Clone SD03655 Report

Search the DGRC for SD03655

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:55
Vector:pOT2
Associated Gene/TranscriptCG12004-RA
Protein status:SD03655.pep: gold
Preliminary Size:2409
Sequenced Size:2280

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12004 2001-01-01 Release 2 assignment
CG12004 2001-07-04 Blastp of sequenced clone
CG12004 2003-01-01 Sim4 clustering to Release 3
CG12004 2008-04-29 Release 5.5 accounting
CG12004 2008-08-15 Release 5.9 accounting
CG12004 2008-12-18 5.12 accounting

Clone Sequence Records

SD03655.complete Sequence

2280 bp (2280 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052085

> SD03655.complete
CACACACCAACACGATTCGTGCGTAGTTTTCATTTATTTTGCTCCGCTTT
CCTTCGCTGTTTTCGCACCCACGATCCGCGAAAAAAACATCCAGGAATCG
TGTTCAAACATTGGCAAACATATTGCGTACCCCCGCGGCCATAAATCAAC
CGCTTTAGGCCATTCTTTTAGCCCCAAACAAGAGCGACGACGTCAGTGGG
CGACGCGACTGGCGTCAGGTGAAAAAAAGAAGGAAAAACGGATTGAGATT
TGAAAATCTATATAAAACGGGTGCAGCGAAATTAAACGGAATTTGCAACT
GTGAAAACGCTCTAAAGCGTGGAGAGTTGCATTTGAAAAAAGCATGAGCA
CAACCGCCGCCAGTCTCATCGAGGCGGCTCTAAATGCCAGTAGTGGAAAC
GCCACGGCTACAACTGCGGGATCGCTTGAGGCTACAGGGAAGCCCAACTA
CGTGGTGCAGGTAAAGAACACTCCGATGAGCACGCCGCTGGACCCGCTGC
TCCACGTGGGCGATGGCATCTTCCTGCAGACAAAGACCGCCCAGGTTCTA
GCTGGGGTGTGCGTCTGGGCCGCCCTCTTCATCACATGTCAACAGATCTA
CCAGCACCTGCGCTGGTACACGAATCCACAGGAGCAGCGCTGGATCGTGC
GCATTTTGTTCATTGTGCCCATCTATGCCACATACTCCTGGATCAGTCTG
CTTTTCTTCAACTCGGATAACGTTTACATCTACTTCTTTACGGTGCGCGA
CTGCTACGAAGCCTTTGTCATCTACAACTTCTTGTCGCTGTGCTATGAGT
ACCTGGGTGGCGAGGGCAATATTATGTCGGAGATTCGCGGCAAGCCCATC
AAGACATCGTGCCTGTATGGCACCTGCTGTCTGAAGGGCAAGACCTACAC
GATTGGCTTCCTGCGCTTCTGCAAGCAGGCCACTCTGCAGTTCTGCCTGG
TCAAGCCGCTGGTGGCCTTCATTATCATCTTTCTGCAGGCATTTGGCCAC
TACCACGATGGCGATTGGAGTGCTGATGGCGGTTACATTTACATCACGAT
TATCTACAACATCTCCGTGTCGCTGGCGTTGTATGGCCTCTATCTGTTCT
ACTTCGCCACGCGTGATCTGCTGACTCCGTTCGAGCCCGTGCTAAAGTTC
TGTACCATTAAGTCCGTCATCTTCTTGTCCTTCTGGCAGGGCGTGGGTCT
GGCCATCCTGGAGAAGGCCAATGTTATCTCGCCCATTGTAGACAGTGCAG
GCACTGTTACCGTGGAACCCGGTACCGTCTCCGCCGGATACCAGAACTTC
TTCATCTGCATCGAAATGCTGTTCGCCGCCATCGCGCTGCGCTATGCATT
CCCCTATCAGGTCTACGCACGCAGCTGCATCAGCGATGGCCACGGACGGT
CTGTCACCATGCAGTCCATTTCCAGCAGTCTTAAGGAAACAATGAATCCC
AAGGATATTATGACAGATGCTATACACAACTTCCATCCGCAGTACCAGCA
GTACACGCAGTACAGCTCAGAAGTAACCTCGGCTCAGCGTTACGAAAAGC
TCTAAATCAATATCAAAAGCAAAACTCTAGCGATGCTCGCTACTAAACAC
TAATTGCAATCACAATTCCACATTTCCGAGCGGGACGCGATCCGAAAGCG
AAGCAAACAAGTGTACTTATAGCCCAAGCGCCCTAGCCCTAGCTTAATGC
CCCAAAGTATCCCCCGAAACCAAGCTCAGAGAGGAAGATACGTACTAGGC
CTAGTTACTTACTTACTCACTCCACAAAACGCTGAAAGCTGAACAGAAAT
TAACTTAGCCAGTCCATTGAGTTCAGGGCTTTTCGAGTTGCCTCTGCGTC
TGTGTTTCTGTATTTCCTACGTTTACACTCTACACCTAAACTTAAGCGTT
TTTTAAAACAACTTATTTAGACGTTAGCTATGTACGAAACGAACTATAAT
ATTGTACAATATTATGTATTTGTAAACAAAGATTTTATTATACTGTATGC
AACAATGGCAGTCGCTGAACAGGATTCCCCATTCAAGCGATCTTCAAGCT
AGTTTCCCCTCAGCATTTATTTACGTGTTTCCGTTTCGCTCAAAGATACC
AAAAACGAAGTTTTTCCTTCTTATATTTTGATTTCCCCTCTTGACCACCC
TTTTGTGATAAGCTCTCGTCGTGCTTCTATTTACTTCTGTTTGTAAATGT
TTAAACCAATTGTATAAAATATCTAAAATACTTAGCAATAAATGTACGAT
AAGATTGACAAAAAAAAAAAAAAAAAAAAA

