Clone SD04526 Report

Search the DGRC for SD04526

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:26
Vector:pOT2
Associated Gene/TranscriptCG32452-RA
Protein status:SD04526.pep: gold
Preliminary Size:2120
Sequenced Size:2046

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32452 2001-07-04 Blastp of sequenced clone
CG32452 2003-01-01 Sim4 clustering to Release 3
CG32452 2008-04-29 Release 5.5 accounting
CG32452 2008-08-15 Release 5.9 accounting
CG32452 2008-12-18 5.12 accounting

Clone Sequence Records

SD04526.complete Sequence

2046 bp (2046 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052096

> SD04526.complete
CAGTTATCGAATATATTAACACCAATGCTATGCTGATAAATACAATTAAT
TCAAACGTATGGCAAACGTATGAGGACGCTAAGTGCAGAAACAGTAATTT
TGTATTGGTATCAACTCTGACTCCGGCCTCACAAGTGAAAAAAAGCATTG
TCGCAAGGTGTGTATTTCAACCGGCGTCGGCCTGTTGCGTCTATGAAGAA
AAGTCACCAGTTGCCTAAACGAAATATGATTCCTCATGTATAGCCCATGA
GCCACAAGGGCAGCACGCACATAGCCCACAGACGGGATATCGGAGACACC
ACGAAAGCACATGTGCAGGATGGAGAAGTACTTAGCTCGGAAACCAATGA
ACACGATGGATTTCCACAGGAAGCTTATATTAAAACCGAGCCCTTATGCG
AAGATCTGTCGGAAGTCCTGGACGAGCTGGGGGAAATACTGGACGAGGAG
CTGGCCGATATGTTGGATATGAGGCAGAGCAACATTATATATAGGGACCA
GGGCGAGATTATGGATAAGGAGGAGGCCGAGGTGGATGAGGAAGAAGCGG
GCACGCCACCGGCGCCCTCCATCTCACTTACCGACGACGCCTCTTTATTC
ACCAGGAGATCAAGACCATATGCTGACGATTCTCCCCTAAGCTTTAGTGG
ATCTTTATACGAGCCGGGAGGCTCAAGTGGGGAAGACCAGAAAGAACCAG
TTCGTGGCAATAATTTACATGAAATTGCCTTAGTGCGGTTCCGAAACTGT
CCAGAACAGAGCTTAAAACGCTGCAGTATCGACGCTTTCGTCGAACGAAA
GTTCCCCTCGGAGAATAAGATAAATCGAAGAAGCACCCGCAGCACATCCA
ATGAAAAGAGTGCCACACAAAGACGATCGGTTAGTCGCAGTCACATCCCA
AGGTGCAGAGGCAGAAGAAGGAGCCAGTCCAGGAGCCCAACAGAACCAAA
GCAAAGATCGAGTCCGCCCACCCACAAAAGGCGATCAAGTCCATCTAGAG
AACACATTAGGTCTCGGAAGCGATGCTACTCTAGGGACCGAAGAGAGCGG
CGTAGCAGACTACCATCTAGGCGCAAACTTATCTCGAGGTCCCGGAGCCC
AGATCACAGAAGTCGTTCGCGATATCGTTCTCTAGGCAAAGGGTCAAGAC
ATGCGTCGCCCTGTGCTGGGAACCGTCACAGATCCCTCAGATCTCCAAGC
GTTGAACGGAGGCTTGGGTCGCGGAATTCGCCAGTACGCCGTTCTCGGTA
TCGGTCAAGGAGCAACTCTAGGCTTATCAAACATGGGGTAGCACATCGCA
TAGAAAGTAGGGCTTACAGGGGGGATCGTTCGAGGAGCAGGTGCCGGTCA
GCAAGAAAACCCCTCCGAAAGTGTTCTAGAAGCAAATCCAAATCTGTAAG
AATCACACAGCAGGAGCTTTCAAGACGCGCATCCAAGGCGCGATCAAAGA
GTAAACACAGGCCACTAAAGACCGTGGCTTGCCGACGTTCCAGAAGCCGA
TCCAACAGCCCCCATACTCGCCTTCGCAGAGTTTCAAAGAGTAGCTCCCA
GCCCGCACACACCCAACAGCGGAATACCACCTCGCCACCTTTGGCCGCAA
TATCGCCACGCCCCATTTCTCCGATAGTTACACTTCACGATAATCGAACT
AGTCATCCAAAGGAGATGATCCAGTACCTGCTTCCTACCCCAACTGTTCC
TCAAATTTTCTACAGGCAGACGAACTACACCCATACGGAGTACAGTGCGC
ATGCCGGCAACGTTACCGGATTCTTCGGGCAGCCTTTTCCGGTGCTGGAG
CCGTACGACGTGCGCCACCGCTTGTCCACCACGCGTTCACTCTATTACGT
AGGGCCCAACGATCTGCGGCACCATATCCAGGGAATATACTCGCACCAAC
CCGCCTTTAATGCCTACACCGAGTGGCCCACGGGGTTAACTGAGGATAAC
CATCCTAGTGGTTACTACTGAAAGGCTCCCTATGGTTAAGAATAAACATC
ATTACTTGCAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD04526.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32452-RA 2008 CG32452-RA 29..2008 36..2015 9855 99.8 Plus
CG32452-RB 2209 CG32452-RB 171..1944 242..2015 8840 99.8 Plus
CG32452-RB 2209 CG32452-RB 51..172 36..157 610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22706642..22708648 1..2014 9870 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22717739..22719746 1..2015 9875 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22710867..22712846 36..2015 9855 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 20:15:40 has no hits.

