Clone SD04682 Report

Search the DGRC for SD04682

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:82
Vector:pOT2
Associated Gene/TranscriptNedd4-RK
Protein status:SD04682.pep: gold
Preliminary Size:4086
Sequenced Size:3641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7555 2001-10-10 Blastp of sequenced clone
Nedd4 2008-04-29 Release 5.5 accounting
Nedd4 2008-08-15 Release 5.9 accounting
Nedd4 2008-12-18 5.12 accounting

Clone Sequence Records

SD04682.complete Sequence

3641 bp (3641 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061595

> SD04682.complete
CGGCACGAGTCGATTTTGTCGCCGTTTTGTGCATTTTTCCCGTCCGGTGT
TTAAATTTTATTTAATACTGCGCGTGCGACATATATACAGGCACCTATAG
CCGACCGATATCGGCGATTAAGGCATGTGCGCCGCCGAAGCGGTCAAAGT
GATAATCGCTTGAATAGTGAGCAGTGTAGAATTTGCCGTGTGATAGAAGT
ACGTGATGATTTTCCGCAAATAGTGGATAAAGGCGAGCCCACACGCATAC
CACCGCAAAATATATACATAAATCGGGCGAAAATATAGTGGCCCGTGTTT
GTGCGTGTGTAAACAAGCTTCTCTAAAAGAAACAAACAACAACAACACAA
CAATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGGCGGCCCTTCCCGTC
CCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTGCCACGCCCGCCGCC
CCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCAAACGCGCCAGGAAT
TTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAGCAGTGAACGACTCT
GGGGACTCGTGTCACCTGCGAATCGTCGTACTCACCGGTCAGTCGCTGGC
CAAAAAGGATATATTCGGCGCCAGCGACCCGTATGTCAGAATCGATTTGA
ACACAATCAACGGTGATATTAATATTGACTCTGTTTTGACGAAGACCAAA
AAGAAGACACTGAATCCAACCTGGAATGAAGAGTTCATATTTAGAGTTAA
ACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGACGAGAATCGCCTGA
CACGCGACGACTTCCTGGGCATGGTGGAGCTGACCCTGGTGAATCTGCCT
ACCGAGCAGGAGGGTCGCACCATCGGAGAACAAAGCTACACTCTGCGCCC
GCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGGCACACTGCGCATCT
ACCACGCCTTTATCCGGGAGACGCGGGAGCAGAGCGAGCCATCTAGTGGC
AATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACCAATGCCGGTGAGAC
GTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCACGATGCCCTACCCG
CTGGATGGGAAGAACGCCAGGATGCCAACGGGCGCACGTACTATGTGAAT
CACACGGCGAGGACGACGCAATGGGATAGGCCTACTGTCTTAAACAGCCA
CAGTAGCCAATCCACTGACGACCAGTTGGCCTCGGATTTCCAGAGACGTT
TCCACATCAGCGTGGACGACACGGAGTCAGGACGTTCGGCGAATGAAGAC
ACCGATCACACAGACAGCCACAATCCCTCTGACATCTCAGCTCCGTCCAC
ACGACGCAATTCCGAGGAAGACAACGCGGCTGTGCCTCCCATGGAACAAA
ATACTGGTGGTGAAGAGGAACCCCTGCCACCGCGCTGGTCGATGCAGGTA
GCCCCCAACGGAAGGACATTCTTCATTGATCATGCGTCCCGGAGGACTAC
TTGGATAGACCCGCGCAACGGACGGGCCAGCCCTATGCCAAATCAAACTC
GTCGCGTCGAGGACGACCTGGGTCCTTTACCAGAGGGCTGGGAGGAGCGA
GTACACACCGACGGACGCGTATTCTATATAGATCATAACACGCGAACTAC
GCAGTGGGAAGATCCTCGCTTGTCCAATCCAAATATTGCCGGTCAGGCTG
TGCCCTATTCTCGAGATTACAAGCAAAAATACGAGTATTTCAAGAGTCAC
ATTAGAAAGCCTACAAATGTACCAAATAAATTTGAAATACGTATTCGACG
TACGTCGATACTGGAGGATTCTTACAGAATTATTAGTTCGGTAACGAAGA
CCGATTTACTAAAGACTAAATTATGGGTAGAGTTTGAAGGAGAAACTGGC
TTAGATTATGGAGGCCTCGCAAGGGAATGGTTCTATTTATTATCAAAAGA
AATGTTTAATCCGTACTACGGACTATTCGAGTACTCGGCCATGGACAACT
ACACGCTTCAGATAAACAATGGTAGTGGTTTGTGCAACGAGGAGCATTTA
AGTTACTTTAAATTCATTGGCCGTATTGCGGGCATGGCTGTGTATCATGG
AAAGCTGCTAGATGCCTTCTTCATTCGTCCATTCTACAAGATGATGCTGC
AGAAGCCGATTGACCTAAAGGACATGGAGTCTGTGGACACGGAGTACTAC
AACTCGCTGATGTGGATTAAGGAGAACGATCCACGCATTCTGGAACTGAC
TTTCTGCCTGGATGAAGACGTTTTTGGCCAGAAGAGTCAGCACGAACTAA
AGCCCGGCGGTGCCAACATAGACGTGACTAACGAAAACAAGGATGAATAC
ATTAAATTGGTTATCGAATGGCGCTTTGTGGCACGTGTCAAGGAACAGAT
GTCGTCCTTCCTTGATGGTTTTGGATCGATAATTCCTCTGAATCTTATTA
AGATTTTCGACGAGCACGAACTGGAGCTACTGATGTGTGGCATACAGAAC
ATCGATGTGAAGGATTGGCGCGAGAATACTCTGTACAAGGGCGACTACCA
CATGAATCATATTATTATTCAGTGGTTCTGGAGGGCTGTACTTTCCTTCT
CCAACGAGATGCGTTCTCGTCTGCTGCAATTTGTTACGGGCACTTCACGC
GTGCCCATGAACGGTTTCAAGGAGCTGTACGGCTCAAATGGCCCCCAGAT
GTTTACTATCGAAAAGTGGGGCACTCCTAATAACTTTCCAAGGGCACATA
CCTGTTTCAATCGCCTGGACCTGCCACCCTATGAAGGCTACCTTCAACTG
AAGGACAAACTGATCAAGGCCATCGAGGGCAGCCAAGGATTTGCTGGAGT
TGATTAATAACACCGGCAACGGGAGTGCAAGCGAATGGCTTTGGCTGGAG
GTGCAGCAACAGTTTCTGCAGCGCCAGGAGGAGGAGCAGTTACAACGATT
CCACACATCACAAGTACCACAAGATCAACAACAACAACGACTTGAAGAGC
AGCAACAGCGAAATCAGCGGCACAACCGCAACCTCATTGCATTCACTTGG
AATAGCTCCGCCAGCAGATCGTGTACTTATTTGTTCGTTTGCTTTTGTAT
TATAATCATTTTTGCTAGTTTAGTGTTATTTCGTATGTATTTTAACTAGG
CGCCAAAACTCACACACTACACATACACCTTAAACAAGCAGAGAAAAAAA
GGATCCCAATAAAGCTGCGCATGGTGAACCACACGAACCTAACAAACGAG
TCCAAATTATATATAAATATATTTATTACATTGCCGACAATTGTAAAAAG
TTGAGAACGTTTTACAAACTAAGAGAGAAGAATCCAAACTAACTATTAAA
TCTATAGAGTCAAAAGTATATCTTGTATGTATATGCAGAGAAAACTTTTT
ATAATTGTTATTTTTATGCGCTATTCCTCTATACACAGCAAAAAACTAAA
GGCGAAAAAAAATTAAAATAAAATAAAAAAGTTAATATTTGTAATCTGAT
GGATGAATATTTTTAAACAAATTAAATTTTCTATTCTGTATAACTGTATG
TGTATTCGTAATAATGATAATGTTAGTTCGTAAAATCGCTCTTTACTATT
AAATAAAAAGACAACATAATATAAAAAAAAAAAAAAAAAAA

