Clone SD03863 Report

Search the DGRC for SD03863

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:38
Well:63
Vector:pOT2
Associated Gene/TranscriptCG5706-RA
Protein status:SD03863.pep: gold
Preliminary Size:1993
Sequenced Size:1964

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5706 2001-01-01 Release 2 assignment
CG5706 2001-07-04 Blastp of sequenced clone
CG5706 2003-01-01 Sim4 clustering to Release 3
CG5706 2008-04-29 Release 5.5 accounting
CG5706 2008-08-15 Release 5.9 accounting
CG5706 2008-12-18 5.12 accounting

Clone Sequence Records

SD03863.complete Sequence

1964 bp (1964 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052086

> SD03863.complete
CATAAATTGGCAACACTGGCACCGGTCTGAAATAAGCCAATTTGTGTTTA
AGCCCATTTATCTGTGTTAAAAGCCAGCTCGGGACTAACAGGTGATTCAT
TCAATATGCCCACCATTGGAGTTAAACGTGATCTGCTCTTCGAGGCGCTC
GGCAAGACGTACACCGATGATGAGTTCCAGGATCTCTGCTTTGCCTTCGG
GTTGGAGCTGGACGAAGTGACCACGGAGAAGCAGATGCTGACCAAGGAAC
AGGGCGATGTGGCAGCGGCGGCCAATGCCAGCGAGGAGATCATATACAGA
ATCGACATACCCGCCAATCGGTATGATCTGCTCTGTTTAGAGGGCTTGGT
CACGGGTCTGCTGGTATTCCAGGGAAAACTCAAGCCCCCTAAGTTCCAGT
TTGTGGAGCTGGCCAAGAGGCAGGTGCTGAAGATTGACCCTTCGACGGCG
CAGATCCGTCCGTACGCTGTGGCCGCTGTGCTCCGGAACGTGACTTTTAC
GCAGGCCTCCTACAACAGCTTCATCGATCTGCAGGACAAGCTGCATCAGA
ACATCTGCCGGAAGCGTACTCTGGTGGCTATCGGAACGCACGATCTGGAC
ACCCTACAGGGACCCTTCAGTTACGAGGCTCTGGCGCCGGATCAAATCAA
GTTCAAACCACTTAACCAAACCAAGGAGATGACTGGCAGCGAGCTCATGG
ACTTCTATTCCACGCATGCGCAGCTGAAGCAATATCTGCCAATCATTCGG
GAATCACCGGTTTATCCAGTGATCTACGATGCCAACCGTGTGGTGCTTTC
ACTGCCGCCCATCATCAACGGTGATCATTCCAAGATTACGCTGAAGACCA
AGAACGTATTCATCGAGTGCACGGCCACGGATAGAACGAAGGCAAAAGTG
GTGCTGGACACCATTGTGTGCCTCTTTTCCGAGCACTGCGCCCAGAAGTT
TACCGTGGAGCCGTGCGATGTGGTGCAACCCGATGGCAGTGTGATCTCCT
ATCCGGAACTGGAGGTGCGCGAGGAGAGGATATCGGTAAAGCGCGCCAAT
GCCTATATTGGCATCGATGAGCCGGCGGAAAAGCTCGCAGATATGCTGAC
GCGCATGTATCTGGAGGCCAAGGTCGATGGCGACTCGCTGGTGGTTAAGA
TCCCGCCCACACGGCACGACGTCATCCACGCGTGCGACATCTACGAGGAC
GTGGCTATTGCCTACGGCTACAACAACATTAAGAAGTCCCTGCCTGCATT
CATGCAAATTGCCAAGCAATTCCCACTTAACAAACTGACCGAACAACTGC
GCGAACAGGTGGCCCAGGCGGGCTTCACCGAGGCGCTGACCTTTACGCTC
TGCTCACGGGATGACATTGGGCGCAAGCTGAACAAGAACATCGACGCCTT
GCCGGCCGTGCACATAGGCAATCCCAAGACCCTGGAGTTCCAAGTAGTGC
GCACGACCCTATTGCCCGGTCTCCTCAAGACGCTGGTGGCCAATCGCAAG
ATGCCGCTACCCCTGAAGCTCTTCGAGATCAGCGACGTGGTGGTTGCGGA
TGAGAGCACGGAAGTTGGTGCTCGCAATGAGCGAAGGGTGTGTGCTGTAA
ACTGCAATAAGACCGCTGGTTTCGAGGTGGTTCACGGCCTGCTAGATCGC
GTGATGCAATTGCTCTCTGTGCCCTGGAAATCGGCCAGCGGGACCAAGGG
CTATTACCTTCAGGCCACCGAGGATCCCAGCTACTTCCCCGGTCGCTGTG
CTAATGTAATGTACGACGGTGTTGTCATCGGCAAGATTGGGGTTTTGCAT
CCCACAGTGCTGCAAGCCTTCGAGCTGACCACGCCTTGTTCGGCGGTGGA
ATTCACCATTGAGCCTTTCGTCTAAAAGATTTGCAAAATGTTCAACATTG
TCTAAAAGTTCACAAATAAATTATCACAAATTAATAAATAAAAAAAAAAA
AAAAAAAAAAAAAA

