BDGP Sequence Production Resources |
Search the DGRC for SD05004
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 50 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | 128up-RA |
Protein status: | SD05004.pep: gold |
Preliminary Size: | 1418 |
Sequenced Size: | 1321 |
Gene | Date | Evidence |
---|---|---|
CG8340 | 2001-01-01 | Release 2 assignment |
CG8340 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8340 | 2003-01-14 | Blastp of sequenced clone |
128up | 2008-04-29 | Release 5.5 accounting |
128up | 2008-08-15 | Release 5.9 accounting |
128up | 2008-12-18 | 5.12 accounting |
1321 bp (1321 high quality bases) assembled on 2003-01-14
GenBank Submission: AY069810
> SD05004.complete CCACGCGAGAGTTTTATATATTTTATTTTTACATGCATATTTGTTGATAA CTGGGGTTTTCTGTGAACCGCGTTTAACTCTCAGCCAGCCATGAGCACAA TATTGGAGAAAATCTCGGCCATCGAGTCGGAGATGGCCCGAACCCAAAAG AACAAGGCCACCTCGGCCCATTTGGGTCTACTGAAGGCGAAGCTGGCTAA GCTGCGACGCGAACTGATTTCCCCCAAAGGAGGCGGCGGCGGAACCGGCG AAGCTGGCTTCGAGGTGGCCAAGACTGGAGATGCCCGGGTGGGATTCGTA GGGTTTCCTTCTGTGGGTAAATCCACACTGCTCTCCAACTTGGCTGGCGT TTACTCCGAGGTGGCGGCATACGAATTCACAACGTTGACCACTGTGCCGG GATGCATTAAGTACAAGGGCGCTAAGATCCAGCTGCTGGACTTGCCCGGT ATCATTGAGGGCGCTAAGGATGGCAAGGGTCGAGGTCGTCAGGTGATTGC TGTCGCTCGCACCTGTAACCTCATTTTCATGGTGCTGGATTGCCTGAAAC CGCTTGGCCACAAGAAACTCCTCGAGCATGAATTGGAGGGCTTCGGCATC CGGCTTAACAAGAAACCACCAAATATCTACTACAAGCGGAAGGACAAGGG TGGCATCAATCTGAACAGCATGGTTCCGCAGTCCGAGTTGGACACGGATC TGGTGAAGACCATTCTATCCGAGTACAAGATCCACAATGCGGACATCACC CTGAGATACGACGCCACTAGTGACGACCTCATTGACGTTATCGAGGGCAA CCGCATCTACATACCCTGCATATATCTGCTGAACAAGATCGATCAGATCT CCATCGAGGAGCTGGACGTCATCTACAAGATCCCGCATTGCGTGCCCATC TCGGCCCATCACCACTGGAACTTTGACGATCTGCTGGAGCTGATGTGGGA ATACCTGCGACTGCAGCGCATCTACACCAAGCCCAAGGGCCAGCTGCCCG ATTACAACTCGCCCGTGGTACTCCACAACGAGCGCACCAGCATTGAGGAT TTCTGCAACAAGCTGCATCGCTCCATTGCCAAGGAATTTAAATATGCGCT GGTTTGGGGCTCATCTGTGAAGCATCAGCCACAGAAGGTGGGCATCGAAC ACGTTCTCAACGACGAGGATGTGGTCCAGATTGTGAAGAAGGTTTAGACT CTGTGCAACGATAACACTTTGATTACTTGATGGCATTTTTTATTCGAAAA TAAAAAACGAATGTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7924991..7925833 | 252..1094 | 4215 | 100 | Plus |
chr2R | 21145070 | chr2R | 7925899..7926073 | 1095..1269 | 860 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 7924555..7924686 | 1..132 | 660 | 100 | Plus |
chr2R | 21145070 | chr2R | 7924817..7924943 | 131..257 | 620 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 15471562..15471670 | 513..405 | 215 | 79.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12037769..12038611 | 252..1094 | 4215 | 100 | Plus |
2R | 25286936 | 2R | 12038677..12038852 | 1095..1270 | 880 | 100 | Plus |
2R | 25286936 | 2R | 12037333..12037464 | 1..132 | 660 | 100 | Plus |
2R | 25286936 | 2R | 12037595..12037717 | 131..253 | 615 | 100 | Plus |
3R | 32079331 | 3R | 19647729..19647837 | 513..405 | 215 | 79.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12038968..12039810 | 252..1094 | 4215 | 100 | Plus |
2R | 25260384 | 2R | 12039876..12040051 | 1095..1270 | 880 | 100 | Plus |
2R | 25260384 | 2R | 12038532..12038663 | 1..132 | 660 | 100 | Plus |
2R | 25260384 | 2R | 12038794..12038916 | 131..253 | 615 | 100 | Plus |
3R | 31820162 | 3R | 19388560..19388668 | 513..405 | 215 | 79.8 | Minus |
3R | 31820162 | 3R | 19388206..19388241 | 867..832 | 165 | 97.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 909..820 | 128 | 61.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7924555..7924686 | 1..132 | 100 | -> | Plus |