SD04682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd4-RJ 4524 Nedd4-RJ 1907..4050 1290..3434 10610 99.7 Plus
Nedd4-RI 4452 Nedd4-RI 1836..3978 1291..3434 10605 99.7 Plus
Nedd4.c 4620 Nedd4.c 1836..3978 1291..3434 10605 99.7 Plus
Nedd4-RJ 4524 Nedd4-RJ 108..1389 10..1291 6380 99.8 Plus
Nedd4-RI 4452 Nedd4-RI 108..1389 10..1291 6380 99.8 Plus
Nedd4.c 4620 Nedd4.c 108..1389 10..1291 6380 99.8 Plus
Nedd4-RJ 4524 Nedd4-RJ 4056..4251 3434..3631 890 97.4 Plus
Nedd4-RI 4452 Nedd4-RI 3984..4179 3434..3631 890 97.4 Plus
Nedd4.c 4620 Nedd4.c 3984..4179 3434..3631 890 97.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17535021..17535895 2754..3622 4205 99 Plus
chr3L 24539361 chr3L 17534549..17534947 2356..2754 1995 100 Plus
chr3L 24539361 chr3L 17519646..17519950 10..314 1525 100 Plus
chr3L 24539361 chr3L 17534191..17534484 2062..2355 1470 100 Plus
chr3L 24539361 chr3L 17533290..17533527 1400..1637 1190 100 Plus
chr3L 24539361 chr3L 17520337..17520563 315..541 1135 100 Plus
chr3L 24539361 chr3L 17529093..17529262 746..915 835 99.4 Plus
chr3L 24539361 chr3L 17533973..17534131 1903..2061 795 100 Plus
chr3L 24539361 chr3L 17530216..17530364 915..1063 745 100 Plus
chr3L 24539361 chr3L 17533770..17533911 1763..1904 710 100 Plus
chr3L 24539361 chr3L 17530427..17530552 1063..1188 630 100 Plus
chr3L 24539361 chr3L 17533586..17533710 1638..1762 625 100 Plus
chr3L 24539361 chr3L 17533030..17533138 1291..1399 545 100 Plus
chr3L 24539361 chr3L 17530827..17530929 1189..1291 515 100 Plus
chr3L 24539361 chr3L 17528337..17528421 622..706 425 100 Plus
chr3L 24539361 chr3L 17528187..17528270 541..624 420 100 Plus
chr3L 24539361 chr3L 17528980..17529022 705..747 215 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17545507..17546387 2754..3631 4090 98.3 Plus
3L 28110227 3L 17545035..17545433 2356..2754 1995 100 Plus
3L 28110227 3L 17530118..17530422 10..314 1525 100 Plus
3L 28110227 3L 17544677..17544970 2062..2355 1470 100 Plus
3L 28110227 3L 17543764..17544001 1400..1637 1190 100 Plus
3L 28110227 3L 17530809..17531035 315..541 1135 100 Plus
3L 28110227 3L 17539567..17539736 746..915 835 99.4 Plus
3L 28110227 3L 17544459..17544617 1903..2061 795 100 Plus
3L 28110227 3L 17540690..17540838 915..1063 745 100 Plus
3L 28110227 3L 17544256..17544397 1763..1904 695 99.3 Plus
3L 28110227 3L 17540901..17541026 1063..1188 630 100 Plus
3L 28110227 3L 17544060..17544184 1638..1762 610 99.2 Plus
3L 28110227 3L 17543504..17543612 1291..1399 545 100 Plus
3L 28110227 3L 17541301..17541403 1189..1291 515 100 Plus
3L 28110227 3L 17538811..17538895 622..706 425 100 Plus
3L 28110227 3L 17538661..17538744 541..624 405 98.8 Plus
3L 28110227 3L 17539454..17539496 705..747 215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17538607..17539286 2754..3434 3320 99.4 Plus
3L 28103327 3L 17538135..17538533 2356..2754 1995 100 Plus
3L 28103327 3L 17523218..17523522 10..314 1525 100 Plus
3L 28103327 3L 17537777..17538070 2062..2355 1470 100 Plus
3L 28103327 3L 17536864..17537101 1400..1637 1190 100 Plus
3L 28103327 3L 17523909..17524135 315..541 1135 100 Plus
3L 28103327 3L 17539292..17539487 3434..3631 890 97.4 Plus
3L 28103327 3L 17532667..17532836 746..915 835 99.4 Plus
3L 28103327 3L 17537559..17537717 1903..2061 795 100 Plus
3L 28103327 3L 17533790..17533938 915..1063 745 100 Plus
3L 28103327 3L 17537356..17537497 1763..1904 695 99.2 Plus
3L 28103327 3L 17534001..17534126 1063..1188 630 100 Plus
3L 28103327 3L 17537160..17537284 1638..1762 610 99.2 Plus
3L 28103327 3L 17536604..17536712 1291..1399 545 100 Plus
3L 28103327 3L 17534401..17534503 1189..1291 515 100 Plus
3L 28103327 3L 17531911..17531995 622..706 425 100 Plus
3L 28103327 3L 17531761..17531844 541..624 405 98.8 Plus
3L 28103327 3L 17532554..17532596 705..747 215 100 Plus
Blast to na_te.dros performed 2019-03-15 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2478 2904..3035 193 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2458 2903..3036 188 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6672..6850 2896..3067 175 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6852 2903..3036 172 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6798 2950..3036 167 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2577 2856..3079 163 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2398 2960..3036 162 69.2 Plus
roo 9092 roo DM_ROO 9092bp 1063..1161 2894..2995 160 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6840 2919..3036 159 63.6 Plus
transib4 2656 transib4 TRANSIB4 2656bp 35..127 3486..3391 158 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2831..2983 2888..3036 142 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1519..1582 2974..3036 128 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6777 2978..3036 126 70 Plus
roo 9092 roo DM_ROO 9092bp 1060..1161 2924..3036 124 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1059..1134 2960..3036 121 65.4 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 823..965 3463..3621 119 59.4 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 2363..2469 3506..3614 117 57.8 Plus

