SD04526.complete Sequence
2046 bp (2046 high quality bases) assembled on 2001-07-04
GenBank Submission: AY052096
> SD04526.complete
CAGTTATCGAATATATTAACACCAATGCTATGCTGATAAATACAATTAAT
TCAAACGTATGGCAAACGTATGAGGACGCTAAGTGCAGAAACAGTAATTT
TGTATTGGTATCAACTCTGACTCCGGCCTCACAAGTGAAAAAAAGCATTG
TCGCAAGGTGTGTATTTCAACCGGCGTCGGCCTGTTGCGTCTATGAAGAA
AAGTCACCAGTTGCCTAAACGAAATATGATTCCTCATGTATAGCCCATGA
GCCACAAGGGCAGCACGCACATAGCCCACAGACGGGATATCGGAGACACC
ACGAAAGCACATGTGCAGGATGGAGAAGTACTTAGCTCGGAAACCAATGA
ACACGATGGATTTCCACAGGAAGCTTATATTAAAACCGAGCCCTTATGCG
AAGATCTGTCGGAAGTCCTGGACGAGCTGGGGGAAATACTGGACGAGGAG
CTGGCCGATATGTTGGATATGAGGCAGAGCAACATTATATATAGGGACCA
GGGCGAGATTATGGATAAGGAGGAGGCCGAGGTGGATGAGGAAGAAGCGG
GCACGCCACCGGCGCCCTCCATCTCACTTACCGACGACGCCTCTTTATTC
ACCAGGAGATCAAGACCATATGCTGACGATTCTCCCCTAAGCTTTAGTGG
ATCTTTATACGAGCCGGGAGGCTCAAGTGGGGAAGACCAGAAAGAACCAG
TTCGTGGCAATAATTTACATGAAATTGCCTTAGTGCGGTTCCGAAACTGT
CCAGAACAGAGCTTAAAACGCTGCAGTATCGACGCTTTCGTCGAACGAAA
GTTCCCCTCGGAGAATAAGATAAATCGAAGAAGCACCCGCAGCACATCCA
ATGAAAAGAGTGCCACACAAAGACGATCGGTTAGTCGCAGTCACATCCCA
AGGTGCAGAGGCAGAAGAAGGAGCCAGTCCAGGAGCCCAACAGAACCAAA
GCAAAGATCGAGTCCGCCCACCCACAAAAGGCGATCAAGTCCATCTAGAG
AACACATTAGGTCTCGGAAGCGATGCTACTCTAGGGACCGAAGAGAGCGG
CGTAGCAGACTACCATCTAGGCGCAAACTTATCTCGAGGTCCCGGAGCCC
AGATCACAGAAGTCGTTCGCGATATCGTTCTCTAGGCAAAGGGTCAAGAC
ATGCGTCGCCCTGTGCTGGGAACCGTCACAGATCCCTCAGATCTCCAAGC
GTTGAACGGAGGCTTGGGTCGCGGAATTCGCCAGTACGCCGTTCTCGGTA
TCGGTCAAGGAGCAACTCTAGGCTTATCAAACATGGGGTAGCACATCGCA
TAGAAAGTAGGGCTTACAGGGGGGATCGTTCGAGGAGCAGGTGCCGGTCA
GCAAGAAAACCCCTCCGAAAGTGTTCTAGAAGCAAATCCAAATCTGTAAG
AATCACACAGCAGGAGCTTTCAAGACGCGCATCCAAGGCGCGATCAAAGA
GTAAACACAGGCCACTAAAGACCGTGGCTTGCCGACGTTCCAGAAGCCGA
TCCAACAGCCCCCATACTCGCCTTCGCAGAGTTTCAAAGAGTAGCTCCCA
GCCCGCACACACCCAACAGCGGAATACCACCTCGCCACCTTTGGCCGCAA
TATCGCCACGCCCCATTTCTCCGATAGTTACACTTCACGATAATCGAACT
AGTCATCCAAAGGAGATGATCCAGTACCTGCTTCCTACCCCAACTGTTCC
TCAAATTTTCTACAGGCAGACGAACTACACCCATACGGAGTACAGTGCGC
ATGCCGGCAACGTTACCGGATTCTTCGGGCAGCCTTTTCCGGTGCTGGAG
CCGTACGACGTGCGCCACCGCTTGTCCACCACGCGTTCACTCTATTACGT
AGGGCCCAACGATCTGCGGCACCATATCCAGGGAATATACTCGCACCAAC
CCGCCTTTAATGCCTACACCGAGTGGCCCACGGGGTTAACTGAGGATAAC
CATCCTAGTGGTTACTACTGAAAGGCTCCCTATGGTTAAGAATAAACATC
ATTACTTGCAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
SD04526.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32452-RA | 2008 | CG32452-RA | 29..2008 | 36..2015 | 9855 | 99.8 | Plus |
CG32452-RB | 2209 | CG32452-RB | 171..1944 | 242..2015 | 8840 | 99.8 | Plus |
CG32452-RB | 2209 | CG32452-RB | 51..172 | 36..157 | 610 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 22706642..22708648 | 1..2014 | 9870 | 99.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22717739..22719746 | 1..2015 | 9875 | 99.5 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 22710867..22712846 | 36..2015 | 9855 | 99.8 | Plus |
Blast to na_te.dros performed on 2019-03-16 20:15:40 has no hits.
