Clone SD04477 Report

Search the DGRC for SD04477

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:44
Well:77
Vector:pOT2
Associated Gene/Transcriptkay-RB
Protein status:SD04477.pep: gold
Preliminary Size:2772
Sequenced Size:2737

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15509 2001-01-01 Release 2 assignment
CG15509 2002-12-11 Blastp of sequenced clone
kay 2008-04-29 Release 5.5 accounting
kay 2008-08-15 Release 5.9 accounting
kay 2008-12-18 5.12 accounting

Clone Sequence Records

SD04477.complete Sequence

2737 bp (2737 high quality bases) assembled on 2002-12-11

GenBank Submission: AY069805

> SD04477.complete
CCAAACGTTTCGGGAATAGAATGATAGTAGTGATAGTTCGAATCTGAAGT
CGTGCGAATTACGTGAAAAGTTTTGTAGTGTGTGCTAAATGCAAACAGTG
CGACTCTCTCAGCATGAAAATTCAACAAAAACAGAGCGAGAATTCTAGGA
AATATTGAAAACAGACAGCCCAAATAACAAATAATTCGCACGATCGCGCG
CCACTCGCGGAACGCAGATACAGATACAGATACAAATACATTTAGCCTGC
GGTACAGATACTTTATAGTGCCAGTGCTTCGGTGTGCGGAATACAAAGGC
GAATTTCGCCAGAAATCGCTTGAGTCACTTGGCAGACTTTGTGCGGCCAT
ACGAATCAAAAGCGAATCAAATATATTCAAAACACCTTTGGTTATTCAAT
AAAAATCAGTCAAAACGGAAGACCTACTGATCTACGACAAGATGACGCTG
GACAGCTACAACATCTTCAACGATGAGTACTTGTTCAACATGCCGCTGTC
GCCGCTGCCAAAAGTGCTCGGCAACTTTGAGACCGGCCAGAGTGTTCTCA
CACTGACGACGCCCACGTTGACGCCGACCACCACGCGCAACATCGAGGAC
ACACTGGGCCACTTGCTCTCGGACACGCAGACCGATCGTGTGGCTGGTTG
CGCGGGATTCGCAGTGCCAAAGGTGCTACCCAACGCCATTGATGTCCTGG
GCATGGGTATTCCCACCGGTGTTTCGTCGCTCCCACTTCAGCAGACATTC
GATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAGGACTCCAACGCTTCGTA
CAACGATACGCAGATGAACGAGGAGCAGGACACGACCGATACTTCAAGTG
CCCATACGGACAGCACCTCGTACCAAGCTGGCCACATCATGGCGGGCAGC
GTGAACGGCGGCGGTGTCAACAACTTCTCCAATGTCCTGGCCGCCGTGAG
CTCTAGCCGCGGATCGGCGTCGGTGGGCAGCAGCAACGCGAATACCTCAA
ATACGCCGGCTCGTCGTGGCGGCGGCAGACGCCCCAACCGGTCGACGAAC
ATGACCCCGGAGGAGGAGCAGAAGCGGGCCGTGCGCCGGGAGCGGAACAA
ACAGGCGGCGGCCCGTTGCCGCAAGAGGCGCGTGGACCAGACCAACGAGC
TCACCGAGGAGGTGGAGCAGCTGGAGAAGCGGGGCGAGAGCATGCGCAAG
GAGATCGAGGTGCTGACGAACAGCAAGAATCAGCTGGAGTACCTTCTGGC
CACCCACCGGGCCACCTGCCAAAAGATTCGCTCCGACATGCTGAGCGTGG
TCACCTGCAACGGTCTGATTGCCCCGGCCGGACTCCTGAGCGCCGGGAGC
AGCGGCAGCGGCGCGAGCAGCCACCACAACCACAACAGCAACGACAGCAG
CAACGGCACGATCACCGGCATGGACGCCACGCTGAACTCCACCGGGAGGA
GCAATTCACCCTTGGATCTCAAGCCGGCGGCGAACATCGATAGCCTGCTG
ATGCACATCAAGGACGAGCCACTCGATGGCGCCATCGACTCAGGATCCAG
CCTGGACCAGGACGGTCCACCGCCCAGCAAGCGCATCACCTTGCCGCCCA
TGTCCACGATGCCGCACGTTCACTTGTCCACGATATTAACACCCACCGGC
GCCTCGTCGGGATCTCTGCAGACGCCGATCACGAGCACGGCGCCCGGCGG
ATTCGGCAGCGCCTTCCCGGTGACCTCCAACGGCAGCAGCATCAACAACA
TCAACAGCATCGGCAACAACATGAACTCTCCCACGCTGAATGCGCATAAC
AAGGTGCCTAAGGAGCGGCCCAACACGTTGGCCTTCCAGCGTCCACTGGG
CCAGATGCACCTCACCATGGCCAACAACAAGGCGGGTGGGCCCACGCAGA
TCCAGGGCGTGCCCATCCAGACGCCCTCGACCGGCACCTTCAACTTTGAC
TCCCTGATGGACGGCGGCACTGGGCTAACGCCCGTCTCCGGACCCCTCGT
CCCGAACAGCTCCTCCACGAACAAGCACCCGCTGGAGCTGCCCACGCCCA
CCGCCGAGCCGTCCAAGCTGGTCAGCTTATAACCGGACCGGATCTGGGAC
GGGGATGGGGGCCGAGTCAGGATTAAGTTAAGTTTTATATAGTTGGCAGG
CAAACAACGGAAGGAAACCGCGAAGCACTTTTCTAGTTGGAGGAGATGTT
TTCATTTTTGTAATATGCTGTAATATGCGTAAACGTGACGAATGTGTTGT
TTCGTTAACTCTAATGTTTTTGTATTATTATCTTTATTATGGTTAATTTA
TGATTTCGCTATGTCTTTTACATACGCCGAGGAGCTATGTACATATGTTA
TGTACTTGTAATTTGTGCAATTTTCAAACCTCTTCATTGCGCGTTGTATA
TTTTCAAAAAATATAAGAACGCGAACGCGAACGCGAACGACCGACGATGC
ATGATGAGAATGATAAGGATAATGATGATAATAGGGCGTGTAGATTTGCA
GGATGCGTTGTGATATTTATTATAAAACGAATACAAAAGATGCGAGGATG
AAACAAAGTAGAAAGCAAACAGGAGCGTCTAATGAAAGGAACTAAGCCGG
TTTTAAAATTGTACATTTAAACGAATCGTAAAGCGTAAATATACTATAAA
ACAAAACAAAGTGAATATATATTCAGCATACAAACTAAATACAATGCCTT
GAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD04477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
kay.h 3615 kay.h 51..2759 1..2709 13260 99.2 Plus
kay-RB 3337 kay-RB 51..2759 1..2709 13260 99.2 Plus
kay.c 2747 kay.c 70..2268 511..2709 10710 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25614354..25616216 845..2707 9150 99.4 Plus
chr3R 27901430 chr3R 25605190..25605705 1..516 2535 99.4 Plus
chr3R 27901430 chr3R 25613959..25614287 516..844 1600 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29791787..29793651 845..2709 9085 99.1 Plus
3R 32079331 3R 29782632..29783147 1..516 2565 99.8 Plus
3R 32079331 3R 29791392..29791720 516..844 1615 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29532618..29534482 845..2709 9085 99.1 Plus
3R 31820162 3R 29523463..29523978 1..516 2565 99.8 Plus
3R 31820162 3R 29532223..29532551 516..844 1615 99.3 Plus
Blast to na_te.dros performed 2019-03-16 20:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2468 1339..1454 193 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2907..3024 1344..1452 164 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1073..1161 1344..1429 159 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1578 1737..1776 146 85 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2409 1728..1776 146 77.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1564 1362..1420 144 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2472..2528 1728..1784 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2430..2473 1728..1771 139 79.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1140 1343..1420 136 68.3 Plus
rover 7318 rover ROVER 7318bp 632..743 57..167 134 58.9 Plus
rover 7318 rover ROVER 7318bp 783..894 57..167 134 58.9 Plus
rover 7318 rover ROVER 7318bp 934..1045 57..167 134 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2869..2974 1339..1439 132 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2582..2662 1331..1408 127 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2848 1366..1453 126 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1493..1551 1719..1776 121 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1589 1348..1403 116 71.2 Plus

