BDGP Sequence Production Resources |
Search the DGRC for SD04409
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 44 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Seipin-RA |
Protein status: | SD04409.pep: gold |
Preliminary Size: | 1584 |
Sequenced Size: | 1716 |
Gene | Date | Evidence |
---|---|---|
CG9904 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9904 | 2002-05-18 | Blastp of sequenced clone |
CG9904 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9904 | 2008-04-29 | Release 5.5 accounting |
CG9904 | 2008-08-15 | Release 5.9 accounting |
CG9904 | 2008-12-18 | 5.12 accounting |
1716 bp (1716 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119182
> SD04409.complete AAAGAGACGACTTCGACGCGGTGGCCACTATCGGGAATTGGAAACTGGAA ATTGGGCACTGGCGATCGGGAAACGATAAGCAATCGCGGATCGGCGCTGA TAGCAGCAGAATACAAAATAACTGGCTTGGCTAATTGCTGTTCCAGTTGC AGCTAGTGCTTGACTGCCACCATGAACATCCTGCTGCGCTTAATCGTCTT CGCCCTGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCG TGAATCTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAG AAGGTGGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTT CGCCGTGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCT ACTACGTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAG TTCAAAACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCA CGTCTCGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACA AGGTGATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTG GGCATGTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAG GGGTCACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCC GCATGATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAA GAGGAGTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGA GCGACAACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGA TCCAGTTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTG CGGTACATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAG CACCAATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACT GGTCCGACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTC ACGAAGTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCG CGACGACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGG ACGTGGGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTG GTCAAGAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAA GCGTCCCACAAAGAAGACCACCGCGGACCATTGAAAAGTGGATGGAGGCG GAGATGATATGGAACGAAAGAGGGACCACCATTAACCACCGAAGGCTAGA CCAACGCCCGTGCGACGCTTGAGCCAAAGACTAAATAGATTTAGGACTAA GTTAGTGAACACAGCCAGCTGAAGTATTCCGGCGGATTAGCTTCAAGCTT CGACTGGTTCTTACTTAAGTGATGGACAAAAGTGTATCATAGTATAGGTA TTAATTATTGATCCAGTTAGAGATTGCCTTGTAGATTGCTGAACTTTGCA TTTTCGATGCAGTTGCTCATTCGTTGTTATCTATGCCCAGTTGGGAACCT TCCCATTGCAAGCCAATTAGCTTAAGAAAAAAGCATTCCATTTGTACATG AAATTTTAGCAACAAACAAAGTCGAATCCAATGAATTTGTAAACGAAAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9904-RA | 2081 | CG9904-RA | 366..1676 | 1..1311 | 6420 | 99.3 | Plus |
CG9904.b | 1979 | CG9904.b | 275..1585 | 1..1311 | 6420 | 99.3 | Plus |
CG9904.a | 1972 | CG9904.a | 275..1578 | 1..1311 | 6290 | 98.7 | Plus |
CG9904-RA | 2081 | CG9904-RA | 1676..2072 | 1301..1697 | 1955 | 99.4 | Plus |
CG9904.b | 1979 | CG9904.b | 1585..1979 | 1301..1695 | 1945 | 99.4 | Plus |
CG9904.a | 1972 | CG9904.a | 1578..1972 | 1301..1695 | 1945 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2515173..2515916 | 943..1695 | 3580 | 98.7 | Plus |
chrX | 22417052 | chrX | 2514620..2515107 | 456..943 | 2425 | 99.8 | Plus |
chrX | 22417052 | chrX | 2513923..2514377 | 1..455 | 2275 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2628923..2629410 | 456..943 | 2395 | 99.3 | Plus |
X | 23527363 | X | 2628237..2628691 | 1..455 | 2200 | 98.9 | Plus |
X | 23527363 | X | 2629844..2630240 | 1301..1697 | 1955 | 99.4 | Plus |
X | 23527363 | X | 2629476..2629844 | 943..1311 | 1830 | 99.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2513923..2514377 | 1..455 | 100 | -> | Plus |
chrX | 2514620..2515107 | 456..943 | 99 | -> | Plus |
chrX | 2515174..2515916 | 944..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 1..1113 | 172..1284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 1..1113 | 172..1284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Seipin-RA | 1..1113 | 172..1284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 1..1113 | 172..1284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Seipin-RA | 1..1113 | 172..1284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 340..2044 | 1..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 340..2044 | 1..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Seipin-RA | 341..2045 | 1..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9904-RA | 340..2044 | 1..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Seipin-RA | 341..2045 | 1..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2620139..2620593 | 1..455 | 98 | -> | Plus |
X | 2620825..2621312 | 456..943 | 99 | -> | Plus |
X | 2621379..2622140 | 944..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2620139..2620593 | 1..455 | 98 | -> | Plus |
X | 2620825..2621312 | 456..943 | 99 | -> | Plus |
X | 2621379..2622140 | 944..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2620139..2620593 | 1..455 | 98 | -> | Plus |
X | 2620825..2621312 | 456..943 | 99 | -> | Plus |
X | 2621379..2622140 | 944..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2514172..2514626 | 1..455 | 98 | -> | Plus |
arm_X | 2514858..2515345 | 456..943 | 99 | -> | Plus |
arm_X | 2515412..2516173 | 944..1695 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2628237..2628691 | 1..455 | 98 | -> | Plus |
X | 2628923..2629410 | 456..943 | 99 | -> | Plus |
X | 2629477..2630238 | 944..1695 | 98 | Plus |
Translation from 171 to 1283
> SD04409.pep MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG KRESPDALRKRPTKKTTADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22234-PA | 396 | GF22234-PA | 1..396 | 1..370 | 1639 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12941-PA | 369 | GG12941-PA | 1..369 | 1..370 | 1889 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12848-PA | 367 | GH12848-PA | 1..367 | 1..355 | 1541 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Seipin-PA | 370 | CG9904-PA | 1..370 | 1..370 | 1919 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14938-PA | 380 | GI14938-PA | 1..362 | 1..365 | 1516 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26746-PA | 141 | GL26746-PA | 1..135 | 1..135 | 689 | 93.3 | Plus |
Dper\GL26747-PA | 303 | GL26747-PA | 1..116 | 145..260 | 619 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22113-PA | 368 | GA22113-PA | 1..366 | 1..366 | 1648 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19233-PA | 346 | GM19233-PA | 1..346 | 1..370 | 1778 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24734-PA | 214 | GD24734-PA | 1..166 | 1..166 | 864 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18967-PA | 364 | GJ18967-PA | 1..362 | 1..365 | 1531 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16325-PA | 377 | GK16325-PA | 1..377 | 1..370 | 1549 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16266-PA | 236 | GE16266-PA | 1..236 | 134..370 | 1174 | 94.9 | Plus |
Translation from 171 to 1283
> SD04409.hyp MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG KRESPDALRKRPTKKTTADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Seipin-PA | 370 | CG9904-PA | 1..370 | 1..370 | 1919 | 100 | Plus |