SD04682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:37:58 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17533770..17533911 1763..1904 100 -> Plus
chr3L 17533975..17534131 1905..2061 100 -> Plus
chr3L 17534191..17534484 2062..2355 100 -> Plus
chr3L 17533290..17533527 1400..1637 100 -> Plus
chr3L 17533586..17533710 1638..1762 100 -> Plus
chr3L 17519646..17519950 10..314 100 -> Plus
chr3L 17520337..17520563 315..541 100 -> Plus
chr3L 17528188..17528270 542..624 100 -> Plus
chr3L 17528340..17528421 625..706 100 -> Plus
chr3L 17528982..17529020 707..745 100 -> Plus
chr3L 17529093..17529262 746..915 99 -> Plus
chr3L 17530217..17530364 916..1063 100 -> Plus
chr3L 17530428..17530552 1064..1188 100 -> Plus
chr3L 17530827..17530929 1189..1291 100 -> Plus
chr3L 17533031..17533138 1292..1399 100 -> Plus
chr3L 17534549..17534947 2356..2754 100 -> Plus
chr3L 17535022..17535895 2755..3622 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:49:39 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RH 1..941 353..1293 99 <- Plus
Nedd4-RH 1422..2985 1294..2857 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:04 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RJ 1..941 353..1293 99 <- Plus
Nedd4-RJ 1461..3024 1294..2857 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:37:40 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RK 1..2505 353..2857 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:01 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RH 1..941 353..1293 99 <- Plus
Nedd4-RH 1422..2985 1294..2857 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:08 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RK 1..2505 353..2857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:49:38 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RH 36..1319 10..1293 99 <- Plus
Nedd4-RH 1800..4131 1294..3622 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:04 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RH 36..1319 10..1293 99 <- Plus
Nedd4-RH 1800..4129 1294..3620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:37:40 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RK 38..3651 10..3620 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:01 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RH 36..1319 10..1293 99 <- Plus
Nedd4-RH 1800..4131 1294..3622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:08 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd4-RK 38..3651 10..3620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:58 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17530809..17531035 315..541 100 -> Plus
3L 17538662..17538744 542..624 98 -> Plus
3L 17538814..17538895 625..706 100 -> Plus
3L 17539456..17539494 707..745 100 -> Plus
3L 17530118..17530422 10..314 100 -> Plus
3L 17544677..17544970 2062..2355 100 -> Plus
3L 17539567..17539736 746..915 99 -> Plus
3L 17540691..17540838 916..1063 100 -> Plus
3L 17540902..17541026 1064..1188 100 -> Plus
3L 17541301..17541403 1189..1291 100 -> Plus
3L 17543505..17543612 1292..1399 100 -> Plus
3L 17543764..17544001 1400..1637 100 -> Plus
3L 17544060..17544184 1638..1762 99 -> Plus
3L 17544256..17544397 1763..1904 99 -> Plus
3L 17544461..17544617 1905..2061 100 -> Plus
3L 17545035..17545433 2356..2754 100 -> Plus
3L 17545508..17546378 2755..3622 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:58 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17530809..17531035 315..541 100 -> Plus
3L 17538662..17538744 542..624 98 -> Plus
3L 17538814..17538895 625..706 100 -> Plus
3L 17539456..17539494 707..745 100 -> Plus
3L 17530118..17530422 10..314 100 -> Plus
3L 17544677..17544970 2062..2355 100 -> Plus
3L 17539567..17539736 746..915 99 -> Plus
3L 17540691..17540838 916..1063 100 -> Plus
3L 17540902..17541026 1064..1188 100 -> Plus
3L 17541301..17541403 1189..1291 100 -> Plus
3L 17543505..17543612 1292..1399 100 -> Plus
3L 17543764..17544001 1400..1637 100 -> Plus
3L 17544060..17544184 1638..1762 99 -> Plus
3L 17544256..17544397 1763..1904 99 -> Plus
3L 17544461..17544617 1905..2061 100 -> Plus
3L 17545035..17545433 2356..2754 100 -> Plus
3L 17545508..17546378 2755..3622 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:58 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17530809..17531035 315..541 100 -> Plus
3L 17538662..17538744 542..624 98 -> Plus
3L 17538814..17538895 625..706 100 -> Plus
3L 17539456..17539494 707..745 100 -> Plus
3L 17530118..17530422 10..314 100 -> Plus
3L 17544677..17544970 2062..2355 100 -> Plus
3L 17539567..17539736 746..915 99 -> Plus
3L 17540691..17540838 916..1063 100 -> Plus
3L 17540902..17541026 1064..1188 100 -> Plus
3L 17541301..17541403 1189..1291 100 -> Plus
3L 17543505..17543612 1292..1399 100 -> Plus
3L 17543764..17544001 1400..1637 100 -> Plus
3L 17544060..17544184 1638..1762 99 -> Plus
3L 17544256..17544397 1763..1904 99 -> Plus
3L 17544461..17544617 1905..2061 100 -> Plus
3L 17545035..17545433 2356..2754 100 -> Plus
3L 17545508..17546378 2755..3622 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:37:40 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17523218..17523522 10..314 100 -> Plus
arm_3L 17523909..17524135 315..541 100 -> Plus
arm_3L 17531762..17531844 542..624 98 -> Plus
arm_3L 17531914..17531995 625..706 100 -> Plus
arm_3L 17532556..17532594 707..745 100 -> Plus
arm_3L 17532667..17532836 746..915 99 -> Plus
arm_3L 17533791..17533938 916..1063 100 -> Plus
arm_3L 17534002..17534126 1064..1188 100 -> Plus
arm_3L 17534401..17534503 1189..1291 100 -> Plus
arm_3L 17536605..17536712 1292..1399 100 -> Plus
arm_3L 17536864..17537101 1400..1637 100 -> Plus
arm_3L 17537160..17537284 1638..1762 99 -> Plus
arm_3L 17537356..17537497 1763..1904 99 -> Plus
arm_3L 17537561..17537717 1905..2061 100 -> Plus
arm_3L 17537777..17538070 2062..2355 100 -> Plus
arm_3L 17538135..17538533 2356..2754 100 -> Plus
arm_3L 17538608..17539478 2755..3622 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:06 Download gff for SD04682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17531762..17531844 542..624 98 -> Plus
3L 17537160..17537284 1638..1762 99 -> Plus
3L 17531914..17531995 625..706 100 -> Plus
3L 17532556..17532594 707..745 100 -> Plus
3L 17536864..17537101 1400..1637 100 -> Plus
3L 17532667..17532836 746..915 99 -> Plus
3L 17533791..17533938 916..1063 100 -> Plus
3L 17534002..17534126 1064..1188 100 -> Plus
3L 17534401..17534503 1189..1291 100 -> Plus
3L 17536605..17536712 1292..1399 100 -> Plus
3L 17523218..17523522 10..314 100 -> Plus
3L 17523909..17524135 315..541 100 -> Plus
3L 17537356..17537497 1763..1904 99 -> Plus
3L 17537561..17537717 1905..2061 100 -> Plus
3L 17537777..17538070 2062..2355 100 -> Plus
3L 17538135..17538533 2356..2754 100 -> Plus
3L 17538608..17539478 2755..3622 98   Plus