SD04477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:58:26 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25605190..25605705 1..516 99 -> Plus
chr3R 25613960..25614287 517..844 99 -> Plus
chr3R 25614354..25614856 845..1347 98 == Plus
chr3R 25614918..25616216 1409..2707 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:18:36 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 1..1641 442..2082 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:43 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 1..1641 442..2082 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:02 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 1..1641 442..2082 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:14 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 1..1641 442..2082 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:40 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 1..1641 442..2082 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:18:35 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 22..2728 1..2707 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:43 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 22..2728 1..2707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:02 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 24..2730 1..2707 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:14 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 22..2728 1..2707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:40 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RB 24..2730 1..2707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:26 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29782632..29783147 1..516 99 -> Plus
3R 29791393..29791720 517..844 99 -> Plus
3R 29791787..29793649 845..2707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:26 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29782632..29783147 1..516 99 -> Plus
3R 29791393..29791720 517..844 99 -> Plus
3R 29791787..29793649 845..2707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:26 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29782632..29783147 1..516 99 -> Plus
3R 29791393..29791720 517..844 99 -> Plus
3R 29791787..29793649 845..2707 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:02 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25608354..25608869 1..516 99 -> Plus
arm_3R 25617115..25617442 517..844 99 -> Plus
arm_3R 25617509..25619371 845..2707 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:05 Download gff for SD04477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29523463..29523978 1..516 99 -> Plus
3R 29532224..29532551 517..844 99 -> Plus
3R 29532618..29534480 845..2707 99   Plus

