Clone SD03870 Report

Search the DGRC for SD03870

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:38
Well:70
Vector:pOT2
Associated Gene/TranscriptCG10376-RA
Protein status:SD03870.pep: gold
Preliminary Size:2369
Sequenced Size:2487

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10376 2001-01-01 Release 2 assignment
CG10376 2001-07-04 Blastp of sequenced clone
CG10376 2003-01-01 Sim4 clustering to Release 3
CG10376 2008-04-29 Release 5.5 accounting
CG10376 2008-08-15 Release 5.9 accounting
CG10376 2008-12-18 5.12 accounting

Clone Sequence Records

SD03870.complete Sequence

2487 bp (2487 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052087

> SD03870.complete
CAAACAATAACAACATAAAAAAAAAAATCATAAAATGCACAGTGCGCGCG
TGAATCATCGTTGAGCAACAATTAGCATTGATAAGCTCATGATCGCGCGG
CGTCACTAGGAGCGGAAACAGGAACTGAGGCACACGCGACCCACGACAAG
TATGTCGTCAGATGCGATTCCCGCATCGGAATGTGCGCACCTGATGGAAT
TCAAGCGATTTCTGGTCAGCACGGCGGAGAAGGCAGCAGCCGTAAGCGAG
GAGGTGGTCAGCCGGAGTTGTGTAACTCGTACGGCCAATGAGACATACAA
AGTGTCCGGCGAGGAGCGTCATGCCGAATTGGTCTCAGCTATTTGGAAAC
AACTGGAGACTCGAGGATGTCCGGCGCAGTTCCGGATTAAGCTACTCCAT
CGAAGCACACAGCAGCTGGAGCAGGATCTGTGCTTTGCCAAGGAGTGTGA
AGTCACCGTGGAGGGTCCGCCGCAGTACGATCTTCTCAAGCTGCAGAAGT
TCGTGGCCAGTGAGTTTGAGAAGTACATCCTAAAACTCACCGACAACTCG
GAGGTGGATCGCCTCAAGGACTTCGCTGATGAGGCGGCGCCGGAAAACTG
CGAGTGCCACCAGCAGAAAGAACCCCTGCACACATCTGCCGCTGTAAAGA
ACAAACCCCGCAAAATGGAGGATCGCTGTGTTTGCCTGGATCGATTTGGT
GAAATGTACGAGCTGCTGGACAAGACCACCCGTTTTTTTGGCGTCTTTGA
TGGTCACTCTGGCTCTTTATCCGCCACCTATGCAACCAGCCAACTCCCAC
AACTGCTAGCCGATCAGCTTAAAGCAAATCCAGATCCTGCTGCATTCTCC
CCAGACTTTTATCGCAATGCCTTCGAGTCGGCATTTTTGCTGGCCGACGA
GCGTTTCACCCAGAAGAAGATCACCAGCGGCACAACCAGCGTGTGTGCCT
TGATCACAAAGGATCAGCTTTATATCGCTTGGGTGGGCGATTCCAAGGCC
CTTCTCGTGGGCAAGCGGACTCAACTGCAGCTGGTGAAACCGCACAAGCC
AGAGAATCCGGATGAGCGCAAGAGAATAGAAACAGCTGGTGGAACAGTGC
TCCACGCCCAGGGGCAGTGGCGTGTAAATGGCATTCTTAACGTGGCCCGC
TCCATTGGCGACTACAGCCTTGAGGCAGTGATCGCAGAGCCGGACTTCGT
GGATGTGCAGTTAAATGAGGCTCACGACTTTCTCGTACTAGGCACCGATG
GCCTGTGGGATCATGTGCCCGAGTCGCTCATAATCGAAACCGTTTACGAT
TCCCTAGCGGATACCACAATGAAGTTGGACGACATTCCCAAACTGCTGAT
AGAGGCTGCCAAGGAGCGGGATTCCCAGGATAACATAACAGCGGTGGTGG
TTTTGCTCAAACCGCGACATCAGATCGAACATCTTTAAAAGTTTAGGTCC
GAGCAGCAAATTTTTTATATTGTTACCCGCCTTGGGATGGGTTAATTTTG
TACAAATTCAAAGCAACTTAAAAGTCGTAGAAGCGAAAAGTAATCTTGAA
TCAACGCCCTTTGTGTGGTGGGATAACACGAAAAGTCATATCAAATTTTA
CGTATTCGAAAGAGAAAAATGTGCCAAATATTTTTAAACAATTCAAGAAC
GCAATATACACTTGATATTGGCATGCATATTGTGGGAATATAAGTAATAT
AATCCATTTTCTAAAAGATTATTGAACGTACGCAATCGTTTAATGTGATA
CAACGAAAATAAGGTATTACAAGATGATAGAACCCAAGTCCTTGCCTAAT
TAAAAACTAATAATATGCCCAAAGATTACTTTCCGAACCTACATTTGCAA
ATTAATCAACGAGAATTAACCCAAACCGGCCCATTGTTGTTTCGTTTACT
TTACGTTATTGTTGTAATGTAAATAGCTTGGAGCTGTTCGGAGTGCTCCT
ACCTTTATTGTCACATTCTCACGTGCCTACGTGGTCCTGAATATGGATGA
CCCCATCCCGGTCCACTTGTTTGGTTGCTCGAATAAGCTCAATCAAAATA
TTTTGTGGTTGCTCAGCAGTTGAACGAAATTTTAACAAGTTAAGGCAACT
GTTGTTAGCCCAATAGTATATAGAAAAAGTGCACAATTACGCACATAAAT
ATGTTTACATATATTTTAGATTAGCCAGCAAGCATATTTATACACATTGA
AGTTGTTTTCGGCCGCTTAGTGCTTCCTGCTGTACGATAATAAGCCAAGC
CATGTAGCCAGGTACACATATATCGTAGTTAAACGCGTATATATTTACAC
CCGTAACCGTATTTAATGATCCCACACAGATTAAGTACCTTTTTATACAA
ATCCAACGAACCTTTCATGCATTTTATCGAACAACCCAGGACACATTTTT
AACAACACACACGCAAATTGATAAAGATTTTTTATTGGAATAATAAAAGT
AATTCACTGACAAAAAAAAAAAAAAAAAAAAAAAAAA

