Clone SD04652 Report

Search the DGRC for SD04652

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:52
Vector:pOT2
Associated Gene/TranscriptTfb1-RA
Protein status:SD04652.pep: gold
Preliminary Size:2138
Sequenced Size:2021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8151 2001-01-01 Release 2 assignment
CG8151 2001-07-04 Blastp of sequenced clone
Tfb1 2008-04-29 Release 5.5 accounting
Tfb1 2008-08-15 Release 5.9 accounting
Tfb1 2008-12-18 5.12 accounting

Clone Sequence Records

SD04652.complete Sequence

2021 bp (2021 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052097

> SD04652.complete
CTGACTGAGGTTGCAGGAATCTTCTGGCGTCCCCCTTCTCGTCCTTTCGA
AGGCTCTCATGTGAGACGGCGAGCGTGGATCTGCGACTGGGACTTCGACT
GCTGAGCGCCGGGCGTAGAACAAGATGACCACCAGCAGTGAGGACGTGCT
GCTCCAGATGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACG
TAATGAATGAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACA
GTCTCCCATCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGG
CAAGCCCAAGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGA
CCTTCCACTTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGG
GACAAGGTCAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAA
GGTGGACAAAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCA
ACCTGCTGCAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGC
GATGAGTTCTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGG
CAGATCCCAGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGC
CGCAGACAGACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTG
ATTCACTGCATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGA
GAATGTGCCTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCC
AATCACACTACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATA
TTCACGGAGTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCA
GCAGGGAGCTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTC
CTTTAGAAGAGGGCTTTGGCAGCGTAGCAGGGGACCGCAACGTCGTGAAC
AGCGGGAATATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTC
CATCATGGTGCTTAAGACCTGTGCTAACGTGACCTCAGCGCCGTCAACTA
TGACCAATGGTACCAATAATGCCAACGGGCCTGTTTCCCAATCCGCGTAT
ACGAACGGGATGAATGGAAAGGGCCAGGCCACGGCCACCGCGACGAAGAG
TTCCTCCGATCAGGTGGACAAAGACGAGCCGCAGAGCAAAAAGCAACGAC
TGATGGAAAAGATTCACTATGTGGATCTCGGGGACCCTATATTGGAGGGA
GATGATTCCGCCAACGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTC
CAAAGTGGAGCGTTACCTCAATGGCCCTGTCCAGAACAGCATGTACGACA
ACCACAACGATCCAATGAGTCTTGAAGAGGTGCAGTACAAGCTGGTGCGG
AATTCGGAGTCATGGCTAAACCGCAACGTGCAACGAACGTTCATCTGTTC
TAAGGCGGCAGTAAATGCTCTGGGTGAACTAAGTCCTGGCGGTTCCATGA
TGCGCGGTTTCCAAGAGCAGTCAGCGGGACAACTTGTTCCGAACGACTTC
CAACGAGAGCTGCGCCACTTATACCTTTCGCTGTCCGAGCTGCTGAAACA
CTTTTGGAGCTGCTTTCCGCCCACCTCAGAAGAGCTGGAGACAAAGTTAC
AGCGTATGCACGAGACGTTGCAGCGCTTCAAAATGGCCAAACTAGTGCCT
TTTGAGAACCGCGCTATGCACGAACTTTCGCCACTGCGATCCTCGCTGAC
GCAGCACTTGAATCAGCTGCTGCGCACCGCCAACAGCAAGTTCGCAACTT
GGAAGGAGCGAAAACTGCGCAACACCAGGTAGCAAACGCTCAACGGAGGC
GAGCTCGAGCATCTGCCACACACCTCAAGAACCATTATTATAGACTAGGC
TTAACTATAAGAGTATGCGGAACGCATTGGAATAAAACATTATTTGCAAC
TTGAAAAAAAAAAAAAAAAAA

SD04652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RB 2081 Tfb1-RB 61..2063 1..2003 9970 99.8 Plus
Tfb1-RA 2190 Tfb1-RA 184..2179 8..2003 9935 99.8 Plus
Tfb1-RC 2142 Tfb1-RC 70..2063 10..2003 9925 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10251276..10252239 617..1580 4820 100 Plus
chr2R 21145070 chr2R 10250880..10251220 279..619 1705 100 Plus
chr2R 21145070 chr2R 10250547..10250817 8..278 1355 100 Plus
chr2R 21145070 chr2R 10252525..10252777 1751..2003 1250 99.6 Plus
chr2R 21145070 chr2R 10252300..10252475 1581..1756 880 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14363972..14364935 617..1580 4790 99.8 Plus
2R 25286936 2R 14363576..14363916 279..619 1690 99.7 Plus
2R 25286936 2R 14363243..14363513 8..278 1355 100 Plus
2R 25286936 2R 14365221..14365473 1751..2003 1250 99.6 Plus
2R 25286936 2R 14364996..14365171 1581..1756 880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14365171..14366134 617..1580 4790 99.7 Plus
2R 25260384 2R 14364775..14365115 279..619 1690 99.7 Plus
2R 25260384 2R 14364442..14364712 8..278 1355 100 Plus
2R 25260384 2R 14366420..14366672 1751..2003 1250 99.6 Plus
2R 25260384 2R 14366195..14366370 1581..1756 880 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:58:33 has no hits.