SD04477.pep Sequence

Translation from 441 to 2081

> SD04477.pep
MTLDSYNIFNDEYLFNMPLSPLPKVLGNFETGQSVLTLTTPTLTPTTTRN
IEDTLGHLLSDTQTDRVAGCAGFAVPKVLPNAIDVLGMGIPTGVSSLPLQ
QTFDLSLGQGSESEDSNASYNDTQMNEEQDTTDTSSAHTDSTSYQAGHIM
AGSVNGGGVNNFSNVLAAVSSSRGSASVGSSNANTSNTPARRGGGRRPNR
STNMTPEEEQKRAVRRERNKQAAARCRKRRVDQTNELTEEVEQLEKRGES
MRKEIEVLTNSKNQLEYLLATHRATCQKIRSDMLSVVTCNGLIAPAGLLS
AGSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANID
SLLMHIKDEPLDGAIDSGSSLDQDGPPPSKRITLPPMSTMPHVHLSTILT
PTGASSGSLQTPITSTAPGGFGSAFPVTSNGSSINNINSIGNNMNSPTLN
AHNKVPKERPNTLAFQRPLGQMHLTMANNKAGGPTQIQGVPIQTPSTGTF
NFDSLMDGGTGLTPVSGPLVPNSSSTNKHPLELPTPTAEPSKLVSL*

SD04477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23375-PA 529 GF23375-PA 1..529 1..546 1414 63.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11694-PA 549 GG11694-PA 1..549 1..546 2363 87.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14331-PA 796 GH14331-PA 382..796 111..546 1030 56.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
kay-PB 546 CG33956-PB 1..546 1..546 2807 100 Plus
kay-PA 595 CG33956-PA 74..595 25..546 2676 99.8 Plus
kay-PG 646 CG33956-PG 126..646 26..546 2673 100 Plus
kay-PF 755 CG33956-PF 235..755 26..546 2673 100 Plus
kay-PD 722 CG33956-PD 202..722 26..546 2673 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10426-PA 784 GI10426-PA 359..784 110..546 1149 61.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23721-PA 526 GL23721-PA 1..526 1..546 1310 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\kay-PC 558 GA13774-PA 1..558 1..546 1271 59.6 Plus
Dpse\kay-PB 598 GA30111-PB 172..598 103..546 1161 64.8 Plus
Dpse\kay-PD 778 GA30111-PD 351..778 102..546 1161 64.9 Plus
Dpse\kay-PA 738 GA30111-PA 312..738 103..546 1160 65.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12821-PA 549 GM12821-PA 1..549 1..546 2497 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21465-PA 498 GD21465-PA 1..498 1..546 2135 86.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10642-PA 792 GJ10642-PA 337..792 103..546 1191 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11924-PA 620 GK11924-PA 81..620 25..546 971 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23884-PA 552 GE23884-PA 1..552 1..546 2402 91.3 Plus

SD04477.hyp Sequence

Translation from 441 to 2081

> SD04477.hyp
MTLDSYNIFNDEYLFNMPLSPLPKVLGNFETGQSVLTLTTPTLTPTTTRN
IEDTLGHLLSDTQTDRVAGCAGFAVPKVLPNAIDVLGMGIPTGVSSLPLQ
QTFDLSLGQGSESEDSNASYNDTQMNEEQDTTDTSSAHTDSTSYQAGHIM
AGSVNGGGVNNFSNVLAAVSSSRGSASVGSSNANTSNTPARRGGGRRPNR
STNMTPEEEQKRAVRRERNKQAAARCRKRRVDQTNELTEEVEQLEKRGES
MRKEIEVLTNSKNQLEYLLATHRATCQKIRSDMLSVVTCNGLIAPAGLLS
AGSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANID
SLLMHIKDEPLDGAIDSGSSLDQDGPPPSKRITLPPMSTMPHVHLSTILT
PTGASSGSLQTPITSTAPGGFGSAFPVTSNGSSINNINSIGNNMNSPTLN
AHNKVPKERPNTLAFQRPLGQMHLTMANNKAGGPTQIQGVPIQTPSTGTF
NFDSLMDGGTGLTPVSGPLVPNSSSTNKHPLELPTPTAEPSKLVSL*

SD04477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
kay-PB 546 CG33956-PB 1..546 1..546 2807 100 Plus
kay-PA 595 CG33956-PA 74..595 25..546 2676 99.8 Plus
kay-PG 646 CG33956-PG 126..646 26..546 2673 100 Plus
kay-PF 755 CG33956-PF 235..755 26..546 2673 100 Plus
kay-PD 722 CG33956-PD 202..722 26..546 2673 100 Plus