chr2R | 7924819..7924939 | 133..253 | 100 | -> | Plus |
chr2R | 7924993..7925833 | 254..1094 | 100 | -> | Plus |
chr2R | 7925899..7926073 | 1095..1269 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 1..1107 | 91..1197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 1..1107 | 91..1197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 1..1107 | 91..1197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 1..1107 | 91..1197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 1..1107 | 91..1197 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 28..1296 | 1..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 28..1296 | 1..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 36..1304 | 1..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 28..1296 | 1..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
128up-RA | 36..1304 | 1..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12037333..12037464 | 1..132 | 100 | -> | Plus |
2R | 12037597..12037717 | 133..253 | 100 | -> | Plus |
2R | 12037771..12038611 | 254..1094 | 100 | -> | Plus |
2R | 12038677..12038851 | 1095..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12037333..12037464 | 1..132 | 100 | -> | Plus |
2R | 12037597..12037717 | 133..253 | 100 | -> | Plus |
2R | 12037771..12038611 | 254..1094 | 100 | -> | Plus |
2R | 12038677..12038851 | 1095..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12037333..12037464 | 1..132 | 100 | -> | Plus |
2R | 12037597..12037717 | 133..253 | 100 | -> | Plus |
2R | 12037771..12038611 | 254..1094 | 100 | -> | Plus |
2R | 12038677..12038851 | 1095..1269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7924838..7924969 | 1..132 | 100 | -> | Plus |
arm_2R | 7925102..7925222 | 133..253 | 100 | -> | Plus |
arm_2R | 7926182..7926356 | 1095..1269 | 100 | Plus | |
arm_2R | 7925276..7926116 | 254..1094 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12039876..12040050 | 1095..1269 | 100 | Plus | |
2R | 12038970..12039810 | 254..1094 | 100 | -> | Plus |
2R | 12038532..12038663 | 1..132 | 100 | -> | Plus |
2R | 12038796..12038916 | 133..253 | 100 | -> | Plus |
Translation from 90 to 1196
> SD05004.pep MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV GIEHVLNDEDVVQIVKKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12286-PA | 368 | GF12286-PA | 1..368 | 1..368 | 1934 | 99.2 | Plus |
Dana\GF17362-PA | 363 | GF17362-PA | 3..363 | 4..367 | 1113 | 57.7 | Plus |
Dana\GF14685-PA | 376 | GF14685-PA | 205..376 | 65..219 | 197 | 33.9 | Plus |
Dana\GF15477-PA | 383 | GF15477-PA | 158..293 | 65..188 | 179 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20239-PA | 368 | GG20239-PA | 1..368 | 1..368 | 1944 | 99.7 | Plus |
Dere\GG15886-PA | 363 | GG15886-PA | 3..363 | 4..367 | 1102 | 56.9 | Plus |
Dere\GG23451-PA | 381 | GG23451-PA | 206..320 | 65..176 | 200 | 40.9 | Plus |
Dere\GG21611-PA | 383 | GG21611-PA | 158..293 | 65..188 | 170 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20854-PA | 368 | GH20854-PA | 1..368 | 1..368 | 1916 | 98.1 | Plus |
Dgri\GH23383-PA | 363 | GH23383-PA | 3..363 | 4..367 | 1090 | 56.6 | Plus |
Dgri\GH10882-PA | 375 | GH10882-PA | 198..366 | 65..215 | 210 | 34.3 | Plus |
Dgri\GH13046-PA | 383 | GH13046-PA | 158..243 | 65..148 | 166 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
128up-PA | 368 | CG8340-PA | 1..368 | 1..368 | 1910 | 100 | Plus |
CG6195-PA | 363 | CG6195-PA | 3..363 | 4..367 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 148..329 | 29..185 | 202 | 31.3 | Plus |
