Clone SD04017 Report

Search the DGRC for SD04017

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:17
Vector:pOT2
Associated Gene/TranscriptCG1902-RA
Protein status:SD04017.pep: gold
Preliminary Size:1738
Sequenced Size:1730

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1902 2001-01-01 Release 2 assignment
CG1902 2001-10-10 Blastp of sequenced clone
CG1902 2003-01-01 Sim4 clustering to Release 3
CG1902 2008-04-29 Release 5.5 accounting
CG1902 2008-08-15 Release 5.9 accounting
CG30338 2008-08-15 Release 5.9 accounting
CG1902 2008-12-18 5.12 accounting
CG30338 2008-12-18 5.12 accounting

Clone Sequence Records

SD04017.complete Sequence

1730 bp (1730 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061588

> SD04017.complete
CAAACCTCTGCTCTGCCGAAACTGCCCGACCGTAAAAAGTGCATTTAACC
AAACCCAATCAGCGACCAATTGACAAGATTCCCTGTGACCATGGCCAAGA
TACGATCGCTGGAGCCGGAGCTGGCAGAGGTGGCTCGAACGCAGCTCTGC
GAGGATCCGTCCTCGACGGTTGCGAAGATCGAGGCGCTAAGGACCTGGAT
CGACAAACAGATCTACCTGGAGGCGCGGACCGACGATCAGTTCTTGGTGG
CCTTTCTGCGCTTCTGCCGCTGGGACGTAGAGGAGGCCAAGAAGAGGGTA
CTCTTCTACTACACCTACAAATCAAAGGAAAGAGAACTGCTCAAGGGTCG
CCAGGTGGACGATAAGCTGATAGAACTGGCTCGTTCAGGAATATTCGCCA
CATTGCCCAAACCTATTGGCCCTGGTGGCCCCCGCATCCACTACACACGA
ATGGGTCACATTGAACCTTCCAAGCACAGTGTCAGCGACATTTTCCGCTT
CCACGCTTTTCGCGCTGAGATCGAGATCAACACGGACGACAACTGGAACA
TAGCCGGCGTGGTGGAGATCATCGACTTCACCAAGATACCCTACTCTCTG
CTACTGCAGTTCGATCCTGGCATGTTCAAGCGGATGAATGCATTCCTAGA
GCATGGAATTCCAGCGAATTTAGTGGCCACGCACATTGTCAATGCATCCA
GGGAGACGCAGTTTGTCCTTGGACTGGTTCGGAATGTCATGAAGCAAAAG
GAGCTGTTGCACATTCACTCCACCGTCGCGTCTCTGCGAAAGGCAATTGG
ATTGGAGTATTTACCCGTGGAAATGGGCGGCGATAATGGATCTTTGTCTG
ATGCAATGACGCGCTACGAGACCCAGCTGCTAAGCTTTTCCCCGTACTTC
ACGGAAGACGAGCGATATGGCGTGGATGAGAAATTGCGGGAAGCCAGTGA
GAAGGATCAGGAAAGGGGTGCTCCGTTAGTAACCGACGTTCCGAACGACG
GAACCTTCCGAATGATTAACTTCGATTGAGTCAATGATCGGGCAGTTAGT
TGTATATTCTGATGCACATCCTATAGAACACCCATTTAACACACAGCCCG
ATATATACACACTGGAATGTATAGACACTACAGCGCTAAAGCGATCTTTG
GTCATAGCAGAACCTGATATTTTATAAATGAAACCATAAGGGAGGAACAT
CGAAACTAAAAGCAAATTGAACAATATTATAGACGACAAGTGCACACTAA
AACGAGATAAGAAGCAAATGGATCGCCATCAAATGGCACAAAAACCTCAC
AAGTTTGTCGATTTTAATTTATTGCTGTCCTTATCCACGCACATACTTAT
ACACATTCTAACGTCCGGTCGAACGATTCATTCTACCATGATCCCATAAT
GCATTTTCATGATGAAATCTTCAACGTCTTCTACTTGCGTGCTAAGTTGT
TGTTGGCTTTGATTTTATCGCATACTTTTATAAATACGGTACATGAGCAT
ACATATATATTTTGGATAATTTTTCAGTTGGTTAAGTGTCGTTTTTACTA
ATTTTTGATACTAGTTTACACATACATATACATGCATCTCTATATTTATG
GATAATACATACATAGTTAAATGATTATATTTAAATGTGACAATGTACTG
TAGACCCCATGTTGAGTGCGTTAATAAATTAAAGCGAATTTGTTTAAATG
TCGGTATAACTAAAAAAAAAAAAAAAAAAA