SD03870.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10376-RA 2514 CG10376-RA 57..2514 1..2460 12245 99.9 Plus
CG10341.a 1820 CG10341.a 1778..1820 2460..2418 215 100 Minus
CG10341-RB 1823 CG10341-RB 1781..1823 2460..2418 215 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18699349..18701807 2460..1 12250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18700605..18703062 2460..1 12235 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18700605..18703062 2460..1 12245 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 22:59:50 has no hits.

SD03870.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:00:54 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18699348..18701807 1..2461 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:27 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 1..1287 152..1438 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:00 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 1..1287 152..1438 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:24 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 1..1287 152..1438 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:12 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 1..1287 152..1438 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:02 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 1..1287 152..1438 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:27 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 57..2514 1..2460 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:00 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 57..2514 1..2460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:24 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 44..2500 1..2459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:12 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 57..2514 1..2460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:02 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
CG10376-RA 44..2500 1..2459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:54 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18700604..18703062 1..2461 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:54 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18700604..18703062 1..2461 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:00:54 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18700604..18703062 1..2461 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:24 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18700604..18703062 1..2461 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:55 Download gff for SD03870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18700604..18703062 1..2461 99   Minus

SD03870.pep Sequence

Translation from 151 to 1437

> SD03870.pep
MSSDAIPASECAHLMEFKRFLVSTAEKAAAVSEEVVSRSCVTRTANETYK
VSGEERHAELVSAIWKQLETRGCPAQFRIKLLHRSTQQLEQDLCFAKECE
VTVEGPPQYDLLKLQKFVASEFEKYILKLTDNSEVDRLKDFADEAAPENC
ECHQQKEPLHTSAAVKNKPRKMEDRCVCLDRFGEMYELLDKTTRFFGVFD
GHSGSLSATYATSQLPQLLADQLKANPDPAAFSPDFYRNAFESAFLLADE
RFTQKKITSGTTSVCALITKDQLYIAWVGDSKALLVGKRTQLQLVKPHKP
ENPDERKRIETAGGTVLHAQGQWRVNGILNVARSIGDYSLEAVIAEPDFV
DVQLNEAHDFLVLGTDGLWDHVPESLIIETVYDSLADTTMKLDDIPKLLI
EAAKERDSQDNITAVVVLLKPRHQIEHL*