SD04526.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:36 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 22706642..22708648 | 1..2014 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:10 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RB | 1..1725 | 247..1971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:44 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RB | 1..1725 | 247..1971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 1..1725 | 247..1971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:55 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RB | 1..1725 | 247..1971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 1..1725 | 247..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:04 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 1..2007 | 1..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:44 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 1..2007 | 1..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 12..2018 | 1..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:55 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 1..2007 | 1..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32452-RA | 12..2018 | 1..2014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22717739..22719745 | 1..2014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22717739..22719745 | 1..2014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:36 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22717739..22719745 | 1..2014 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:16 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22710839..22712845 | 1..2014 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:35 Download gff for
SD04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22710839..22712845 | 1..2014 | 99 | | Plus |
SD04526.pep Sequence
Translation from 246 to 1970
> SD04526.pep
MSHKGSTHIAHRRDIGDTTKAHVQDGEVLSSETNEHDGFPQEAYIKTEPL
CEDLSEVLDELGEILDEELADMLDMRQSNIIYRDQGEIMDKEEAEVDEEE
AGTPPAPSISLTDDASLFTRRSRPYADDSPLSFSGSLYEPGGSSGEDQKE
PVRGNNLHEIALVRFRNCPEQSLKRCSIDAFVERKFPSENKINRRSTRST
SNEKSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTHKRRSSPS
REHIRSRKRCYSRDRRERRSRLPSRRKLISRSRSPDHRSRSRYRSLGKGS
RHASPCAGNRHRSLRSPSVERRLGSRNSPVRRSRYRSRSNSRLIKHGVAH
RIESRAYRGDRSRSRCRSARKPLRKCSRSKSKSVRITQQELSRRASKARS
KSKHRPLKTVACRRSRSRSNSPHTRLRRVSKSSSQPAHTQQRNTTSPPLA
AISPRPISPIVTLHDNRTSHPKEMIQYLLPTPTVPQIFYRQTNYTHTEYS
AHAGNVTGFFGQPFPVLEPYDVRHRLSTTRSLYYVGPNDLRHHIQGIYSH
QPAFNAYTEWPTGLTEDNHPSGYY*
SD04526.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16272-PA | 560 | GG16272-PA | 31..560 | 1..574 | 1169 | 59 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32452-PC | 574 | CG32452-PC | 1..574 | 1..574 | 3004 | 100 | Plus |
CG32452-PB | 574 | CG32452-PB | 1..574 | 1..574 | 3004 | 100 | Plus |
CG32452-PA | 574 | CG32452-PA | 1..574 | 1..574 | 3004 | 100 | Plus |
Srp54-PA | 513 | CG4602-PA | 284..500 | 219..446 | 197 | 37 | Plus |
CG9915-PC | 820 | CG9915-PC | 166..434 | 193..443 | 187 | 34.9 | Plus |
CG9915-PC | 820 | CG9915-PC | 208..461 | 184..442 | 187 | 33.2 | Plus |