SD03863.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5706-RA 2098 CG5706-RA 108..2048 1..1941 9705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20074093..20075438 1723..378 6730 100 Minus
chr3R 27901430 chr3R 20073820..20074036 1939..1723 1085 100 Minus
chr3R 27901430 chr3R 20075856..20076018 163..1 815 100 Minus
chr3R 27901430 chr3R 20075505..20075663 377..219 795 100 Minus
chr3R 27901430 chr3R 20075726..20075781 219..164 280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24250733..24252078 1723..378 6730 100 Minus
3R 32079331 3R 24250458..24250676 1941..1723 1095 100 Minus
3R 32079331 3R 24252496..24252658 163..1 815 100 Minus
3R 32079331 3R 24252145..24252303 377..219 795 100 Minus
3R 32079331 3R 24252366..24252421 219..164 280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23991564..23992909 1723..378 6730 100 Minus
3R 31820162 3R 23991289..23991507 1941..1723 1095 100 Minus
3R 31820162 3R 23993327..23993489 163..1 815 100 Minus
3R 31820162 3R 23992976..23993134 377..219 795 100 Minus
3R 31820162 3R 23993197..23993252 219..164 280 100 Minus
Blast to na_te.dros performed 2019-03-15 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1-2 1644 Tc1-2 TC1-2 1644bp 1371..1448 1938..1860 141 69.5 Minus

SD03863.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:37:52 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20073820..20074035 1724..1939 100 <- Minus
chr3R 20074093..20075438 378..1723 100 <- Minus
chr3R 20075505..20075662 220..377 100 <- Minus
chr3R 20075726..20075781 164..219 100 <- Minus
chr3R 20075856..20076018 1..163 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:26 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1770 106..1875 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:59 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1770 106..1875 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:37:29 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1770 106..1875 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:11 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1770 106..1875 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:57 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1770 106..1875 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:26 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:58 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:37:29 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 22..1960 1..1939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:11 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 1..1939 1..1939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:57 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5706-RA 22..1960 1..1939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:52 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24250460..24250675 1724..1939 100 <- Minus
3R 24250733..24252078 378..1723 100 <- Minus
3R 24252145..24252302 220..377 100 <- Minus
3R 24252366..24252421 164..219 100 <- Minus
3R 24252496..24252658 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:52 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24250460..24250675 1724..1939 100 <- Minus
3R 24250733..24252078 378..1723 100 <- Minus
3R 24252145..24252302 220..377 100 <- Minus
3R 24252366..24252421 164..219 100 <- Minus
3R 24252496..24252658 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:52 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24250460..24250675 1724..1939 100 <- Minus
3R 24250733..24252078 378..1723 100 <- Minus
3R 24252145..24252302 220..377 100 <- Minus
3R 24252366..24252421 164..219 100 <- Minus
3R 24252496..24252658 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:37:29 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20076182..20076397 1724..1939 100 <- Minus
arm_3R 20076455..20077800 378..1723 100 <- Minus
arm_3R 20077867..20078024 220..377 100 <- Minus
arm_3R 20078088..20078143 164..219 100 <- Minus
arm_3R 20078218..20078380 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:53 Download gff for SD03863.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23991291..23991506 1724..1939 100 <- Minus
3R 23991564..23992909 378..1723 100 <- Minus
3R 23992976..23993133 220..377 100 <- Minus
3R 23993197..23993252 164..219 100 <- Minus
3R 23993327..23993489 1..163 100   Minus