SD04682.pep Sequence

Translation from 352 to 2856

> SD04682.pep
MSARSSGLVAAAALPVPSSSSSVAGGDVPRPPPRRRAASVAGQQQTRQEF
GNGYTPRRSLAAVNDSGDSCHLRIVVLTGQSLAKKDIFGASDPYVRIDLN
TINGDINIDSVLTKTKKKTLNPTWNEEFIFRVKPSEHKLVFQVFDENRLT
RDDFLGMVELTLVNLPTEQEGRTIGEQSYTLRPRRSVGAKSRIKGTLRIY
HAFIRETREQSEPSSGNSDGEWEHVEATNAGETSAQPHPFPTGGHDALPA
GWEERQDANGRTYYVNHTARTTQWDRPTVLNSHSSQSTDDQLASDFQRRF
HISVDDTESGRSANEDTDHTDSHNPSDISAPSTRRNSEEDNAAVPPMEQN
TGGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRASPMPNQTR
RVEDDLGPLPEGWEERVHTDGRVFYIDHNTRTTQWEDPRLSNPNIAGQAV
PYSRDYKQKYEYFKSHIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTKT
DLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNY
TLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQ
KPIDLKDMESVDTEYYNSLMWIKENDPRILELTFCLDEDVFGQKSQHELK
PGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIK
IFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFS
NEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNFPRAHT
CFNRLDLPPYEGYLQLKDKLIKAIEGSQGFAGVD*

