Clone SD04409 Report

Search the DGRC for SD04409

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:44
Well:9
Vector:pOT2
Associated Gene/TranscriptSeipin-RA
Protein status:SD04409.pep: gold
Preliminary Size:1584
Sequenced Size:1716

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9904 2002-01-01 Sim4 clustering to Release 2
CG9904 2002-05-18 Blastp of sequenced clone
CG9904 2003-01-01 Sim4 clustering to Release 3
CG9904 2008-04-29 Release 5.5 accounting
CG9904 2008-08-15 Release 5.9 accounting
CG9904 2008-12-18 5.12 accounting

Clone Sequence Records

SD04409.complete Sequence

1716 bp (1716 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119182

> SD04409.complete
AAAGAGACGACTTCGACGCGGTGGCCACTATCGGGAATTGGAAACTGGAA
ATTGGGCACTGGCGATCGGGAAACGATAAGCAATCGCGGATCGGCGCTGA
TAGCAGCAGAATACAAAATAACTGGCTTGGCTAATTGCTGTTCCAGTTGC
AGCTAGTGCTTGACTGCCACCATGAACATCCTGCTGCGCTTAATCGTCTT
CGCCCTGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCG
TGAATCTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAG
AAGGTGGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTT
CGCCGTGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCT
ACTACGTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAG
TTCAAAACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCA
CGTCTCGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACA
AGGTGATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTG
GGCATGTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAG
GGGTCACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCC
GCATGATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAA
GAGGAGTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGA
GCGACAACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGA
TCCAGTTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTG
CGGTACATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAG
CACCAATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACT
GGTCCGACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTC
ACGAAGTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCG
CGACGACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGG
ACGTGGGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTG
GTCAAGAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAA
GCGTCCCACAAAGAAGACCACCGCGGACCATTGAAAAGTGGATGGAGGCG
GAGATGATATGGAACGAAAGAGGGACCACCATTAACCACCGAAGGCTAGA
CCAACGCCCGTGCGACGCTTGAGCCAAAGACTAAATAGATTTAGGACTAA
GTTAGTGAACACAGCCAGCTGAAGTATTCCGGCGGATTAGCTTCAAGCTT
CGACTGGTTCTTACTTAAGTGATGGACAAAAGTGTATCATAGTATAGGTA
TTAATTATTGATCCAGTTAGAGATTGCCTTGTAGATTGCTGAACTTTGCA
TTTTCGATGCAGTTGCTCATTCGTTGTTATCTATGCCCAGTTGGGAACCT
TCCCATTGCAAGCCAATTAGCTTAAGAAAAAAGCATTCCATTTGTACATG
AAATTTTAGCAACAAACAAAGTCGAATCCAATGAATTTGTAAACGAAAAA
AAAAAAAAAAAAAAAA

SD04409.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9904-RA 2081 CG9904-RA 366..1676 1..1311 6420 99.3 Plus
CG9904.b 1979 CG9904.b 275..1585 1..1311 6420 99.3 Plus
CG9904.a 1972 CG9904.a 275..1578 1..1311 6290 98.7 Plus
CG9904-RA 2081 CG9904-RA 1676..2072 1301..1697 1955 99.4 Plus
CG9904.b 1979 CG9904.b 1585..1979 1301..1695 1945 99.4 Plus
CG9904.a 1972 CG9904.a 1578..1972 1301..1695 1945 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2515173..2515916 943..1695 3580 98.7 Plus
chrX 22417052 chrX 2514620..2515107 456..943 2425 99.8 Plus
chrX 22417052 chrX 2513923..2514377 1..455 2275 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2621378..2622142 943..1697 3595 98.3 Plus
X 23542271 X 2620825..2621312 456..943 2395 99.4 Plus
X 23542271 X 2620139..2620593 1..455 2200 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2628923..2629410 456..943 2395 99.3 Plus
X 23527363 X 2628237..2628691 1..455 2200 98.9 Plus
X 23527363 X 2629844..2630240 1301..1697 1955 99.4 Plus
X 23527363 X 2629476..2629844 943..1311 1830 99.7 Plus
Blast to na_te.dros performed on 2019-03-15 20:40:24 has no hits.

SD04409.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:23 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2513923..2514377 1..455 100 -> Plus
chrX 2514620..2515107 456..943 99 -> Plus
chrX 2515174..2515916 944..1695 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:03 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 1..1113 172..1284 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:27 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 1..1113 172..1284 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:17:43 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 1..1113 172..1284 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:28 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 1..1113 172..1284 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:01 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 1..1113 172..1284 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:25 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 340..2044 1..1695 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:26 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 340..2044 1..1695 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:43 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 341..2045 1..1695 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:28 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 340..2044 1..1695 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:01 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 341..2045 1..1695 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:23 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
X 2620139..2620593 1..455 98 -> Plus
X 2620825..2621312 456..943 99 -> Plus
X 2621379..2622140 944..1695 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:23 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
X 2620139..2620593 1..455 98 -> Plus
X 2620825..2621312 456..943 99 -> Plus
X 2621379..2622140 944..1695 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:23 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
X 2620139..2620593 1..455 98 -> Plus
X 2620825..2621312 456..943 99 -> Plus
X 2621379..2622140 944..1695 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:43 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514172..2514626 1..455 98 -> Plus
arm_X 2514858..2515345 456..943 99 -> Plus
arm_X 2515412..2516173 944..1695 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:51 Download gff for SD04409.complete
Subject Subject Range Query Range Percent Splice Strand
X 2628237..2628691 1..455 98 -> Plus
X 2628923..2629410 456..943 99 -> Plus
X 2629477..2630238 944..1695 98   Plus

SD04409.pep Sequence

Translation from 171 to 1283

> SD04409.pep
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADH*

SD04409.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22234-PA 396 GF22234-PA 1..396 1..370 1639 80.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12941-PA 369 GG12941-PA 1..369 1..370 1889 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12848-PA 367 GH12848-PA 1..367 1..355 1541 78.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-PA 370 CG9904-PA 1..370 1..370 1919 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14938-PA 380 GI14938-PA 1..362 1..365 1516 78.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26746-PA 141 GL26746-PA 1..135 1..135 689 93.3 Plus
Dper\GL26747-PA 303 GL26747-PA 1..116 145..260 619 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22113-PA 368 GA22113-PA 1..366 1..366 1648 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19233-PA 346 GM19233-PA 1..346 1..370 1778 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24734-PA 214 GD24734-PA 1..166 1..166 864 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18967-PA 364 GJ18967-PA 1..362 1..365 1531 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16325-PA 377 GK16325-PA 1..377 1..370 1549 80.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16266-PA 236 GE16266-PA 1..236 134..370 1174 94.9 Plus

SD04409.hyp Sequence

Translation from 171 to 1283

> SD04409.hyp
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADH*

SD04409.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-PA 370 CG9904-PA 1..370 1..370 1919 100 Plus