Clone SD04693 Report

Search the DGRC for SD04693

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:93
Vector:pOT2
Associated Gene/TranscriptSwip-1-RA
Protein status:SD04693.pep: gold
Preliminary Size:1702
Sequenced Size:1634

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10641 2001-01-01 Release 2 assignment
CG10641 2002-03-20 Blastp of sequenced clone
CG10641 2003-01-01 Sim4 clustering to Release 3
CG10641 2008-04-29 Release 5.5 accounting
CG10641 2008-08-15 Release 5.9 accounting
CG10641 2008-12-18 5.12 accounting

Clone Sequence Records

SD04693.complete Sequence

1634 bp (1634 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094963

> SD04693.complete
AAGATTCGGAAGTCGCGGCGGTCGAAGCGGAACACCAGTTGTCCAATAAG
AAAGTCAACTTGCAGCTAAAAAAAAAAGACCGGCAATTCAAACGCACCTT
GCAACTGTTTTTTTCAAAGCCAAAAAAGGACTCAGGGCCACTCCCCACGA
CAAAAGCTTACGTGCAACGAGTCCGTGTGTGTTTTCCTGGCGCATCGCCG
CATTTGTGTGTGTATCCGGACATCTCTTTTACGGTCCTTTTTGCGTGGGT
GTGCCAAAAGGAAGAGAGAGTGAGAAGGCAGCAGAAAAGGGCAGAAAGGG
AAATTCCAGCACACTAAAAAGCGAGTCAACAAGGAGCGACACAATGTCCG
TTTCCTCGAACGCCTCATCCGCCTCCAACAAGGACAGCGTGGACAGCCCC
AGCAGCACCACCAACACGGACAGCTCCGAGCTGACGCACATCCTCAATCG
GCGCCAGGAGATCATGGAGTCCCAGGAGGCGGGCATCGAGGTGCGTCGCA
CCTACAAAGTGGTCAACGTCTACACCGACTTCCCCGAGTTCTCCCGTAAC
CAGATCAAGGACTACCAGAAGACCTTCAATACATACGATACGGCTCGTGA
TGGCTTCTTGGACCTGCAGGAGCTGAAGTTCATGATGGAGAAGCTGGGCG
CTCCGCAAACCCATCTGGGACTCAAGCAGATGATTGCCGAGGTGGACGAG
GATAACGATGGCAAGATTTCATTCCGAGAGTTCTTGCTGATCTTCAGGAA
GGCCCAGGCCGGGGAACTGGACTCCGATTCTGGGCTGAATCAGCTGGCCC
GCCTCACGGAGGTCGATGTGGAGCAGGTGGGAGTGAGCGGAGCCAAGAAC
TTCTTCGAGGCGAAAATTGAGCAACAGCTGCGGACGAACAAGTTCCACGA
CGAGATTCGGGCGGAGCAGGAGGAGCGCCGGCGAGAGGAGGAGGAGCGGG
CCCAGCGGCGTCAGCAGTTCCAGCAGCGGGCAGCGATCTTCCAGTAGAGG
ACTTAGGTTCGCCCTTAGTCTAGCGAGTAATTATCTGGCGTAGGTTAATC
GAATGTGGAACTAATCCCGGGAGAAGAGGATACGCTTCGTACAAGCATTT
TTCAAGCATCACATACTCTAATTATATTCATACTTATCGCCCCATACATA
TAAAAACTCGATTTGCTGGCAAAAACATCTTGGGAATTGAATGTTATCTT
TGACTAATGTTTGTTTTGGATCTTTGAAGTACCCATCACAACTTATCAAG
TAACAAAATATAACGTTCAATTTCTAATATATATTTTTTTAAAACCAACC
AAACTGAGCCACTCTAGCCAGGGACATATGCATACATACGTACATTAATA
ACGATCATACCAAAAGCGTATTTATAGTTAACCTTTAGTTAAGTTTAAAA
TGTTTTAGATTAAGAACTACTTTATTGTTTGGTGTTGCGCAAAATTTCAT
TGTTGAATTACGTTTATCCTTGAGGGTTCTCCAAAATGTATGCTTTTTAC
TTTATGATTTTGTACTTTTAGTGCCATTTTTATGTTCTTCGTTTTAGTTT
TGTTAAAAATAAAATTGATAGTTATATTAAGCAAATAAACTTGTGAAATT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD04693.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10641-RA 1855 CG10641-RA 22..1627 1..1603 7850 99.4 Plus
CG10431-RA 3483 CG10431-RA 3042..3483 1603..1162 2210 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18976440..18977458 1601..583 5095 100 Minus
chr2L 23010047 chr2L 18985365..18985947 582..1 2865 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18977749..18978769 1603..583 5105 100 Minus
2L 23513712 2L 18986672..18987256 582..1 2725 98.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18977749..18978769 1603..583 5105 100 Minus
2L 23513712 2L 18986672..18987256 582..1 2745 98.4 Minus
Blast to na_te.dros performed 2019-03-15 16:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6023..6331 1580..1272 134 55.1 Minus

