Clone SD04202 Report

Search the DGRC for SD04202

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:42
Well:2
Vector:pOT2
Associated Gene/TranscriptCG17025-RA
Protein status:SD04202.pep: wuzgold
Preliminary Size:611
Sequenced Size:2006

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17025 2003-01-01 Sim4 clustering to Release 3
CG17025 2008-04-29 Release 5.5 accounting
CG17025 2008-08-15 Release 5.9 accounting
CG14372 2008-08-15 Release 5.9 accounting
CG17025 2008-12-18 5.12 accounting
CG14372 2008-12-18 5.12 accounting

Clone Sequence Records

SD04202.complete Sequence

2006 bp (2006 high quality bases) assembled on 2004-02-02

GenBank Submission: BT011517.1

> SD04202.complete
CTCGAGCGGCAATGTTCTCCGCGTTCTCGAACTCGGACCTCAAATCTTGG
ACTCCCGAAAGCCAAGTGAAATCTATGTATATCTATACAACATCAACTGA
GGCATAGTCGAAATCGGTACTTCGCACAATCTAGCTCGAGTCGGTTCGAG
TTGCTCATCAATTAAAATTCCATATTAGTATGCACGAAAATATATATGTT
TTGAGATCGACGACTACTGGTCAATTCTCCGTTCGGGGTTAAGACCCTAC
CCAAGGCGCGATAATCGCAATCAAAGTTCTCGTCGCCGAGCGGCCACCAC
AGCAACATCCACAGCAACAACATCAGCGATGAGACTTTCCGGCGAGTGGG
GATCTCTATCTCACACCCACTCCCTTGCTTGGAATCACCAGAAAGCTAAA
TGACTGAAGTATTTGACACCCATTATTCAGGGACATGCTTACGTTATGGA
ACCAGGACATCTTGTACGGCTTCGGGTTCGCCAGCACAATGCACTCGAAG
TACGCATCATCGCCCTCCTTGATGTCGTCGGGATTCAGCGAGGAGCCAAT
CTTGAGCGTGGTGGTCGGCTGGTCTGTGGACACATGGGAGAAACGATTTT
TTTGCAATTAGACTCCACCCGCTCTTAGAATTTGCCGCATCTTTTGCTTA
CAATGGACAATGAGTCGCCATTTGTCCTCGATGGCGCTGCCGTCGATGAA
TTGATTTTCTGCCCGACATGTTAAATATTTGCCATCGTCCTCGCGTCCGG
GCGTAAACGTCAGTATACTTAGAGATTGATTATCGGGTTCATTAAACTAA
AAAAGAAACGCAAACAGAGTCCATTAGGAAATGAATAATGAAACGGAAGC
GGACCGAAAGTAACCGAACGGAACGCAACGGAACGGAAAGTGAGAAAAGT
AAAGAAAATCGAGCCAAGGCCACGGCGAAACCCGGCGAAAATGGAAAGGA
AATTTGTGGCAATTATAAGCGACGCACACACTACACAATATTAATTTGTG
TTTAATTAATGAGTTTGGGACTGAGCGCCTTCACGAGTCATTTACGAGTC
GGGGCTTACATTCTTGGTTAGCTTCTTTAGCTGCTTGCTGCCTTTCCACC
AGGTGATGAGCGCCGGCGGCTTCGATCCGGAACTCTTGCACTCCACGTCG
TAGGTGCGATCTGCAGACACGAATCGATCCTTGATGGGTTCGCCATCGCC
CTCGCGGAACCACAGGACCATATAGACGGCGTCGTCCCGCTCCTGCGGCG
AAATATCGCAGGGCAGCATCGCCTGTCGTCCAAGGACACCCTGCACAGTG
GTGAGTGGAACCGGTCGGTCCAGATTCTGCATGAGTTCATCCTGTTCTAC
GTATGTACTGCACACCTGGCTGATCCCAGACAGCATGAGCAGGGGAAGGA
GCAACTGCCTCCAGACATTCCGACTGGGGAATGGATGGGGCGCAGTGGGC
TTTTTCCGACAGCAGGGCTCCCGATCCTCCAGCTCCTCCCTTTCAATCAG
TCGGCAAACTACTTGGTATGTCTCCTCGTGATGCATGATTTTCGCTTTCT
CGTTTACTCAAACTAATCGCTTGCTAAGACTCCCTTCTTTGACCTTTATC
ATAGCCTTTGATAGATTATCGCAGTTTCATCCATGATGCGAAGTTTGTGG
GCGAGCAAGGGGATTCGTTGTCCTTCAGCTGCACAATGCAATAATTCAAG
TCATAAGTTATTTTACTAATAGATGAAAATCACATGCTTATTCATTTTCT
AATAACATTAGTTGATATGAATAAATTTAGTGGCTTGAGTACATATATCG
CGCACTATTTAGGTTTTCATATTAATCATTATTATTTATTTTTTTTTTGC
TAGCAATAAAAAAATTTTACTTTAACAATTATTTAAAAAATTCCAAGCTG
TCACTAATGAATGTAATAAAGTTAGAAAACCAATAAAATGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