SD04682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10539-PA 1026 GF10539-PA 506..1026 314..834 2826 98.3 Plus
Dana\GF10539-PA 1026 GF10539-PA 34..311 37..314 1368 92.4 Plus
Dana\GF14597-PA 963 GF14597-PA 411..961 248..831 1235 43 Plus
Dana\GF22530-PA 436 GF22530-PA 50..434 451..831 989 49.2 Plus
Dana\GF11657-PA 1047 GF11657-PA 663..1045 452..831 979 50 Plus
Dana\GF21923-PA 5255 GF21923-PA 4874..5252 455..830 811 43.7 Plus
Dana\GF11657-PA 1047 GF11657-PA 15..198 72..277 191 29 Plus
Dana\GF11657-PA 1047 GF11657-PA 508..588 358..441 180 42.9 Plus
Dana\GF14597-PA 963 GF14597-PA 367..440 346..438 168 36.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13624-PA 1014 GG13624-PA 493..1014 313..834 2875 99.6 Plus
Dere\GG13624-PA 1014 GG13624-PA 1..385 1..385 1477 81.4 Plus
Dere\GG24825-PA 948 GG24825-PA 396..946 248..831 1242 42.9 Plus
Dere\GG18320-PA 435 GG18320-PA 49..433 451..831 997 49.5 Plus
Dere\GG21804-PA 1058 GG21804-PA 674..1056 452..831 982 50 Plus
Dere\GG17901-PA 5136 GG17901-PA 4755..5133 455..830 807 43.5 Plus
Dere\GG21804-PA 1058 GG21804-PA 15..198 72..277 194 29 Plus
Dere\GG21804-PA 1058 GG21804-PA 513..593 358..441 180 44 Plus
Dere\GG24825-PA 948 GG24825-PA 352..425 346..438 168 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16118-PA 1042 GH16118-PA 518..1042 309..834 2802 96.8 Plus
Dgri\GH16118-PA 1042 GH16118-PA 1..360 1..329 1259 74 Plus
Dgri\GH10870-PA 965 GH10870-PA 413..963 248..831 1239 42.8 Plus
Dgri\GH25213-PA 926 GH25213-PA 379..924 246..831 1204 42.3 Plus
Dgri\GH12327-PA 414 GH12327-PA 15..412 438..831 996 48.4 Plus
Dgri\GH20075-PA 1091 GH20075-PA 707..1089 452..831 961 49.7 Plus
Dgri\GH20075-PA 1091 GH20075-PA 15..199 72..277 207 29 Plus
Dgri\GH20075-PA 1091 GH20075-PA 538..618 358..441 176 42.9 Plus
Dgri\GH10870-PA 965 GH10870-PA 372..442 349..438 161 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd4-PK 834 CG42279-PK 1..834 1..834 4449 100 Plus
Nedd4-PE 793 CG7555-PD 26..793 64..834 4106 99.5 Plus
Nedd4-PG 931 CG42279-PG 1..931 1..834 3768 80.6 Plus
Nedd4-PL 1005 CG42279-PL 423..1005 244..834 2839 90.4 Plus
Nedd4-PJ 1007 CG42279-PJ 425..1007 244..834 2839 90.4 Plus
Nedd4-PH 994 CG42279-PH 412..994 244..834 2839 90.4 Plus
Nedd4-PF 956 CG7555-PB 374..956 244..834 2839 90.4 Plus
Nedd4-PM 999 CG42279-PM 422..999 244..834 2830 90.9 Plus
Nedd4-PI 983 CG42279-PI 457..983 308..834 2825 99.1 Plus
Nedd4-PJ 1007 CG42279-PJ 1..352 1..353 1635 90.4 Plus
Nedd4-PH 994 CG42279-PH 1..352 1..353 1635 90.4 Plus
Nedd4-PI 983 CG42279-PI 1..352 1..353 1635 90.4 Plus
Nedd4-PM 999 CG42279-PM 1..349 1..353 1602 89.3 Plus
Nedd4-PL 1005 CG42279-PL 1..350 1..353 1595 89.4 Plus
Nedd4-PF 956 CG7555-PB 26..314 64..353 1325 88.4 Plus
Su(dx)-PF 949 CG4244-PF 363..946 246..830 1243 42.5 Plus
Su(dx)-PE 949 CG4244-PE 363..946 246..830 1243 42.5 Plus
Su(dx)-PA 949 CG4244-PA 363..946 246..830 1243 42.5 Plus
Su(dx)-PB 949 CG4244-PB 363..946 246..830 1243 42.5 Plus
Su(dx)-PC 949 CG4244-PC 363..946 246..830 1243 42.5 Plus
CG42797-PE 1423 CG42797-PE 797..1420 248..830 996 37.7 Plus
CG42797-PD 1426 CG42797-PD 800..1423 248..830 996 37.7 Plus
CG42797-PF 434 CG42797-PF 48..431 451..830 986 49.6 Plus
CG42797-PC 436 CG42797-PC 50..433 451..830 986 49.6 Plus
Smurf-PB 1061 CG4943-PB 562..1059 357..831 973 42.5 Plus
Smurf-PA 1061 CG4943-PA 562..1059 357..831 973 42.5 Plus
CG8184-PG 5101 CG8184-PG 4720..5098 455..830 771 43.5 Plus
