BDGP Sequence Production Resources |
Search the DGRC for SD04329
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 43 |
Well: | 29 |
Vector: | pOT2 |
Associated Gene/Transcript | tra2-RA |
Protein status: | SD04329.pep: gold |
Preliminary Size: | 1437 |
Sequenced Size: | 1373 |
Gene | Date | Evidence |
---|---|---|
CG10128 | 2001-01-01 | Release 2 assignment |
CG10128 | 2001-09-19 | Blastp of sequenced clone |
CG10128 | 2003-01-01 | Sim4 clustering to Release 3 |
tra2 | 2008-04-29 | Release 5.5 accounting |
tra2 | 2008-08-15 | Release 5.9 accounting |
tra2 | 2008-12-18 | 5.12 accounting |
1373 bp (1373 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058768
> SD04329.complete TATCGCCACCCCTGTCGAAGCGTGCGTCTTTCTAAACGCAGACAGAATAA ATAAAACCTGACAAAGGCTATCAATTAATTGGTAAACACTGATTGGGTGT GCAATATAGCAGGGAATCAAACCCTCAAAAATGTTTCGATAGGTAAGCAA AAAGCCAATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCCATTGCAGCG CCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCGGGGACAACT TCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTGTGGCAGTCG CCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGCGTTCCTCCT CGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGTTCATCACGC GATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGCAAGCCGCTG CATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACAAGGTACGCG AGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATGGTGATTGAC GCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTTTGAGAAACT CAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAGAAGTGGATG GTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCTCATACCCCA ACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGCTCCACGCTC ATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCTCCGCTTCGC CCTATGACAACTATCGTGATCGCTATGATTACCGCAACGATCGCTACGAC CGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCGCAACAGGAG CTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCATCGCGCTATT AAAGCGCCTGGGGAGGAGGCTACTTCATTAACTCGTGCTCCTAAGTTCGC CCAACTGGATTGCGTCAAACGGGCTGTAAAGGAGCATACGACTGAAATAT TGTGTTTTGGTGAATCCTATCCCATCTAATGCATTTGGTTGGCGAACAGC TCGCAACTAGATTAATTAATTATTCACCCAAAACACCCTTAATCATAATA ATTCGGTTACTATTATTAATGCTGTATAAAAACATAAATTGTAAATATCA AATCAATTACCAACATTACATACAGAGGTCCGCATGGATTGTGATATGTA TTTTAAAGGAACTGCAGCAAACTGATAATGATAACAACATTAAACTAATT TTAATTATAAATGCAATTGTGCAGCAGGTACAAAATAAAGATTAATTTGT ACAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tra2.c | 1823 | tra2.c | 727..1807 | 272..1356 | 5160 | 98.8 | Plus |
tra2.a | 1433 | tra2.a | 618..1417 | 553..1356 | 3785 | 98.6 | Plus |
tra2-RB | 1428 | tra2-RB | 613..1412 | 553..1356 | 3785 | 98.6 | Plus |
tra2-RB | 1428 | tra2-RB | 32..588 | 1..557 | 2710 | 99.1 | Plus |
tra2.a | 1433 | tra2.a | 169..593 | 133..557 | 2080 | 99.2 | Plus |
tra2.c | 1823 | tra2.c | 32..304 | 1..273 | 1335 | 99.2 | Plus |
tra2.a | 1433 | tra2.a | 32..164 | 1..133 | 635 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10489325..10489745 | 1354..930 | 1905 | 98.1 | Minus |
chr2R | 21145070 | chr2R | 10489805..10490183 | 931..553 | 1850 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 10490650..10490806 | 428..272 | 770 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 10491285..10491427 | 275..133 | 715 | 100 | Minus |
chr2R | 21145070 | chr2R | 10491500..10491632 | 133..1 | 635 | 98.5 | Minus |
chr2R | 21145070 | chr2R | 10490464..10490592 | 556..428 | 615 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14602020..14602442 | 1356..930 | 1915 | 98.1 | Minus |
2R | 25286936 | 2R | 14602502..14602880 | 931..553 | 1850 | 99.2 | Minus |
2R | 25286936 | 2R | 14603347..14603503 | 428..272 | 770 | 99.4 | Minus |
2R | 25286936 | 2R | 14603982..14604124 | 275..133 | 715 | 100 | Minus |
2R | 25286936 | 2R | 14604197..14604329 | 133..1 | 635 | 98.5 | Minus |
2R | 25286936 | 2R | 14603161..14603289 | 556..428 | 615 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14603219..14603641 | 1356..930 | 1945 | 98.1 | Minus |
2R | 25260384 | 2R | 14603701..14604079 | 931..553 | 1850 | 99.2 | Minus |
2R | 25260384 | 2R | 14604546..14604702 | 428..272 | 770 | 99.3 | Minus |
2R | 25260384 | 2R | 14605181..14605323 | 275..133 | 715 | 100 | Minus |
2R | 25260384 | 2R | 14605396..14605528 | 133..1 | 635 | 98.4 | Minus |
2R | 25260384 | 2R | 14604360..14604488 | 556..428 | 615 | 98.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10489325..10489745 | 930..1354 | 98 | <- | Minus |
chr2R | 10489807..10490179 | 557..929 | 99 | <- | Minus |
chr2R | 10490464..10490592 | 428..556 | 98 | <- | Minus |
chr2R | 10490651..10490804 | 274..427 | 99 | <- | Minus |
chr2R | 10491287..10491426 | 134..273 | 100 | <- | Minus |