SD04202.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14372-RB 3416 CG14372-RB 1..588 1770..1183 2925 99.8 Minus
CG14372.d 4037 CG14372.d 1..588 1770..1183 2925 99.8 Minus
CG14372.g 4689 CG14372.g 1..588 1770..1183 2925 99.8 Minus
CG14372-RB 3416 CG14372-RB 1270..1414 796..652 725 100 Minus
CG14372.d 4037 CG14372.d 1270..1414 796..652 725 100 Minus
CG14372.g 4689 CG14372.g 1270..1414 796..652 725 100 Minus
CG14372-RB 3416 CG14372-RB 1415..1546 573..442 660 100 Minus
CG14372.d 4037 CG14372.d 1415..1546 573..442 660 100 Minus
CG14372.g 4689 CG14372.g 1415..1546 573..442 660 100 Minus
CG14372-RB 3416 CG14372-RB 1146..1269 1183..1060 605 99.1 Minus
CG14372.d 4037 CG14372.d 1146..1269 1183..1060 605 99.1 Minus
CG14372.g 4689 CG14372.g 1146..1269 1183..1060 605 99.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9283002..9283784 1183..401 3855 99.5 Minus
chr3R 27901430 chr3R 9280750..9281507 1940..1183 3730 99.5 Minus
chr3R 27901430 chr3R 9290943..9291342 400..1 1940 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:47:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13457763..13458545 1183..401 3870 99.6 Minus
3R 32079331 3R 13455508..13456268 1943..1183 3790 99.9 Minus
3R 32079331 3R 13465707..13466106 400..1 1955 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13198594..13199376 1183..401 3870 99.6 Minus
3R 31820162 3R 13196339..13197099 1943..1183 3790 99.8 Minus
3R 31820162 3R 13206538..13206937 400..1 1955 99.2 Minus
Blast to na_te.dros performed 2019-03-15 20:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 3724..3950 1903..1687 173 58.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6761 287..327 133 80.5 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1252..1325 1879..1806 127 63.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6803 289..327 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2377..2415 289..327 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6782 289..327 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1467..1557 238..327 119 60.4 Plus
roo 9092 roo DM_ROO 9092bp 3769..3927 1920..1758 119 58.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2365..2405 289..329 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2349 289..327 114 76.9 Plus

SD04202.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:18 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9280872..9281506 1184..1818 99 <- Minus
chr3R 9283002..9283296 889..1183 98 == Minus
chr3R 9283349..9283784 401..836 99 <- Minus
chr3R 9290943..9291342 1..400 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:06 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..177 435..611 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:19 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..177 435..611 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:12 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..177 435..611 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:05 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..611 1..611 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:19 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..611 1..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:38 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG14372-RD 544..1047 1184..1688 99 <- Minus
CG14372-RD 1606..1729 1060..1183 99 == Minus
CG14372-RD 1730..1880 646..796 98 == Minus
CG14372-RD 1881..2011 438..567 98   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:13 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG17025-RA 1..611 1..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:54 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
CG14372-RD 1881..2011 438..567 98   Minus
CG14372-RD 544..1047 1184..1688 99 <- Minus
CG14372-RD 1606..1729 1060..1183 99 == Minus
CG14372-RD 1730..1880 646..796 98 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13465707..13466106 1..400 99   Minus
3R 13455511..13456267 1184..1940 99 <- Minus
3R 13457763..13458545 401..1183 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13465707..13466106 1..400 99   Minus
3R 13455511..13456267 1184..1940 99 <- Minus
3R 13457763..13458545 401..1183 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:18 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13465707..13466106 1..400 99   Minus
3R 13455511..13456267 1184..1940 99 <- Minus
3R 13457763..13458545 401..1183 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:38 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9281233..9281989 1184..1940 99 <- Minus
arm_3R 9283485..9284267 401..1183 99 <- Minus
arm_3R 9291429..9291828 1..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:38 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9281233..9281989 1184..1940 99 <- Minus
arm_3R 9283485..9284267 401..1183 99 <- Minus
arm_3R 9291429..9291828 1..400 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:01:33 Download gff for SD04202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13196342..13197098 1184..1940 99 <- Minus
3R 13198594..13199376 401..1183 99 <- Minus
3R 13206538..13206937 1..400 99   Minus

SD04202.pep Sequence

Translation from 434 to 610

> SD04202.pep
MLTLWNQDILYGFGFASTMHSKYASSPSLMSSGFSEEPILSVVVGWSVDT
WEKRFFCN*

SD04202.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25931-PA 58 GM25931-PA 1..58 1..58 304 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20495-PA 58 GD20495-PA 1..58 1..58 304 100 Plus

SD04202.hyp Sequence

Translation from 1330 to 1530

> SD04202.hyp
MSSSCSTYVLHTWLIPDSMSRGRSNCLQTFGLGNGWGAVGFFRQQGSRSS
SSSLSISRQTTWYVSS*
Sequence SD04202.hyp has no blast hits.