SD03870.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14828-PA 432 GF14828-PA 1..429 1..425 1713 77.7 Plus
Dana\GF23353-PA 371 GF23353-PA 55..282 195..417 265 29.2 Plus
Dana\GF20730-PA 366 GF20730-PA 55..278 195..419 248 29.7 Plus
Dana\GF21820-PA 524 GF21820-PA 322..483 259..420 240 36.5 Plus
Dana\GF24378-PA 374 GF24378-PA 49..285 190..419 229 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21691-PA 428 GG21691-PA 1..428 1..428 2159 94.2 Plus
Dere\GG12191-PA 367 GG12191-PA 55..273 195..413 273 29.9 Plus
Dere\GG11671-PA 374 GG11671-PA 55..282 195..417 263 29.2 Plus
Dere\GG10499-PA 524 GG10499-PA 322..483 259..420 240 37.1 Plus
Dere\GG14269-PA 370 GG14269-PA 49..284 190..419 237 30.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10165-PA 445 GH10165-PA 1..439 1..425 1421 63.6 Plus
Dgri\GH18902-PA 371 GH18902-PA 35..282 171..417 285 30.3 Plus
Dgri\GH16235-PA 323 GH16235-PA 49..286 190..419 243 29.5 Plus
Dgri\GH10360-PA 520 GH10360-PA 321..482 259..420 243 36.5 Plus
Dgri\GH15705-PA 335 GH15705-PA 49..285 190..419 233 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10376-PA 428 CG10376-PA 1..428 1..428 2210 100 Plus
CG6036-PA 371 CG6036-PA 56..283 192..419 270 29.2 Plus
alph-PF 332 CG1906-PF 55..282 195..417 252 29.2 Plus
alph-PC 368 CG1906-PC 55..282 195..417 252 29.2 Plus
alph-PD 368 CG1906-PD 55..282 195..417 252 29.2 Plus
alph-PA 368 CG1906-PA 55..282 195..417 252 29.2 Plus
alph-PB 371 CG1906-PB 55..282 195..417 252 29.2 Plus
alph-PE 374 CG1906-PE 55..282 195..417 252 29.2 Plus
CG7115-PC 469 CG7115-PC 267..428 259..420 227 36.5 Plus
CG7115-PD 471 CG7115-PD 269..430 259..420 227 36.5 Plus
CG7115-PE 524 CG7115-PE 322..483 259..420 227 36.5 Plus
CG7115-PB 524 CG7115-PB 322..483 259..420 227 36.5 Plus
CG7115-PA 524 CG7115-PA 322..483 259..420 227 36.5 Plus
Ppm1-PA 352 CG12169-PA 49..295 190..428 213 28.5 Plus
CG17746-PB 371 CG17746-PB 49..284 190..419 209 29.7 Plus
CG17746-PA 371 CG17746-PA 49..284 190..419 209 29.7 Plus
CG10417-PB 662 CG10417-PB 392..569 259..424 196 30.8 Plus
CG10417-PA 662 CG10417-PA 392..569 259..424 196 30.8 Plus
Pp2C1-PB 1427 CG2984-PB 291..569 195..421 162 26.9 Plus
Pp2C1-PA 1427 CG2984-PA 291..569 195..421 162 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22508-PA 444 GI22508-PA 3..441 1..425 1467 66.1 Plus
Dmoj\GI23119-PA 371 GI23119-PA 35..282 171..417 284 30.3 Plus
Dmoj\GI21350-PA 520 GI21350-PA 319..480 259..420 245 37.7 Plus
Dmoj\GI16663-PA 329 GI16663-PA 49..286 190..419 224 27.2 Plus
Dmoj\GI12760-PA 328 GI12760-PA 49..285 190..419 218 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18491-PA 436 GL18491-PA 1..435 1..426 1694 74.8 Plus
Dper\GL13894-PA 370 GL13894-PA 55..281 195..417 275 29.7 Plus
Dper\GL26287-PA 366 GL26287-PA 27..279 163..419 252 27.7 Plus
Dper\GL18645-PA 531 GL18645-PA 316..486 250..420 248 36.4 Plus
Dper\GL22499-PA 319 GL22499-PA 49..295 190..428 241 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10286-PA 436 GA10286-PA 1..435 1..426 1723 75.5 Plus
Dpse\GA15122-PA 370 GA15122-PA 55..281 195..417 275 29.7 Plus
Dpse\GA28805-PA 366 GA28805-PA 27..279 163..419 257 28 Plus
Dpse\GA20114-PA 531 GA20114-PA 316..486 250..420 248 36.4 Plus
Dpse\GA24456-PA 319 GA24456-PA 49..295 190..428 242 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17070-PA 244 GM17070-PA 1..244 185..428 1279 98.4 Plus
Dsec\GM17069-PA 164 GM17069-PA 1..158 1..158 806 96.2 Plus
Dsec\GM13564-PA 319 GM13564-PA 55..282 195..417 260 29.2 Plus
Dsec\GM12795-PA 374 GM12795-PA 55..282 195..417 259 29.2 Plus
Dsec\GM14062-PA 370 GM14062-PA 49..284 190..419 234 30 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21815-PA 428 GD21815-PA 1..428 1..428 2252 98.4 Plus
Dsim\GD21442-PA 374 GD21442-PA 55..282 195..417 259 29.2 Plus
Dsim\GD23491-PA 524 GD23491-PA 322..483 259..420 234 36.5 Plus
Dsim\GD13337-PA 370 GD13337-PA 49..284 190..419 233 30 Plus
Dsim\GD18139-PA 305 GD18139-PA 28..211 237..413 223 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20430-PA 446 GJ20430-PA 13..445 8..427 1446 66.7 Plus
Dvir\GJ10608-PA 371 GJ10608-PA 35..282 171..417 287 31.3 Plus
Dvir\GJ11141-PA 520 GJ11141-PA 321..482 259..420 244 37.1 Plus
Dvir\GJ12915-PA 335 GJ12915-PA 49..286 190..419 229 28 Plus
Dvir\GJ15526-PA 329 GJ15526-PA 49..285 190..419 213 28.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24340-PA 443 GK24340-PA 1..440 6..425 1360 61.7 Plus
Dwil\GK11903-PA 371 GK11903-PA 55..282 195..417 269 29.2 Plus
Dwil\GK14821-PA 546 GK14821-PA 328..489 259..420 247 37.1 Plus
Dwil\GK10512-PA 391 GK10512-PA 49..285 190..419 227 30 Plus
Dwil\GK16640-PA 378 GK16640-PA 59..242 190..370 217 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12714-PA 427 GE12714-PA 1..427 1..428 2118 92.1 Plus
Dyak\GE10634-PA 367 GE10634-PA 55..273 195..413 269 30.6 Plus
Dyak\GE23859-PA 374 GE23859-PA 55..282 195..417 263 29.2 Plus
Dyak\GE14637-PA 524 GE14637-PA 322..483 259..420 239 37.1 Plus
Dyak\GE20697-PA 370 GE20697-PA 49..284 190..419 233 30.4 Plus