SD03863.pep Sequence

Translation from 105 to 1874

> SD03863.pep
MPTIGVKRDLLFEALGKTYTDDEFQDLCFAFGLELDEVTTEKQMLTKEQG
DVAAAANASEEIIYRIDIPANRYDLLCLEGLVTGLLVFQGKLKPPKFQFV
ELAKRQVLKIDPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNI
CRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDF
YSTHAQLKQYLPIIRESPVYPVIYDANRVVLSLPPIINGDHSKITLKTKN
VFIECTATDRTKAKVVLDTIVCLFSEHCAQKFTVEPCDVVQPDGSVISYP
ELEVREERISVKRANAYIGIDEPAEKLADMLTRMYLEAKVDGDSLVVKIP
PTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLRE
QVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRT
TLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNC
NKTAGFEVVHGLLDRVMQLLSVPWKSASGTKGYYLQATEDPSYFPGRCAN
VMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPFV*

SD03863.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18885-PA 590 GF18885-PA 1..590 1..589 2948 93.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12360-PA 589 GG12360-PA 1..589 1..589 3076 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18917-PA 588 GH18917-PA 1..588 1..589 2701 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
beta-PheRS-PA 589 CG5706-PA 1..589 1..589 3029 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23417-PA 593 GI23417-PA 1..593 1..589 2824 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24130-PA 589 GL24130-PA 1..589 1..589 2903 90.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19072-PA 589 GA19072-PA 1..589 1..589 2908 90.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23499-PA 589 GM23499-PA 1..589 1..589 3120 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18307-PA 576 GD18307-PA 1..576 1..589 3015 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10622-PA 592 GJ10622-PA 1..592 1..589 2865 89.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11710-PA 589 GK11710-PA 1..589 1..589 2868 89.8 Plus
Dwil\GK15888-PA 610 GK15888-PA 1..42 466..507 178 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10814-PA 589 GE10814-PA 1..589 1..589 3110 98.8 Plus

SD03863.hyp Sequence

Translation from 105 to 1874

> SD03863.hyp
MPTIGVKRDLLFEALGKTYTDDEFQDLCFAFGLELDEVTTEKQMLTKEQG
DVAAAANASEEIIYRIDIPANRYDLLCLEGLVTGLLVFQGKLKPPKFQFV
ELAKRQVLKIDPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNI
CRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDF
YSTHAQLKQYLPIIRESPVYPVIYDANRVVLSLPPIINGDHSKITLKTKN
VFIECTATDRTKAKVVLDTIVCLFSEHCAQKFTVEPCDVVQPDGSVISYP
ELEVREERISVKRANAYIGIDEPAEKLADMLTRMYLEAKVDGDSLVVKIP
PTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLRE
QVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRT
TLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNC
NKTAGFEVVHGLLDRVMQLLSVPWKSASGTKGYYLQATEDPSYFPGRCAN
VMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPFV*

SD03863.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5706-PA 589 CG5706-PA 1..589 1..589 3029 100 Plus