SD04693.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:50:20 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18976440..18977458 583..1601 100 <- Minus
chr2L 18985365..18985947 1..582 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:22 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 1..654 344..997 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:25:26 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 1..654 344..997 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:11:17 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 1..654 344..997 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:54 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 1..654 344..997 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:32 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 1..654 344..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:52:00 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 21..1624 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:25:26 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 21..1624 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:17 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 25..1628 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:54 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 21..1624 1..1601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:32 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 25..1628 1..1601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:20 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18977751..18978769 583..1601 100 <- Minus
2L 18986672..18987256 1..582 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:20 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18977751..18978769 583..1601 100 <- Minus
2L 18986672..18987256 1..582 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:20 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18977751..18978769 583..1601 100 <- Minus
2L 18986672..18987256 1..582 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:17 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18977751..18978769 583..1601 100 <- Minus
arm_2L 18986672..18987256 1..582 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:02 Download gff for SD04693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18977751..18978769 583..1601 100 <- Minus
2L 18986672..18987256 1..582 98   Minus

SD04693.pep Sequence

Translation from 343 to 996

> SD04693.pep
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQ*

SD04693.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14643-PA 219 GF14643-PA 15..190 15..188 838 90.9 Plus
Dana\GF17829-PA 379 GF17829-PA 160..375 6..217 212 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21667-PA 217 GG21667-PA 1..217 1..217 1137 100 Plus
Dere\GG16887-PA 368 GG16887-PA 205..362 66..217 195 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11598-PA 219 GH11598-PA 28..219 26..217 756 87.5 Plus
Dgri\GH18108-PA 168 GH18108-PA 33..146 70..178 179 36 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-PB 217 CG10641-PB 1..217 1..217 1087 100 Plus
Swip-1-PA 217 CG10641-PA 1..217 1..217 1087 100 Plus
CG14861-PA 364 CG14861-PA 201..358 66..217 177 35.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17167-PA 218 GI17167-PA 30..189 29..188 786 91.9 Plus
Dmoj\GI24609-PA 211 GI24609-PA 72..195 66..184 196 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19621-PA 222 GL19621-PA 31..222 26..217 807 91.7 Plus
Dper\GL22131-PA 367 GL22131-PA 196..318 59..175 189 39 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10462-PA 222 GA10462-PA 31..222 26..217 807 91.7 Plus
Dpse\GA13302-PA 367 GA13302-PA 196..318 59..175 189 39 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17046-PA 217 GM17046-PA 1..217 1..217 1137 100 Plus
Dsec\GM24196-PA 364 GM24196-PA 200..358 66..217 188 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21793-PA 217 GD21793-PA 1..217 1..217 1137 100 Plus
Dsim\GD18987-PA 369 GD18987-PA 205..363 66..217 188 35.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17672-PA 218 GJ17672-PA 30..189 29..188 785 91.2 Plus
Dvir\GJ22558-PA 290 GJ22558-PA 151..268 66..178 147 41.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24329-PA 218 GK24329-PA 1..189 1..188 804 85.2 Plus
Dwil\GK12092-PA 321 GK12092-PA 154..309 59..216 184 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12688-PA 217 GE12688-PA 1..217 1..217 1125 99.1 Plus
Dyak\GE24267-PA 370 GE24267-PA 199..364 59..217 202 37.4 Plus

SD04693.hyp Sequence

Translation from 343 to 996

> SD04693.hyp
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQ*

SD04693.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-PB 217 CG10641-PB 1..217 1..217 1087 100 Plus
Swip-1-PA 217 CG10641-PA 1..217 1..217 1087 100 Plus
CG14861-PA 364 CG14861-PA 201..358 66..217 177 35.2 Plus