SD04202.complete Sequence
2006 bp (2006 high quality bases) assembled on 2004-02-02
GenBank Submission: BT011517.1
> SD04202.complete
CTCGAGCGGCAATGTTCTCCGCGTTCTCGAACTCGGACCTCAAATCTTGG
ACTCCCGAAAGCCAAGTGAAATCTATGTATATCTATACAACATCAACTGA
GGCATAGTCGAAATCGGTACTTCGCACAATCTAGCTCGAGTCGGTTCGAG
TTGCTCATCAATTAAAATTCCATATTAGTATGCACGAAAATATATATGTT
TTGAGATCGACGACTACTGGTCAATTCTCCGTTCGGGGTTAAGACCCTAC
CCAAGGCGCGATAATCGCAATCAAAGTTCTCGTCGCCGAGCGGCCACCAC
AGCAACATCCACAGCAACAACATCAGCGATGAGACTTTCCGGCGAGTGGG
GATCTCTATCTCACACCCACTCCCTTGCTTGGAATCACCAGAAAGCTAAA
TGACTGAAGTATTTGACACCCATTATTCAGGGACATGCTTACGTTATGGA
ACCAGGACATCTTGTACGGCTTCGGGTTCGCCAGCACAATGCACTCGAAG
TACGCATCATCGCCCTCCTTGATGTCGTCGGGATTCAGCGAGGAGCCAAT
CTTGAGCGTGGTGGTCGGCTGGTCTGTGGACACATGGGAGAAACGATTTT
TTTGCAATTAGACTCCACCCGCTCTTAGAATTTGCCGCATCTTTTGCTTA
CAATGGACAATGAGTCGCCATTTGTCCTCGATGGCGCTGCCGTCGATGAA
TTGATTTTCTGCCCGACATGTTAAATATTTGCCATCGTCCTCGCGTCCGG
GCGTAAACGTCAGTATACTTAGAGATTGATTATCGGGTTCATTAAACTAA
AAAAGAAACGCAAACAGAGTCCATTAGGAAATGAATAATGAAACGGAAGC
GGACCGAAAGTAACCGAACGGAACGCAACGGAACGGAAAGTGAGAAAAGT
AAAGAAAATCGAGCCAAGGCCACGGCGAAACCCGGCGAAAATGGAAAGGA
AATTTGTGGCAATTATAAGCGACGCACACACTACACAATATTAATTTGTG
TTTAATTAATGAGTTTGGGACTGAGCGCCTTCACGAGTCATTTACGAGTC
GGGGCTTACATTCTTGGTTAGCTTCTTTAGCTGCTTGCTGCCTTTCCACC
AGGTGATGAGCGCCGGCGGCTTCGATCCGGAACTCTTGCACTCCACGTCG
TAGGTGCGATCTGCAGACACGAATCGATCCTTGATGGGTTCGCCATCGCC
CTCGCGGAACCACAGGACCATATAGACGGCGTCGTCCCGCTCCTGCGGCG
AAATATCGCAGGGCAGCATCGCCTGTCGTCCAAGGACACCCTGCACAGTG
GTGAGTGGAACCGGTCGGTCCAGATTCTGCATGAGTTCATCCTGTTCTAC
GTATGTACTGCACACCTGGCTGATCCCAGACAGCATGAGCAGGGGAAGGA
GCAACTGCCTCCAGACATTCCGACTGGGGAATGGATGGGGCGCAGTGGGC
TTTTTCCGACAGCAGGGCTCCCGATCCTCCAGCTCCTCCCTTTCAATCAG
TCGGCAAACTACTTGGTATGTCTCCTCGTGATGCATGATTTTCGCTTTCT
CGTTTACTCAAACTAATCGCTTGCTAAGACTCCCTTCTTTGACCTTTATC
ATAGCCTTTGATAGATTATCGCAGTTTCATCCATGATGCGAAGTTTGTGG
GCGAGCAAGGGGATTCGTTGTCCTTCAGCTGCACAATGCAATAATTCAAG
TCATAAGTTATTTTACTAATAGATGAAAATCACATGCTTATTCATTTTCT
AATAACATTAGTTGATATGAATAAATTTAGTGGCTTGAGTACATATATCG
CGCACTATTTAGGTTTTCATATTAATCATTATTATTTATTTTTTTTTTGC
TAGCAATAAAAAAATTTTACTTTAACAATTATTTAAAAAATTCCAAGCTG
TCACTAATGAATGTAATAAAGTTAGAAAACCAATAAAATGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
SD04202.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14372-RB | 3416 | CG14372-RB | 1..588 | 1770..1183 | 2925 | 99.8 | Minus |
CG14372.d | 4037 | CG14372.d | 1..588 | 1770..1183 | 2925 | 99.8 | Minus |
CG14372.g | 4689 | CG14372.g | 1..588 | 1770..1183 | 2925 | 99.8 | Minus |
CG14372-RB | 3416 | CG14372-RB | 1270..1414 | 796..652 | 725 | 100 | Minus |
CG14372.d | 4037 | CG14372.d | 1270..1414 | 796..652 | 725 | 100 | Minus |
CG14372.g | 4689 | CG14372.g | 1270..1414 | 796..652 | 725 | 100 | Minus |
CG14372-RB | 3416 | CG14372-RB | 1415..1546 | 573..442 | 660 | 100 | Minus |
CG14372.d | 4037 | CG14372.d | 1415..1546 | 573..442 | 660 | 100 | Minus |
CG14372.g | 4689 | CG14372.g | 1415..1546 | 573..442 | 660 | 100 | Minus |
CG14372-RB | 3416 | CG14372-RB | 1146..1269 | 1183..1060 | 605 | 99.1 | Minus |
CG14372.d | 4037 | CG14372.d | 1146..1269 | 1183..1060 | 605 | 99.1 | Minus |
CG14372.g | 4689 | CG14372.g | 1146..1269 | 1183..1060 | 605 | 99.1 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 9283002..9283784 | 1183..401 | 3855 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 9280750..9281507 | 1940..1183 | 3730 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 9290943..9291342 | 400..1 | 1940 | 99 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13457763..13458545 | 1183..401 | 3870 | 99.6 | Minus |
3R | 32079331 | 3R | 13455508..13456268 | 1943..1183 | 3790 | 99.9 | Minus |
3R | 32079331 | 3R | 13465707..13466106 | 400..1 | 1955 | 99.2 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 13198594..13199376 | 1183..401 | 3870 | 99.6 | Minus |
3R | 31820162 | 3R | 13196339..13197099 | 1943..1183 | 3790 | 99.8 | Minus |
3R | 31820162 | 3R | 13206538..13206937 | 400..1 | 1955 | 99.2 | Minus |