CG8184-PE 5116 CG8184-PE 4735..5113 455..830 771 43.5 Plus
CG8184-PF 5127 CG8184-PF 4746..5124 455..830 771 43.5 Plus
CG8184-PC 5145 CG8184-PC 4764..5142 455..830 771 43.5 Plus
CG8184-PB 5146 CG8184-PB 4765..5143 455..830 771 43.5 Plus
CG8184-PD 5150 CG8184-PD 4769..5147 455..830 771 43.5 Plus
CG8184-PH 5151 CG8184-PH 4770..5148 455..830 771 43.5 Plus
CG4238-PJ 928 CG4238-PJ 538..928 453..833 533 35.4 Plus
CG4238-PG 928 CG4238-PG 538..928 453..833 533 35.4 Plus
CG4238-PE 928 CG4238-PE 538..928 453..833 533 35.4 Plus
CG4238-PH 962 CG4238-PH 572..962 453..833 533 35.4 Plus
CG4238-PF 968 CG4238-PF 578..968 453..833 533 35.4 Plus
CG4238-PI 977 CG4238-PI 587..977 453..833 533 35.4 Plus
CG4238-PD 977 CG4238-PD 587..977 453..833 533 35.4 Plus
Herc4-PA 1058 CG9153-PA 713..1056 479..831 464 31.8 Plus
Herc4-PB 1058 CG9153-PB 713..1056 479..831 464 31.8 Plus
Herc4-PC 1062 CG9153-PC 717..1060 479..831 464 31.8 Plus
CG3356-PA 1122 CG3356-PA 766..1119 479..830 458 31.5 Plus
Ube3a-PA 973 CG6190-PA 591..970 454..830 433 29.4 Plus
CG5087-PB 1077 CG5087-PB 688..1074 474..830 412 31.4 Plus
CG5087-PA 1078 CG5087-PA 689..1075 474..830 412 31.4 Plus
ctrip-PM 2708 CG42574-PM 2409..2705 569..830 293 29.3 Plus
ctrip-PI 2736 CG42574-PI 2437..2733 569..830 293 29.3 Plus
ctrip-PH 2737 CG42574-PH 2438..2734 569..830 293 29.3 Plus
ctrip-PC 2737 CG42574-PC 2438..2734 569..830 293 29.3 Plus
ctrip-PL 2901 CG42574-PL 2602..2898 569..830 293 29.3 Plus
ctrip-PJ 2929 CG42574-PJ 2630..2926 569..830 293 29.3 Plus
ctrip-PE 2930 CG42574-PE 2631..2927 569..830 293 29.3 Plus
ctrip-PK 3111 CG42574-PK 2812..3108 569..830 293 29.3 Plus
ctrip-PF 3139 CG42574-PF 2840..3136 569..830 293 29.3 Plus
ctrip-PA 3140 CG17735-PB 2841..3137 569..830 293 29.3 Plus
Smurf-PB 1061 CG4943-PB 15..198 72..277 195 29 Plus
Smurf-PA 1061 CG4943-PA 15..198 72..277 195 29 Plus
Su(dx)-PF 949 CG4244-PF 38..464 61..473 190 22.9 Plus
Su(dx)-PE 949 CG4244-PE 38..464 61..473 190 22.9 Plus
Su(dx)-PA 949 CG4244-PA 38..464 61..473 190 22.9 Plus
Su(dx)-PB 949 CG4244-PB 38..464 61..473 190 22.9 Plus
Su(dx)-PC 949 CG4244-PC 38..464 61..473 190 22.9 Plus
Smurf-PB 1061 CG4943-PB 515..595 358..441 187 44 Plus
Smurf-PA 1061 CG4943-PA 515..595 358..441 187 44 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12384-PA 988 GI12384-PA 469..988 314..834 2759 96 Plus
Dmoj\GI12384-PA 988 GI12384-PA 19..302 26..311 1302 89.5 Plus
Dmoj\GI18245-PA 961 GI18245-PA 359..959 227..831 1249 41.6 Plus
Dmoj\GI18790-PA 1087 GI18790-PA 592..1085 358..831 1011 42.8 Plus
Dmoj\GI15851-PA 434 GI15851-PA 48..432 451..831 993 49.2 Plus
Dmoj\GI16351-PA 5448 GI16351-PA 5067..5445 455..830 811 43.7 Plus
Dmoj\GI18790-PA 1087 GI18790-PA 15..201 72..279 192 29.2 Plus
Dmoj\GI18790-PA 1087 GI18790-PA 544..624 358..441 175 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11879-PA 1027 GL11879-PA 507..1027 314..834 2825 97.7 Plus
Dper\GL11879-PA 1027 GL11879-PA 1..340 1..333 1391 85.3 Plus
Dper\GL15308-PA 883 GL15308-PA 383..881 346..831 1111 44.2 Plus
Dper\GL16369-PA 394 GL16369-PA 8..392 451..831 991 49.2 Plus
Dper\GL16786-PA 367 GL16786-PA 10..365 479..831 937 52.9 Plus
Dper\GL19671-PA 972 GL19671-PA 578..972 444..833 547 35.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16742-PA 1027 GA16742-PA 507..1027 314..834 2826 97.7 Plus
Dpse\GA16742-PA 1027 GA16742-PA 1..340 1..333 1390 85.3 Plus