chr2R | 10491500..10491632 | 1..133 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 1..795 | 158..952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 1..795 | 158..952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RG | 1..795 | 158..952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 1..795 | 158..952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RG | 1..795 | 158..952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 24..1378 | 1..1354 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 24..1378 | 1..1354 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RA | 9..1358 | 1..1354 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RF | 24..1378 | 1..1354 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tra2-RA | 9..1358 | 1..1354 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14604197..14604329 | 1..133 | 98 | Minus | |
2R | 14602022..14602442 | 930..1354 | 98 | <- | Minus |
2R | 14602504..14602876 | 557..929 | 99 | <- | Minus |
2R | 14603161..14603289 | 428..556 | 98 | <- | Minus |
2R | 14603348..14603501 | 274..427 | 99 | <- | Minus |
2R | 14603984..14604123 | 134..273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14604197..14604329 | 1..133 | 98 | Minus | |
2R | 14602022..14602442 | 930..1354 | 98 | <- | Minus |
2R | 14602504..14602876 | 557..929 | 99 | <- | Minus |
2R | 14603161..14603289 | 428..556 | 98 | <- | Minus |
2R | 14603348..14603501 | 274..427 | 99 | <- | Minus |
2R | 14603984..14604123 | 134..273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14604197..14604329 | 1..133 | 98 | Minus | |
2R | 14602022..14602442 | 930..1354 | 98 | <- | Minus |
2R | 14602504..14602876 | 557..929 | 99 | <- | Minus |
2R | 14603161..14603289 | 428..556 | 98 | <- | Minus |
2R | 14603348..14603501 | 274..427 | 99 | <- | Minus |
2R | 14603984..14604123 | 134..273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10489527..10489947 | 930..1354 | 98 | <- | Minus |
arm_2R | 10490009..10490381 | 557..929 | 99 | <- | Minus |
arm_2R | 10490666..10490794 | 428..556 | 98 | <- | Minus |
arm_2R | 10490853..10491006 | 274..427 | 99 | <- | Minus |
arm_2R | 10491489..10491628 | 134..273 | 100 | <- | Minus |
arm_2R | 10491702..10491834 | 1..133 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14604360..14604488 | 428..556 | 98 | <- | Minus |
2R | 14604547..14604700 | 274..427 | 99 | <- | Minus |
2R | 14605183..14605322 | 134..273 | 100 | <- | Minus |
2R | 14605396..14605528 | 1..133 | 98 | Minus | |
2R | 14603221..14603641 | 930..1354 | 98 | <- | Minus |
2R | 14603703..14604075 | 557..929 | 99 | <- | Minus |
Translation from 157 to 951
> SD04329.pep MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS RSRSPQLRRTSSRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13528-PA | 261 | GF13528-PA | 11..245 | 14..243 | 611 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22415-PA | 259 | GG22415-PA | 1..259 | 6..264 | 797 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21118-PA | 366 | GH21118-PA | 134..305 | 22..188 | 492 | 63 | Plus |
Dgri\GH21118-PA | 366 | GH21118-PA | 30..139 | 89..198 | 334 | 56.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tra2-PF | 264 | CG10128-PF | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PA | 264 | CG10128-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PG | 264 | CG10128-PG | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PD | 226 | CG10128-PD | 2..226 | 40..264 | 1196 | 100 | Plus |
tra2-PC | 226 | CG10128-PC | 2..226 | 40..264 | 1196 | 100 | Plus |
tra2-PE | 179 | CG10128-PE | 1..179 | 86..264 | 953 | 100 | Plus |
tra2-PB | 136 | CG10128-PB | 1..133 | 1..133 | 699 | 100 | Plus |
snRNP-U1-70K-PC | 448 | CG8749-PC | 102..296 | 97..263 | 162 | 28.6 | Plus |
snRNP-U1-70K-PA | 448 | CG8749-PA | 102..296 | 97..263 | 162 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18722-PA | 248 | GI18722-PA | 32..175 | 46..189 | 541 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10640-PA | 277 | GL10640-PA | 71..235 | 69..235 | 513 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10094-PA | 248 | GA10094-PA | 42..206 | 69..235 | 514 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20203-PA | 265 | GM20203-PA | 1..265 | 1..264 | 985 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25673-PA | 180 | GD25673-PA | 1..180 | 86..264 | 804 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\tra2-PA | 315 | GJ21740-PA | 92..247 | 36..192 | 564 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15735-PA | 277 | GK15735-PA | 68..199 | 65..192 | 536 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12305-PA | 181 | GE12305-PA | 2..181 | 85..264 | 710 | 82.8 | Plus |
Translation from 157 to 951
> SD04329.hyp MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS RSRSPQLRRTSSRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tra2-PF | 264 | CG10128-PF | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PA | 264 | CG10128-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PG | 264 | CG10128-PG | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PD | 226 | CG10128-PD | 2..226 | 40..264 | 1196 | 100 | Plus |
tra2-PC | 226 | CG10128-PC | 2..226 | 40..264 | 1196 | 100 | Plus |