SD04017.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RA 1804 CG1902-RA 1..1715 1..1715 8545 99.8 Plus
CG1902.c 1796 CG1902.c 67..1707 75..1715 8175 99.8 Plus
CG1902.a 1818 CG1902.a 90..1729 76..1715 8170 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5492172..5493127 756..1711 4750 99.8 Plus
chr2R 21145070 chr2R 5491747..5492114 389..756 1840 100 Plus
chr2R 21145070 chr2R 5491370..5491683 76..389 1570 100 Plus
chr2R 21145070 chr2R 5481578..5481654 1..77 385 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604669..9605628 756..1715 4770 99.8 Plus
2R 25286936 2R 9604244..9604611 389..756 1840 100 Plus
2R 25286936 2R 9603867..9604180 76..389 1570 100 Plus
2R 25286936 2R 9594083..9594159 1..77 385 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9605868..9606827 756..1715 4770 99.7 Plus
2R 25260384 2R 9605443..9605810 389..756 1840 100 Plus
2R 25260384 2R 9605066..9605379 76..389 1570 100 Plus
2R 25260384 2R 9595282..9595358 1..77 385 100 Plus
Blast to na_te.dros performed 2019-03-16 07:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 1418..1525 1473..1583 134 63.2 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 756..875 1173..1299 114 58.3 Plus

SD04017.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:51:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5481578..5481654 1..77 100 -> Plus
chr2R 5491372..5491683 78..389 100 -> Plus
chr2R 5491748..5492114 390..756 100 -> Plus
chr2R 5492173..5493127 757..1711 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:40:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 1..939 91..1029 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:29 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 1..939 91..1029 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:37 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 1..939 91..1029 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:24 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 1..939 91..1029 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 1..939 91..1029 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 1..1711 1..1711 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:29 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 1..1711 1..1711 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:37 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 39..1749 1..1711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:24 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 1..1711 1..1711 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 39..1749 1..1711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9594083..9594159 1..77 100 -> Plus
2R 9603869..9604180 78..389 100 -> Plus
2R 9604245..9604611 390..756 100 -> Plus
2R 9604670..9605624 757..1711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9594083..9594159 1..77 100 -> Plus
2R 9603869..9604180 78..389 100 -> Plus
2R 9604245..9604611 390..756 100 -> Plus
2R 9604670..9605624 757..1711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:18 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9594083..9594159 1..77 100 -> Plus
2R 9603869..9604180 78..389 100 -> Plus
2R 9604245..9604611 390..756 100 -> Plus
2R 9604670..9605624 757..1711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:37 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5481588..5481664 1..77 100 -> Plus
arm_2R 5491374..5491685 78..389 100 -> Plus
arm_2R 5491750..5492116 390..756 100 -> Plus
arm_2R 5492175..5493129 757..1711 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:29 Download gff for SD04017.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9605068..9605379 78..389 100 -> Plus
2R 9605444..9605810 390..756 100 -> Plus
2R 9605869..9606823 757..1711 99   Plus
2R 9595282..9595358 1..77 100 -> Plus

SD04017.hyp Sequence

Translation from 90 to 1028

> SD04017.hyp
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFD*

SD04017.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PC 312 CG1902-PC 1..312 1..312 1613 100 Plus
CG1902-PA 312 CG1902-PA 1..312 1..312 1613 100 Plus
CG30339-PA 308 CG30339-PA 1..308 1..312 564 38.6 Plus
CG12926-PA 313 CG12926-PA 9..313 4..312 530 37.1 Plus
CG33966-PA 310 CG33966-PA 1..310 1..312 491 34.8 Plus