Dpse\GA18056-PA 976 GA18056-PA 384..974 236..831 1239 42.1 Plus
Dpse\GA22352-PA 414 GA22352-PA 28..412 451..831 994 49.2 Plus
Dpse\GA18543-PA 1077 GA18543-PA 693..1075 452..831 972 50.3 Plus
Dpse\GA22604-PA 5496 GA22604-PA 5115..5493 455..830 788 42.9 Plus
Dpse\GA18543-PA 1077 GA18543-PA 13..196 72..277 188 26.9 Plus
Dpse\GA18543-PA 1077 GA18543-PA 529..609 358..441 172 42.4 Plus
Dpse\GA18056-PA 976 GA18056-PA 381..491 346..473 167 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25709-PA 1013 GM25709-PA 490..1013 312..834 2851 99.2 Plus
Dsec\GM25709-PA 1013 GM25709-PA 1..363 1..365 1490 86.3 Plus
Dsec\GM16849-PA 949 GM16849-PA 397..947 248..831 1243 42.9 Plus
Dsec\GM11381-PA 437 GM11381-PA 51..435 451..831 993 49.5 Plus
Dsec\GM21807-PA 1060 GM21807-PA 676..1058 452..831 978 50 Plus
Dsec\GM22568-PA 5119 GM22568-PA 4738..5116 455..830 805 43.5 Plus
Dsec\GM21807-PA 1060 GM21807-PA 15..198 72..277 194 29 Plus
Dsec\GM21807-PA 1060 GM21807-PA 515..595 358..441 181 44 Plus
Dsec\GM16849-PA 949 GM16849-PA 353..426 346..438 168 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14716-PA 700 GD14716-PA 177..700 312..834 2841 99.4 Plus
Dsim\GD23128-PA 949 GD23128-PA 397..947 248..831 1243 42.9 Plus
Dsim\GD16957-PA 437 GD16957-PA 51..435 451..831 985 49.2 Plus
Dsim\GD11296-PA 1060 GD11296-PA 676..1058 452..831 979 50 Plus
Dsim\GD14715-PA 249 GD14715-PA 1..246 1..221 855 77.6 Plus
Dsim\GD11296-PA 1060 GD11296-PA 15..198 72..277 194 29 Plus
Dsim\GD11296-PA 1060 GD11296-PA 515..595 358..441 181 44 Plus
Dsim\GD23128-PA 949 GD23128-PA 353..426 346..438 168 36.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12273-PA 962 GJ12273-PA 424..962 291..834 2804 94.1 Plus
Dvir\GJ12273-PA 962 GJ12273-PA 39..302 47..311 1261 89.4 Plus
Dvir\GJ22930-PA 962 GJ22930-PA 410..960 248..831 1253 43.1 Plus
Dvir\GJ19015-PA 434 GJ19015-PA 48..432 451..831 993 49.2 Plus
Dvir\GJ21820-PA 1065 GJ21820-PA 571..1063 358..831 992 42.7 Plus
Dvir\GJ16898-PA 1587 GJ16898-PA 1206..1584 455..830 805 43.7 Plus
Dvir\GJ21820-PA 1065 GJ21820-PA 15..259 72..339 192 26.9 Plus
Dvir\GJ21820-PA 1065 GJ21820-PA 523..603 358..441 175 42.9 Plus
Dvir\GJ22930-PA 962 GJ22930-PA 366..439 346..438 164 36.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17749-PA 1027 GK17749-PA 501..1027 308..834 2841 97.2 Plus
Dwil\GK17749-PA 1027 GK17749-PA 1..334 1..314 1360 81.8 Plus
Dwil\GK15043-PA 970 GK15043-PA 418..968 248..831 1238 42.6 Plus
Dwil\GK25351-PA 413 GK25351-PA 28..411 451..831 981 49.2 Plus
Dwil\GK10721-PA 1099 GK10721-PA 715..1097 452..831 974 49.7 Plus
Dwil\GK19776-PA 5419 GK19776-PA 5038..5416 455..830 806 43.5 Plus
Dwil\GK10721-PA 1099 GK10721-PA 15..199 72..277 180 28.1 Plus
Dwil\GK10721-PA 1099 GK10721-PA 548..628 358..441 179 43.5 Plus
Dwil\GK15043-PA 970 GK15043-PA 374..447 346..438 166 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19920-PA 1010 GE19920-PA 489..1010 313..834 2877 99.6 Plus
Dyak\GE19920-PA 1010 GE19920-PA 1..365 1..370 1484 84.9 Plus
Dyak\GE17900-PA 950 GE17900-PA 398..948 248..831 1243 42.9 Plus
Dyak\GE17803-PA 437 GE17803-PA 51..435 451..831 996 49.5 Plus
Dyak\GE11881-PA 1058 GE11881-PA 674..1056 452..831 982 50 Plus
Dyak\GE17209-PA 5075 GE17209-PA 4694..5072 455..830 808 43.5 Plus
Dyak\GE11881-PA 1058 GE11881-PA 15..198 72..277 194 29 Plus
Dyak\GE11881-PA 1058 GE11881-PA 513..593 358..441 180 44 Plus
Dyak\GE17900-PA 950 GE17900-PA 354..427 346..438 168 36.6 Plus