CG9915-PB | 820 | CG9915-PB | 166..434 | 193..443 | 187 | 34.9 | Plus |
CG9915-PB | 820 | CG9915-PB | 208..461 | 184..442 | 187 | 33.2 | Plus |
CG7971-PG | 1062 | CG7971-PG | 276..702 | 83..465 | 181 | 25.9 | Plus |
CG7971-PA | 1062 | CG7971-PA | 276..702 | 83..465 | 181 | 25.9 | Plus |
CG7971-PC | 1107 | CG7971-PC | 276..702 | 83..465 | 181 | 25.9 | Plus |
CG7971-PF | 1655 | CG7971-PF | 501..927 | 83..465 | 181 | 25.9 | Plus |
CG9915-PC | 820 | CG9915-PC | 48..409 | 93..446 | 174 | 30.2 | Plus |
CG9915-PC | 820 | CG9915-PC | 173..494 | 119..441 | 174 | 33.2 | Plus |
CG9915-PB | 820 | CG9915-PB | 48..409 | 93..446 | 174 | 30.2 | Plus |
CG9915-PB | 820 | CG9915-PB | 173..494 | 119..441 | 174 | 33.2 | Plus |
CG5808-PA | 653 | CG5808-PA | 355..653 | 141..443 | 170 | 25.2 | Plus |
Ctr9-PA | 1150 | CG2469-PA | 947..1147 | 120..341 | 168 | 32.9 | Plus |
Ctr9-PB | 1150 | CG2469-PB | 947..1147 | 120..341 | 168 | 32.9 | Plus |
CG9915-PC | 820 | CG9915-PC | 3..291 | 134..435 | 163 | 29.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 3..291 | 134..435 | 163 | 29.3 | Plus |
SRm160-PA | 954 | CG11274-PA | 111..318 | 224..442 | 163 | 30.8 | Plus |
CG6695-PB | 715 | CG6695-PB | 414..595 | 280..489 | 162 | 34.6 | Plus |
CG6695-PA | 961 | CG6695-PA | 414..595 | 280..489 | 162 | 34.6 | Plus |
SRm160-PA | 954 | CG11274-PA | 121..335 | 181..405 | 159 | 28.3 | Plus |
Srp54-PA | 513 | CG4602-PA | 284..459 | 265..455 | 158 | 35.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22466-PA | 288 | GM22466-PA | 1..202 | 1..219 | 822 | 76.3 | Plus |
Dsec\GM22466-PA | 288 | GM22466-PA | 202..288 | 490..574 | 403 | 83.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15048-PA | 303 | GD15048-PA | 1..217 | 1..219 | 888 | 81.4 | Plus |
Dsim\GD15048-PA | 303 | GD15048-PA | 217..303 | 490..574 | 404 | 83.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22633-PA | 342 | GE22633-PA | 29..252 | 1..212 | 623 | 64.4 | Plus |
Dyak\GE22633-PA | 342 | GE22633-PA | 251..342 | 483..574 | 356 | 69.6 | Plus |
SD04526.hyp Sequence
Translation from 246 to 1970
> SD04526.hyp
MSHKGSTHIAHRRDIGDTTKAHVQDGEVLSSETNEHDGFPQEAYIKTEPL
CEDLSEVLDELGEILDEELADMLDMRQSNIIYRDQGEIMDKEEAEVDEEE
AGTPPAPSISLTDDASLFTRRSRPYADDSPLSFSGSLYEPGGSSGEDQKE
PVRGNNLHEIALVRFRNCPEQSLKRCSIDAFVERKFPSENKINRRSTRST
SNEKSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTHKRRSSPS
REHIRSRKRCYSRDRRERRSRLPSRRKLISRSRSPDHRSRSRYRSLGKGS
RHASPCAGNRHRSLRSPSVERRLGSRNSPVRRSRYRSRSNSRLIKHGVAH
RIESRAYRGDRSRSRCRSARKPLRKCSRSKSKSVRITQQELSRRASKARS
KSKHRPLKTVACRRSRSRSNSPHTRLRRVSKSSSQPAHTQQRNTTSPPLA
AISPRPISPIVTLHDNRTSHPKEMIQYLLPTPTVPQIFYRQTNYTHTEYS
AHAGNVTGFFGQPFPVLEPYDVRHRLSTTRSLYYVGPNDLRHHIQGIYSH
QPAFNAYTEWPTGLTEDNHPSGYY*
SD04526.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32452-PC | 574 | CG32452-PC | 1..574 | 1..574 | 3004 | 100 | Plus |
CG32452-PB | 574 | CG32452-PB | 1..574 | 1..574 | 3004 | 100 | Plus |
CG32452-PA | 574 | CG32452-PA | 1..574 | 1..574 | 3004 | 100 | Plus |
Srp54-PA | 513 | CG4602-PA | 284..500 | 219..446 | 197 | 37 | Plus |
CG9915-PC | 820 | CG9915-PC | 166..434 | 193..443 | 187 | 34.9 | Plus |
Srp54-PA | 513 | CG4602-PA | 284..459 | 265..455 | 158 | 35.8 | Plus |