA 618 GJ14157-PA 1..618 40..643 2808 86.8 Plus
Dvir\GJ22191-PA 659 GJ22191-PA 28..558 87..636 997 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14220-PA 610 GK14220-PA 1..610 40..643 2845 87.6 Plus
Dwil\GK17995-PA 685 GK17995-PA 16..561 89..636 1014 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24131-PA 614 GE24131-PA 8..614 37..643 3217 98.8 Plus
Dyak\GE13929-PA 672 GE13929-PA 31..560 87..636 990 40.2 Plus