SD03655.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004.e 3915 CG12004.e 59..2319 1..2261 11095 99.3 Plus
CG12004-RA 2388 CG12004-RA 59..2319 1..2261 11095 99.3 Plus
CG12004.b 2448 CG12004.b 704..2372 593..2261 8225 99.5 Plus
CG12004.b 2448 CG12004.b 59..653 1..595 2885 98.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1573509..1574250 1518..2259 3620 99.2 Plus
chr3L 24539361 chr3L 1572480..1572828 1014..1362 1700 99.1 Plus
chr3L 24539361 chr3L 1568721..1569062 1..342 1620 98.2 Plus
chr3L 24539361 chr3L 1572040..1572300 760..1020 1305 100 Plus
chr3L 24539361 chr3L 1571503..1571757 341..595 1275 100 Plus
chr3L 24539361 chr3L 1571808..1571976 593..761 830 99.4 Plus
chr3L 24539361 chr3L 1573196..1573282 1434..1520 435 100 Plus
chr3L 24539361 chr3L 1573062..1573139 1359..1436 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1573991..1574734 1518..2261 3600 98.9 Plus
3L 28110227 3L 1572962..1573310 1014..1362 1730 99.7 Plus
3L 28110227 3L 1569200..1569541 1..342 1620 98.2 Plus
3L 28110227 3L 1572522..1572782 760..1020 1305 100 Plus
3L 28110227 3L 1571984..1572238 341..595 1275 100 Plus
3L 28110227 3L 1572289..1572457 593..761 845 100 Plus
3L 28110227 3L 1573678..1573764 1434..1520 435 100 Plus
3L 28110227 3L 1573544..1573621 1359..1436 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1573991..1574734 1518..2261 3600 98.9 Plus
3L 28103327 3L 1572962..1573310 1014..1362 1730 99.7 Plus
3L 28103327 3L 1569200..1569541 1..342 1620 98.2 Plus
3L 28103327 3L 1572522..1572782 760..1020 1305 100 Plus
3L 28103327 3L 1571984..1572238 341..595 1275 100 Plus
3L 28103327 3L 1572289..1572457 593..761 845 100 Plus
3L 28103327 3L 1573678..1573764 1434..1520 435 100 Plus
3L 28103327 3L 1573544..1573621 1359..1436 390 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:51:12 has no hits.

SD03655.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1568721..1569062 1..342 98 -> Plus
chr3L 1571505..1571757 343..595 100 -> Plus
chr3L 1571811..1571976 596..761 99 -> Plus
chr3L 1572042..1572300 762..1020 100 -> Plus
chr3L 1572487..1572826 1021..1360 99 -> Plus
chr3L 1573064..1573138 1361..1435 100 -> Plus
chr3L 1573198..1573282 1436..1520 100 -> Plus
chr3L 1573512..1574250 1521..2259 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:18 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 1..1212 344..1555 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 1..1212 344..1555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:25:49 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 1..1212 344..1555 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:10 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 1..1212 344..1555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:27 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 1..1212 344..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:24 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:25:49 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 20..2278 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:10 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:27 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 20..2278 1..2259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569200..1569541 1..342 98 -> Plus
3L 1571986..1572238 343..595 100 -> Plus
3L 1572292..1572457 596..761 100 -> Plus
3L 1572524..1572782 762..1020 100 -> Plus
3L 1572969..1573308 1021..1360 100 -> Plus
3L 1573546..1573620 1361..1435 100 -> Plus
3L 1573680..1573764 1436..1520 100 -> Plus
3L 1573994..1574732 1521..2259 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569200..1569541 1..342 98 -> Plus
3L 1571986..1572238 343..595 100 -> Plus
3L 1572292..1572457 596..761 100 -> Plus
3L 1572524..1572782 762..1020 100 -> Plus
3L 1572969..1573308 1021..1360 100 -> Plus
3L 1573546..1573620 1361..1435 100 -> Plus
3L 1573680..1573764 1436..1520 100 -> Plus
3L 1573994..1574732 1521..2259 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:57 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569200..1569541 1..342 98 -> Plus
3L 1571986..1572238 343..595 100 -> Plus
3L 1572292..1572457 596..761 100 -> Plus
3L 1572524..1572782 762..1020 100 -> Plus
3L 1572969..1573308 1021..1360 100 -> Plus
3L 1573546..1573620 1361..1435 100 -> Plus
3L 1573680..1573764 1436..1520 100 -> Plus
3L 1573994..1574732 1521..2259 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:25:49 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1569200..1569541 1..342 98 -> Plus
arm_3L 1571986..1572238 343..595 100 -> Plus
arm_3L 1572292..1572457 596..761 100 -> Plus
arm_3L 1572524..1572782 762..1020 100 -> Plus
arm_3L 1572969..1573308 1021..1360 100 -> Plus
arm_3L 1573546..1573620 1361..1435 100 -> Plus
arm_3L 1573680..1573764 1436..1520 100 -> Plus
arm_3L 1573994..1574732 1521..2259 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:52 Download gff for SD03655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569200..1569541 1..342 98 -> Plus
3L 1571986..1572238 343..595 100 -> Plus
3L 1572292..1572457 596..761 100 -> Plus
3L 1572524..1572782 762..1020 100 -> Plus
3L 1572969..1573308 1021..1360 100 -> Plus
3L 1573546..1573620 1361..1435 100 -> Plus
3L 1573680..1573764 1436..1520 100 -> Plus
3L 1573994..1574732 1521..2259 98   Plus