SD04652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:59:31 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10250540..10250817 1..278 98 -> Plus
chr2R 10250880..10251218 279..617 100 -> Plus
chr2R 10251277..10252239 618..1580 100 -> Plus
chr2R 10252300..10252475 1581..1756 100 -> Plus
chr2R 10252531..10252777 1757..2003 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:18 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 1..1758 125..1882 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:46 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 1..1758 125..1882 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:23:09 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 1..1758 125..1882 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:58 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 1..1758 125..1882 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:51:41 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 1..1758 125..1882 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:05:08 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RB 20..2022 1..2003 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:46 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RB 20..2022 1..2003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:09 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RB 23..2025 1..2003 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:58 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RB 20..2022 1..2003 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:51:41 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RB 23..2025 1..2003 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:31 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363236..14363513 1..278 98 -> Plus
2R 14363576..14363914 279..617 99 -> Plus
2R 14363973..14364935 618..1580 99 -> Plus
2R 14364996..14365171 1581..1756 100 -> Plus
2R 14365227..14365473 1757..2003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:31 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363236..14363513 1..278 98 -> Plus
2R 14363576..14363914 279..617 99 -> Plus
2R 14363973..14364935 618..1580 99 -> Plus
2R 14364996..14365171 1581..1756 100 -> Plus
2R 14365227..14365473 1757..2003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:31 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363236..14363513 1..278 98 -> Plus
2R 14363576..14363914 279..617 99 -> Plus
2R 14363973..14364935 618..1580 99 -> Plus
2R 14364996..14365171 1581..1756 100 -> Plus
2R 14365227..14365473 1757..2003 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:09 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10250741..10251018 1..278 98 -> Plus
arm_2R 10251081..10251419 279..617 99 -> Plus
arm_2R 10251478..10252440 618..1580 99 -> Plus
arm_2R 10252501..10252676 1581..1756 100 -> Plus
arm_2R 10252732..10252978 1757..2003 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:38 Download gff for SD04652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14364775..14365113 279..617 99 -> Plus
2R 14364435..14364712 1..278 98 -> Plus
2R 14365172..14366134 618..1580 99 -> Plus
2R 14366195..14366370 1581..1756 100 -> Plus
2R 14366426..14366672 1757..2003 100   Plus

SD04652.pep Sequence

Translation from 124 to 1881

> SD04652.pep
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTR*

SD04652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13498-PA 587 GF13498-PA 1..587 1..585 2829 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20446-PA 586 GG20446-PA 1..586 1..585 3110 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19743-PA 581 GH19743-PA 1..581 1..585 2750 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-PD 585 CG8151-PD 1..585 1..585 3052 100 Plus
Tfb1-PA 585 CG8151-PA 1..585 1..585 3052 100 Plus
Tfb1-PC 585 CG8151-PC 1..585 1..585 3052 100 Plus
Tfb1-PB 585 CG8151-PB 1..585 1..585 3052 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20277-PA 583 GI20277-PA 1..583 1..585 2752 87.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10686-PA 587 GL10686-PA 1..587 1..585 2804 88.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20852-PA 587 GA20852-PA 1..587 1..585 2804 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21534-PA 584 GM21534-PA 1..584 1..585 3089 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11042-PA 584 GD11042-PA 1..584 1..585 3104 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22005-PA 581 GJ22005-PA 1..581 1..585 2738 87.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21470-PA 585 GK21470-PA 1..585 1..585 2533 81.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13578-PA 586 GE13578-PA 1..586 1..585 3124 98.1 Plus

SD04652.hyp Sequence

Translation from 124 to 1881

> SD04652.hyp
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTR*

SD04652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-PD 585 CG8151-PD 1..585 1..585 3052 100 Plus
Tfb1-PA 585 CG8151-PA 1..585 1..585 3052 100 Plus
Tfb1-PC 585 CG8151-PC 1..585 1..585 3052 100 Plus
Tfb1-PB 585 CG8151-PB 1..585 1..585 3052 100 Plus