Clone SD04019 Report

Search the DGRC for SD04019

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:19
Vector:pOT2
Associated Gene/TranscriptCG17278-RA
Protein status:SD04019.pep: gold
Preliminary Size:2084
Sequenced Size:1954

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17278 2001-01-01 Release 2 assignment
CG17278 2001-07-04 Blastp of sequenced clone
CG17278 2003-01-01 Sim4 clustering to Release 3
CG17278 2008-04-29 Release 5.5 accounting
CG17278 2008-08-15 Release 5.9 accounting
CG17278 2008-12-18 5.12 accounting

Clone Sequence Records

SD04019.complete Sequence

1954 bp (1954 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060461

> SD04019.complete
AATTGACAGCGGTCAGCGATGAGGAGCAAACTTTTTAGTGACTGCATAAA
TACATGAATAATTCAAACTCAAAAAACCCAGCAGCAACAACAAGCTGGTC
CACGACAACGTGACCTGCCTGTAGAGTTATCGATCAAACGACCGGCCCGA
CCGATCCATCGATCCACCGTTCTACCGATCTACCGATCCGATTTCGGAGC
CCTGCCCCGCTTCATCTGGTGTATTCCGGCCCAACTAACAGCAGCCACAT
CCATCCATCCCAATACCAAATACAAAATACAAAATACAAAATACCCAATA
ACCAATACCCAATACCAGAGGAAAAAACACAATAAAACAATCTGAAATCA
GAAATCAACTACAGGCGAAATGTGCGGAGAAACAAAAAGAAAATTAAAGA
CGACGACACGAGCGTAAATCTTTTTAGCATGAAAAAATTCTATAAAACTA
ACAGGCACTGTGTGGTCGGACATCATTCGTGCGCTACGACGGCAGACGAC
AGCCGCAGATACAGATACAGATACGGATACCGAGATACAGATTCAGATAC
CAAATACCGAGATACAGATAGCCGGTCGGACGGACAGGGCCTGATTGATT
GATTGCCGAACCCGGCCCCATCTCCTGCCCAAAAAATCCAAAATCAAAGC
CCAAAACCAAACCCAAACCAGACTCAAAATCTGTCTGCATCAAAGTATCT
GCAACAGCAACAGCACAGTCATCCCAGCATCCAACCAACATCTAACAGCG
GTCAGCATCCGAGCATCCCAGCATACCAATACCAATCCGATACGAATCCC
AGTCCCAGCGGACATCGTCCAGCCGCCAAGCCATCAATCAGTCAACCGAG
TCACCGCGTCAGTTAGTCAATCGAATCGACTAGCCAGCCCACTCGACTTT
TGCTTTTGCTGGCTGGAGGATATCTTCGGTCGGCGCTTTAGTTTCAGTTC
GCATTTGGACGCGTGCTGTGCGGCCTCGCCGATAGAGAGATTCGGATCGG
AACGGAATCGGAATTCTGAATTCTCAGTACTCAGCTCTCAGTACTCAGTG
TTAAGTTCTCAGTTCTCAGTTCTCAGTACTCAGTACTCAGTTCTTAATTC
TCAATTCTCAGTTACGAGCTCTACATTCTGAATCAGAATTAGAATTAGAA
TCAGAAACGAAAAAGAATCGTGCGCGAATTAATCTACAACGTATCGAGAA
CCAAAACACTGCCGCACACACGTGTCTGAAGTTCAGTGACAAGCCCCAAA
TCAGGCGTCTATATTCCATTGAATATATATAAATCGTGAAATCGTAAAAC
AATTTTAATCAGCTAGAAACCAAGCGCAGGCACGGCATAATTAATTCGTC
TGACCCGCAAAGTTCTTGCAAAGTAAATACGATTGTGCAAAGTGTTGGCC
ATCGCATCGATAAAGTGAAAACTACTCCTACAGCCAATCCGAAAACTAAA
CCAACTAGTAACAACATGAAGCTCTCAGCAGTATTGTTGGCCATCGCGCT
GCTTGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCCAGCACCA
AGTGCGTCATGGAGTGCGACACGCAGGAGTACCGATCCATTTGCGCTGCG
GACGACAAGGGCTCCACCAAGACCTATCGCAATCTGTGCGTGATGAAGAC
GGAAAATTGTCTCCAGAATGCAAACTTTCAAAAGATCAGCGACAAGGAGT
GTCCGTAGAGCTATGGATCCATTGATCTGTAGTCCAGCGGAAATAACTTA
ATCATGGAGGGGAGCGAGTTGACGCGGTTTGGCATTCCGGAGGACTCATC
TTTCCCCCGTGGTATTTGTGTGTGATATTTTTAAGTTGTACTTCAGCGGA
ATACAGAAAACACGCCCCGAACGTAATGCATAATGATAATGTATTCTAAA
ATTATTAATAATAAATATTAAATAAAGTAATCGTAAAAAAAAAAAAAAAA
AAAA