SD04682.hyp Sequence

Translation from 352 to 2856

> SD04682.hyp
MSARSSGLVAAAALPVPSSSSSVAGGDVPRPPPRRRAASVAGQQQTRQEF
GNGYTPRRSLAAVNDSGDSCHLRIVVLTGQSLAKKDIFGASDPYVRIDLN
TINGDINIDSVLTKTKKKTLNPTWNEEFIFRVKPSEHKLVFQVFDENRLT
RDDFLGMVELTLVNLPTEQEGRTIGEQSYTLRPRRSVGAKSRIKGTLRIY
HAFIRETREQSEPSSGNSDGEWEHVEATNAGETSAQPHPFPTGGHDALPA
GWEERQDANGRTYYVNHTARTTQWDRPTVLNSHSSQSTDDQLASDFQRRF
HISVDDTESGRSANEDTDHTDSHNPSDISAPSTRRNSEEDNAAVPPMEQN
TGGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRASPMPNQTR
RVEDDLGPLPEGWEERVHTDGRVFYIDHNTRTTQWEDPRLSNPNIAGQAV
PYSRDYKQKYEYFKSHIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTKT
DLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNY
TLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQ
KPIDLKDMESVDTEYYNSLMWIKENDPRILELTFCLDEDVFGQKSQHELK
PGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIK
IFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFS
NEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNFPRAHT
CFNRLDLPPYEGYLQLKDKLIKAIEGSQGFAGVD*

SD04682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd4-PK 834 CG42279-PK 1..834 1..834 4449 100 Plus
Nedd4-PE 793 CG7555-PD 26..793 64..834 4106 99.5 Plus
Nedd4-PG 931 CG42279-PG 1..931 1..834 3768 80.6 Plus
Nedd4-PL 1005 CG42279-PL 423..1005 244..834 2839 90.4 Plus
Nedd4-PJ 1007 CG42279-PJ 425..1007 244..834 2839 90.4 Plus
Nedd4-PL 1005 CG42279-PL 1..350 1..353 1595 89.4 Plus