SD03870.hyp Sequence

Translation from 151 to 1437

> SD03870.hyp
MSSDAIPASECAHLMEFKRFLVSTAEKAAAVSEEVVSRSCVTRTANETYK
VSGEERHAELVSAIWKQLETRGCPAQFRIKLLHRSTQQLEQDLCFAKECE
VTVEGPPQYDLLKLQKFVASEFEKYILKLTDNSEVDRLKDFADEAAPENC
ECHQQKEPLHTSAAVKNKPRKMEDRCVCLDRFGEMYELLDKTTRFFGVFD
GHSGSLSATYATSQLPQLLADQLKANPDPAAFSPDFYRNAFESAFLLADE
RFTQKKITSGTTSVCALITKDQLYIAWVGDSKALLVGKRTQLQLVKPHKP
ENPDERKRIETAGGTVLHAQGQWRVNGILNVARSIGDYSLEAVIAEPDFV
DVQLNEAHDFLVLGTDGLWDHVPESLIIETVYDSLADTTMKLDDIPKLLI
EAAKERDSQDNITAVVVLLKPRHQIEHL*

SD03870.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10376-PA 428 CG10376-PA 1..428 1..428 2210 100 Plus
CG6036-PA 371 CG6036-PA 56..283 192..419 270 29.2 Plus
alph-PF 332 CG1906-PF 55..282 195..417 252 29.2 Plus
alph-PC 368 CG1906-PC 55..282 195..417 252 29.2 Plus
alph-PD 368 CG1906-PD 55..282 195..417 252 29.2 Plus