SD04019.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17278-RA 2092 CG17278-RA 84..2019 1..1936 9620 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16846535..16848020 1493..1 7220 99.1 Minus
chr3R 27901430 chr3R 16844904..16845164 1934..1674 1305 100 Minus
chr3R 27901430 chr3R 16845266..16845445 1673..1494 900 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21022671..21024163 1493..1 7435 99.9 Minus
3R 32079331 3R 21021042..21021304 1936..1674 1300 99.6 Minus
3R 32079331 3R 21021405..21021584 1673..1494 885 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20763502..20764994 1493..1 7435 99.8 Minus
3R 31820162 3R 20761873..20762135 1936..1674 1300 99.6 Minus
3R 31820162 3R 20762236..20762415 1673..1494 885 99.4 Minus
Blast to na_te.dros performed 2019-03-16 23:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 4784..4890 332..436 124 62.4 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 1254..1315 552..611 116 67.7 Plus

SD04019.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:52:03 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16844942..16845164 1674..1896 100 <- Minus
chr3R 16845266..16845445 1494..1673 100 <- Minus
chr3R 16846535..16846914 1114..1493 99 == Minus
chr3R 16847001..16847450 571..1020 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:59:35 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..243 1466..1708 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:45 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..243 1466..1708 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:25:54 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..243 1466..1708 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:29 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..243 1466..1708 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:39 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..243 1466..1708 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:49 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..1934 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:45 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..1934 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:25:54 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..1934 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:30 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..1934 1..1934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:39 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
CG17278-RA 1..1934 1..1934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:52:03 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21021044..21021304 1674..1934 99 <- Minus
3R 21021405..21021584 1494..1673 99 <- Minus
3R 21022671..21024163 1..1493 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:52:03 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21021044..21021304 1674..1934 99 <- Minus
3R 21021405..21021584 1494..1673 99 <- Minus
3R 21022671..21024163 1..1493 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:52:03 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21021044..21021304 1674..1934 99 <- Minus
3R 21021405..21021584 1494..1673 99 <- Minus
3R 21022671..21024163 1..1493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:25:54 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16846766..16847026 1674..1934 99 <- Minus
arm_3R 16847127..16847306 1494..1673 99 <- Minus
arm_3R 16848393..16849885 1..1493 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:28 Download gff for SD04019.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20761875..20762135 1674..1934 99 <- Minus
3R 20762236..20762415 1494..1673 99 <- Minus
3R 20763502..20764994 1..1493 99   Minus

SD04019.pep Sequence

Translation from 1465 to 1707

> SD04019.pep
MKLSAVLLAIALLALSLVQCLGLPDPSTKCVMECDTQEYRSICAADDKGS
TKTYRNLCVMKTENCLQNANFQKISDKECP*

SD04019.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18528-PA 80 GF18528-PA 1..80 1..80 294 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15015-PA 80 GG15015-PA 1..80 1..80 409 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23214-PA 80 GH23214-PA 1..80 1..80 309 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17278-PA 80 CG17278-PA 1..80 1..80 419 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10312-PA 80 GI10312-PA 1..80 1..80 302 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12691-PA 80 GL12691-PA 1..80 1..80 340 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14434-PA 80 GA14434-PA 1..80 1..80 340 78.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15117-PA 80 GM15117-PA 1..80 1..80 398 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20020-PA 80 GD20020-PA 1..80 1..80 406 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10165-PA 80 GJ10165-PA 1..80 1..80 310 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14319-PA 81 GK14319-PA 1..81 1..80 321 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25025-PA 80 GE25025-PA 1..80 1..80 410 98.8 Plus

SD04019.hyp Sequence

Translation from 1465 to 1707

> SD04019.hyp
MKLSAVLLAIALLALSLVQCLGLPDPSTKCVMECDTQEYRSICAADDKGS
TKTYRNLCVMKTENCLQNANFQKISDKECP*

SD04019.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17278-PA 80 CG17278-PA 1..80 1..80 419 100 Plus