SD03655.pep Sequence

Translation from 343 to 1554

> SD03655.pep
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEVTSAQRY
EKL*

SD03655.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10420-PA 406 GF10420-PA 1..406 1..403 1948 94.1 Plus
Dana\GF14144-PA 563 GF14144-PA 33..318 47..341 455 35.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14801-PA 403 GG14801-PA 1..403 1..403 2137 99.3 Plus
Dere\GG23987-PA 493 GG23987-PA 33..318 47..341 453 35.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14506-PA 407 GH14506-PA 1..407 1..403 1869 91.9 Plus
Dgri\GH10663-PA 535 GH10663-PA 34..317 48..341 468 37.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PB 403 CG12004-PB 1..403 1..403 2123 100 Plus
CG12004-PA 403 CG12004-PA 1..403 1..403 2123 100 Plus
CG12004-PD 486 CG12004-PD 1..392 1..392 2070 100 Plus
CG12004-PC 486 CG12004-PC 1..392 1..392 2070 100 Plus
CG5850-PE 468 CG5850-PE 34..318 48..341 449 35.7 Plus
CG5850-PF 469 CG5850-PF 34..318 48..341 449 35.7 Plus
CG5850-PC 490 CG5850-PC 34..318 48..341 449 35.7 Plus
CG5850-PD 491 CG5850-PD 34..318 48..341 449 35.7 Plus
CG5850-PA 491 CG5850-PA 34..318 48..341 449 35.7 Plus
CG5850-PG 608 CG5850-PG 34..318 48..341 449 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13282-PA 410 GI13282-PA 1..410 1..403 1834 89.8 Plus
Dmoj\GI10963-PA 371 GI10963-PA 4..155 187..341 245 37.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17141-PA 408 GL17141-PA 1..408 1..403 1895 93.6 Plus
Dper\GL19192-PA 573 GL19192-PA 33..318 47..341 445 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11327-PA 408 GA11327-PA 1..408 1..403 1895 93.6 Plus
Dpse\GA19178-PA 553 GA19178-PA 33..318 47..341 445 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14424-PA 403 GM14424-PA 1..403 1..403 2154 100 Plus
Dsec\GM12071-PA 491 GM12071-PA 33..318 47..341 451 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13627-PA 403 GD13627-PA 1..403 1..403 2154 100 Plus
Dsim\GD22317-PA 534 GD22317-PA 33..324 47..341 421 34.2 Plus
Dsim\GD15093-PA 78 GD15093-PA 1..68 325..392 365 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12049-PA 411 GJ12049-PA 1..411 1..403 1858 90.6 Plus
Dvir\GJ18301-PA 493 GJ18301-PA 33..317 47..341 453 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12568-PA 406 GK12568-PA 1..406 1..403 1914 91.4 Plus
Dwil\GK14536-PA 575 GK14536-PA 33..318 47..341 461 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21163-PA 403 GE21163-PA 1..403 1..403 2154 100 Plus
Dyak\GE10093-PA 491 GE10093-PA 33..318 47..341 453 35.6 Plus

SD03655.hyp Sequence

Translation from 343 to 1554

> SD03655.hyp
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEVTSAQRY
EKL*

SD03655.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PB 403 CG12004-PB 1..403 1..403 2123 100 Plus
CG12004-PA 403 CG12004-PA 1..403 1..403 2123 100 Plus
CG12004-PD 486 CG12004-PD 1..392 1..392 2070 100 Plus
CG12004-PC 486 CG12004-PC 1..392 1..392 2070 100 Plus
CG5850-PE 468 CG5850-PE 34..318 48..341 449 35.7 Plus