SD04526.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:36 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22706642..22708648 1..2014 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:10 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RB 1..1725 247..1971 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:44 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RB 1..1725 247..1971 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 1..1725 247..1971 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:55 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RB 1..1725 247..1971 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 1..1725 247..1971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:04 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 1..2007 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:44 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 1..2007 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 12..2018 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:55 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 1..2007 1..2014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
CG32452-RA 12..2018 1..2014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22717739..22719745 1..2014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22717739..22719745 1..2014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22717739..22719745 1..2014 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:16 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22710839..22712845 1..2014 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:35 Download gff for SD04526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22710839..22712845 1..2014 99   Plus

SD04526.pep Sequence

Translation from 246 to 1970

> SD04526.pep
MSHKGSTHIAHRRDIGDTTKAHVQDGEVLSSETNEHDGFPQEAYIKTEPL
CEDLSEVLDELGEILDEELADMLDMRQSNIIYRDQGEIMDKEEAEVDEEE
AGTPPAPSISLTDDASLFTRRSRPYADDSPLSFSGSLYEPGGSSGEDQKE
PVRGNNLHEIALVRFRNCPEQSLKRCSIDAFVERKFPSENKINRRSTRST
SNEKSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTHKRRSSPS
REHIRSRKRCYSRDRRERRSRLPSRRKLISRSRSPDHRSRSRYRSLGKGS
RHASPCAGNRHRSLRSPSVERRLGSRNSPVRRSRYRSRSNSRLIKHGVAH
RIESRAYRGDRSRSRCRSARKPLRKCSRSKSKSVRITQQELSRRASKARS
KSKHRPLKTVACRRSRSRSNSPHTRLRRVSKSSSQPAHTQQRNTTSPPLA
AISPRPISPIVTLHDNRTSHPKEMIQYLLPTPTVPQIFYRQTNYTHTEYS
AHAGNVTGFFGQPFPVLEPYDVRHRLSTTRSLYYVGPNDLRHHIQGIYSH
QPAFNAYTEWPTGLTEDNHPSGYY*