SD04017.pep Sequence

Translation from 90 to 1028

> SD04017.pep
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFD*

SD04017.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12483-PA 312 GF12483-PA 1..312 1..312 1293 77.6 Plus
Dana\GF12490-PA 308 GF12490-PA 1..308 1..312 579 38.2 Plus
Dana\GF12489-PA 311 GF12489-PA 7..311 4..312 523 35.5 Plus
Dana\GF24441-PA 310 GF24441-PA 1..310 1..312 502 35.8 Plus
Dana\GF25066-PA 311 GF25066-PA 4..311 3..312 447 33.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24093-PA 312 GG24093-PA 1..312 1..312 1528 91 Plus
Dere\GG25272-PA 308 GG25272-PA 1..308 1..312 562 38.9 Plus
Dere\GG25270-PA 313 GG25270-PA 9..313 4..312 547 37.1 Plus
Dere\GG14766-PA 324 GG14766-PA 15..324 1..312 479 33.5 Plus
Dere\GG15223-PA 311 GG15223-PA 4..311 3..312 469 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22935-PA 311 GH22935-PA 1..311 1..312 1263 75.5 Plus
Dgri\GH22857-PA 310 GH22857-PA 6..310 4..312 540 37.1 Plus
Dgri\GH22856-PA 316 GH22856-PA 12..316 4..312 503 33.4 Plus
Dgri\GH15439-PA 324 GH15439-PA 15..324 1..312 481 35.4 Plus
Dgri\GH15199-PA 308 GH15199-PA 4..308 3..312 464 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PC 312 CG1902-PC 1..312 1..312 1613 100 Plus
CG1902-PA 312 CG1902-PA 1..312 1..312 1613 100 Plus
CG30339-PA 308 CG30339-PA 1..308 1..312 564 38.6 Plus
CG12926-PA 313 CG12926-PA 9..313 4..312 530 37.1 Plus
CG33966-PA 310 CG33966-PA 1..310 1..312 491 34.8 Plus
CG33514-PA 311 CG33514-PA 4..311 3..312 463 35 Plus
CG31636-PB 313 CG31636-PB 1..295 1..293 418 32 Plus
CG31636-PA 313 CG31636-PA 1..295 1..293 418 32 Plus
CG10300-PA 311 CG10300-PA 5..286 4..283 412 30.5 Plus
CG10301-PB 306 CG10301-PB 3..306 5..312 394 31.4 Plus
CG33965-PA 317 CG33965-PA 9..317 4..312 359 29.1 Plus
CG2663-PC 308 CG2663-PC 22..308 21..312 279 24.7 Plus
CG2663-PA 308 CG2663-PA 22..308 21..312 279 24.7 Plus
Cralbp-PA 324 CG10546-PA 11..324 7..312 191 23.9 Plus
CG5958-PA 294 CG5958-PA 18..260 7..247 188 24.9 Plus
pinta-PB 273 CG13848-PB 18..268 22..276 180 23.1 Plus
pinta-PA 273 CG13848-PA 18..268 22..276 180 23.1 Plus
CG10026-PD 290 CG10026-PD 7..255 3..247 173 28.9 Plus
CG10026-PC 290 CG10026-PC 7..255 3..247 173 28.9 Plus
CG10026-PA 290 CG10026-PA 7..255 3..247 173 28.9 Plus
CG10026-PB 299 CG10026-PB 16..264 3..247 173 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18421-PA 311 GI18421-PA 1..311 1..312 1288 77.6 Plus
Dmoj\GI21234-PA 308 GI21234-PA 1..308 1..312 597 39.2 Plus
Dmoj\GI21233-PA 313 GI21233-PA 9..313 4..312 507 34.2 Plus
Dmoj\GI16717-PA 308 GI16717-PA 4..308 3..312 489 35.6 Plus
Dmoj\GI22784-PA 306 GI22784-PA 3..306 5..312 403 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17150-PA 312 GL17150-PA 1..312 1..312 1355 80.4 Plus
Dper\GL17331-PA 308 GL17331-PA 1..308 1..312 578 37.3 Plus
Dper\GL17330-PA 311 GL17330-PA 7..311 4..312 532 36 Plus
Dper\GL16163-PA 311 GL16163-PA 5..311 4..312 462 33.2 Plus
Dper\GL13658-PA 311 GL13658-PA 3..286 2..283 417 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15120-PA 312 GA15120-PA 1..312 1..312 1355 80.4 Plus
Dpse\GA15770-PA 308 GA15770-PA 1..308 1..312 585 37.9 Plus
Dpse\GA11913-PA 311 GA11913-PA 7..311 4..312 527 35.7 Plus
Dpse\GA28411-PA 311 GA28411-PA 5..311 4..312 462 33.2 Plus
Dpse\GA10229-PA 311 GA10229-PA 3..286 2..283 423 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21141-PA 312 GM21141-PA 1..312 1..312 1639 97.8 Plus
Dsec\GM20589-PA 308 GM20589-PA 1..308 1..312 589 39.6 Plus
Dsec\GM20588-PA 313 GM20588-PA 9..313 4..312 546 37.1 Plus
Dsec\GM14655-PA 311 GM14655-PA 4..311 3..312 465 35.4 Plus
Dsec\GM14386-PA 290 GM14386-PA 1..290 1..312 453 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10670-PA 312 GD10670-PA 1..312 1..312 1623 97.1 Plus
Dsim\GD10061-PA 308 GD10061-PA 1..308 1..312 575 38.6 Plus
Dsim\GD13840-PA 311 GD13840-PA 4..311 3..312 466 35.4 Plus
Dsim\GD22558-PA 313 GD22558-PA 1..313 1..312 415 30.7 Plus
Dsim\GD21031-PA 306 GD21031-PA 3..306 5..312 400 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21508-PA 311 GJ21508-PA 1..311 1..312 1280 76.9 Plus
Dvir\GJ20839-PA 312 GJ20839-PA 8..312 4..312 546 37 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 1..310 1..312 504 36.4 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 12..316 4..312 477 34.2 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 4..308 3..312 475 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15952-PA 313 GK15952-PA 1..313 1..312 1338 79.6 Plus
Dwil\GK15623-PA 309 GK15623-PA 4..309 3..312 594 38.5 Plus
Dwil\GK15622-PA 313 GK15622-PA 9..313 4..312 518 35.5 Plus
Dwil\GK21135-PA 310 GK21135-PA 1..310 1..312 483 34.6 Plus
Dwil\GK11682-PA 311 GK11682-PA 3..311 2..312 437 33.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19293-PA 312 GE19293-PA 1..312 1..312 1516 90.1 Plus
Dyak\GE22159-PA 308 GE22159-PA 1..308 1..312 570 38.5 Plus
Dyak\GE22148-PA 313 GE22148-PA 9..313 4..312 549 37.4 Plus
Dyak\GE21129-PA 310 GE21129-PA 1..310 1..312 482 33.5 Plus
Dyak\GE21443-PA 311 GE21443-PA 4..311 3..312 471 35.7 Plus