Blast to na_te.dros performed 2019-03-15 20:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 3724..3950 | 1903..1687 | 173 | 58.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6761 | 287..327 | 133 | 80.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1252..1325 | 1879..1806 | 127 | 63.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6803 | 289..327 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2415 | 289..327 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6782 | 289..327 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1467..1557 | 238..327 | 119 | 60.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 3769..3927 | 1920..1758 | 119 | 58.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2405 | 289..329 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2349 | 289..327 | 114 | 76.9 | Plus |
SD04202.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:18 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 9280872..9281506 | 1184..1818 | 99 | <- | Minus |
chr3R | 9283002..9283296 | 889..1183 | 98 | == | Minus |
chr3R | 9283349..9283784 | 401..836 | 99 | <- | Minus |
chr3R | 9290943..9291342 | 1..400 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:06 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..177 | 435..611 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:19 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..177 | 435..611 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:12 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..177 | 435..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:05 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..611 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:19 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..611 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:38 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14372-RD | 544..1047 | 1184..1688 | 99 | <- | Minus |
CG14372-RD | 1606..1729 | 1060..1183 | 99 | == | Minus |
CG14372-RD | 1730..1880 | 646..796 | 98 | == | Minus |
CG14372-RD | 1881..2011 | 438..567 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:13 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17025-RA | 1..611 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:54 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14372-RD | 1881..2011 | 438..567 | 98 | | Minus |
CG14372-RD | 544..1047 | 1184..1688 | 99 | <- | Minus |
CG14372-RD | 1606..1729 | 1060..1183 | 99 | == | Minus |
CG14372-RD | 1730..1880 | 646..796 | 98 | == | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13465707..13466106 | 1..400 | 99 | | Minus |
3R | 13455511..13456267 | 1184..1940 | 99 | <- | Minus |
3R | 13457763..13458545 | 401..1183 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13465707..13466106 | 1..400 | 99 | | Minus |
3R | 13455511..13456267 | 1184..1940 | 99 | <- | Minus |
3R | 13457763..13458545 | 401..1183 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13465707..13466106 | 1..400 | 99 | | Minus |
3R | 13455511..13456267 | 1184..1940 | 99 | <- | Minus |
3R | 13457763..13458545 | 401..1183 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:38 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9281233..9281989 | 1184..1940 | 99 | <- | Minus |
arm_3R | 9283485..9284267 | 401..1183 | 99 | <- | Minus |
arm_3R | 9291429..9291828 | 1..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:38 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9281233..9281989 | 1184..1940 | 99 | <- | Minus |
arm_3R | 9283485..9284267 | 401..1183 | 99 | <- | Minus |
arm_3R | 9291429..9291828 | 1..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:01:33 Download gff for
SD04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13196342..13197098 | 1184..1940 | 99 | <- | Minus |
3R | 13198594..13199376 | 401..1183 | 99 | <- | Minus |
3R | 13206538..13206937 | 1..400 | 99 | | Minus |
SD04202.pep Sequence
Translation from 434 to 610
> SD04202.pep
MLTLWNQDILYGFGFASTMHSKYASSPSLMSSGFSEEPILSVVVGWSVDT
WEKRFFCN*
SD04202.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25931-PA | 58 | GM25931-PA | 1..58 | 1..58 | 304 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20495-PA | 58 | GD20495-PA | 1..58 | 1..58 | 304 | 100 | Plus |
SD04202.hyp Sequence
Translation from 1330 to 1530
> SD04202.hyp
MSSSCSTYVLHTWLIPDSMSRGRSNCLQTFGLGNGWGAVGFFRQQGSRSS
SSSLSISRQTTWYVSS*
Sequence SD04202.hyp has no blast hits.