SD04526.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16272-PA 560 GG16272-PA 31..560 1..574 1169 59 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32452-PC 574 CG32452-PC 1..574 1..574 3004 100 Plus
CG32452-PB 574 CG32452-PB 1..574 1..574 3004 100 Plus
CG32452-PA 574 CG32452-PA 1..574 1..574 3004 100 Plus
Srp54-PA 513 CG4602-PA 284..500 219..446 197 37 Plus
CG9915-PC 820 CG9915-PC 166..434 193..443 187 34.9 Plus
CG9915-PC 820 CG9915-PC 208..461 184..442 187 33.2 Plus
CG9915-PB 820 CG9915-PB 166..434 193..443 187 34.9 Plus
CG9915-PB 820 CG9915-PB 208..461 184..442 187 33.2 Plus
CG7971-PG 1062 CG7971-PG 276..702 83..465 181 25.9 Plus
CG7971-PA 1062 CG7971-PA 276..702 83..465 181 25.9 Plus
CG7971-PC 1107 CG7971-PC 276..702 83..465 181 25.9 Plus
CG7971-PF 1655 CG7971-PF 501..927 83..465 181 25.9 Plus
CG9915-PC 820 CG9915-PC 48..409 93..446 174 30.2 Plus
CG9915-PC 820 CG9915-PC 173..494 119..441 174 33.2 Plus
CG9915-PB 820 CG9915-PB 48..409 93..446 174 30.2 Plus
CG9915-PB 820 CG9915-PB 173..494 119..441 174 33.2 Plus
CG5808-PA 653 CG5808-PA 355..653 141..443 170 25.2 Plus
Ctr9-PA 1150 CG2469-PA 947..1147 120..341 168 32.9 Plus
Ctr9-PB 1150 CG2469-PB 947..1147 120..341 168 32.9 Plus
CG9915-PC 820 CG9915-PC 3..291 134..435 163 29.3 Plus
CG9915-PB 820 CG9915-PB 3..291 134..435 163 29.3 Plus
SRm160-PA 954 CG11274-PA 111..318 224..442 163 30.8 Plus
CG6695-PB 715 CG6695-PB 414..595 280..489 162 34.6 Plus
CG6695-PA 961 CG6695-PA 414..595 280..489 162 34.6 Plus
SRm160-PA 954 CG11274-PA 121..335 181..405 159 28.3 Plus
Srp54-PA 513 CG4602-PA 284..459 265..455 158 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22466-PA 288 GM22466-PA 1..202 1..219 822 76.3 Plus
Dsec\GM22466-PA 288 GM22466-PA 202..288 490..574 403 83.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15048-PA 303 GD15048-PA 1..217 1..219 888 81.4 Plus
Dsim\GD15048-PA 303 GD15048-PA 217..303 490..574 404 83.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22633-PA 342 GE22633-PA 29..252 1..212 623 64.4 Plus
Dyak\GE22633-PA 342 GE22633-PA 251..342 483..574 356 69.6 Plus

SD04526.hyp Sequence

Translation from 246 to 1970

> SD04526.hyp
MSHKGSTHIAHRRDIGDTTKAHVQDGEVLSSETNEHDGFPQEAYIKTEPL
CEDLSEVLDELGEILDEELADMLDMRQSNIIYRDQGEIMDKEEAEVDEEE
AGTPPAPSISLTDDASLFTRRSRPYADDSPLSFSGSLYEPGGSSGEDQKE
PVRGNNLHEIALVRFRNCPEQSLKRCSIDAFVERKFPSENKINRRSTRST
SNEKSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTHKRRSSPS
REHIRSRKRCYSRDRRERRSRLPSRRKLISRSRSPDHRSRSRYRSLGKGS
RHASPCAGNRHRSLRSPSVERRLGSRNSPVRRSRYRSRSNSRLIKHGVAH
RIESRAYRGDRSRSRCRSARKPLRKCSRSKSKSVRITQQELSRRASKARS
KSKHRPLKTVACRRSRSRSNSPHTRLRRVSKSSSQPAHTQQRNTTSPPLA
AISPRPISPIVTLHDNRTSHPKEMIQYLLPTPTVPQIFYRQTNYTHTEYS
AHAGNVTGFFGQPFPVLEPYDVRHRLSTTRSLYYVGPNDLRHHIQGIYSH
QPAFNAYTEWPTGLTEDNHPSGYY*

SD04526.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32452-PC 574 CG32452-PC 1..574 1..574 3004 100 Plus
CG32452-PB 574 CG32452-PB 1..574 1..574 3004 100 Plus
CG32452-PA 574 CG32452-PA 1..574 1..574 3004 100 Plus
Srp54-PA 513 CG4602-PA 284..500 219..446 197 37 Plus
CG9915-PC 820 CG9915-PC 166..434 193..443 187 34.9 Plus
Srp54-PA 513 CG4602-PA 284..459 265..455 158 35.8 Plus