CG10628-PA | 383 | CG10628-PA | 130..293 | 47..188 | 179 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20960-PA | 368 | GI20960-PA | 1..368 | 1..368 | 1924 | 98.6 | Plus |
Dmoj\GI10336-PA | 367 | GI10336-PA | 3..367 | 4..367 | 1097 | 56.4 | Plus |
Dmoj\GI12998-PA | 372 | GI12998-PA | 198..321 | 65..185 | 214 | 40.8 | Plus |
Dmoj\GI18192-PA | 384 | GI18192-PA | 159..294 | 65..188 | 172 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17092-PA | 368 | GL17092-PA | 1..368 | 1..368 | 1927 | 98.9 | Plus |
Dper\GL11955-PA | 343 | GL11955-PA | 3..343 | 4..367 | 1036 | 54.9 | Plus |
Dper\GL11553-PA | 241 | GL11553-PA | 1..135 | 1..135 | 681 | 99.3 | Plus |
Dper\GL11553-PA | 241 | GL11553-PA | 134..223 | 213..302 | 492 | 97.8 | Plus |
Dper\GL25811-PA | 382 | GL25811-PA | 191..321 | 50..176 | 193 | 38.9 | Plus |
Dper\GL25622-PA | 383 | GL25622-PA | 158..293 | 65..188 | 172 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21003-PA | 368 | GA21003-PA | 1..368 | 1..368 | 1927 | 98.9 | Plus |
Dpse\GA19430-PA | 363 | GA19430-PA | 3..363 | 4..367 | 1096 | 56.9 | Plus |
Dpse\GA24766-PA | 150 | GA24766-PA | 1..143 | 1..143 | 705 | 97.2 | Plus |
Dpse\GA24767-PA | 102 | GA24767-PA | 13..84 | 231..302 | 408 | 98.6 | Plus |
Dpse\GA12249-PA | 382 | GA12249-PA | 191..321 | 50..176 | 193 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21327-PA | 368 | GM21327-PA | 1..368 | 1..368 | 1941 | 99.5 | Plus |
Dsec\GM26898-PA | 363 | GM26898-PA | 3..363 | 4..367 | 1095 | 56.4 | Plus |
Dsec\GM12999-PA | 381 | GM12999-PA | 206..320 | 65..176 | 202 | 40.9 | Plus |
Dsec\GM16989-PA | 383 | GM16989-PA | 158..293 | 65..188 | 178 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10834-PA | 353 | GD10834-PA | 1..353 | 1..368 | 1677 | 90.8 | Plus |
Dsim\GD20106-PA | 363 | GD20106-PA | 3..363 | 4..367 | 1095 | 56.4 | Plus |
Dsim\GD22413-PA | 381 | GD22413-PA | 206..320 | 65..176 | 200 | 40.9 | Plus |
Dsim\GD21736-PA | 383 | GD21736-PA | 158..293 | 65..188 | 177 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20681-PA | 368 | GJ20681-PA | 1..368 | 1..368 | 1935 | 98.9 | Plus |
Dvir\GJ10190-PA | 363 | GJ10190-PA | 3..363 | 4..367 | 1103 | 57.1 | Plus |
Dvir\GJ11528-PA | 376 | GJ11528-PA | 198..321 | 65..185 | 198 | 37.6 | Plus |
Dvir\GJ14682-PA | 383 | GJ14682-PA | 158..293 | 65..188 | 173 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21337-PA | 368 | GK21337-PA | 1..368 | 1..368 | 1923 | 98.1 | Plus |
Dwil\GK22817-PA | 363 | GK22817-PA | 3..363 | 4..367 | 1101 | 56.9 | Plus |
Dwil\GK24168-PA | 380 | GK24168-PA | 189..378 | 50..221 | 198 | 32.1 | Plus |
Dwil\GK15220-PA | 384 | GK15220-PA | 159..294 | 65..188 | 168 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12398-PA | 368 | GE12398-PA | 1..368 | 1..368 | 1951 | 100 | Plus |
Dyak\GE25118-PA | 363 | GE25118-PA | 3..363 | 4..367 | 1099 | 56.6 | Plus |
Dyak\GE11035-PA | 384 | GE11035-PA | 206..320 | 65..176 | 203 | 40.9 | Plus |
Dyak\GE12631-PA | 383 | GE12631-PA | 158..293 | 65..188 | 175 | 37.4 | Plus |
Translation from 90 to 1196
> SD05004.hyp MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV GIEHVLNDEDVVQIVKKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
128up-PA | 368 | CG8340-PA | 1..368 | 1..368 | 1910 | 100 | Plus |
CG6195-PA | 363 | CG6195-PA | 3..363 | 4..367 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 148..329 | 29..185 | 202 | 31.3 | Plus |
CG10628-PA | 383 | CG10628-PA | 130..293 | 47..188 | 179 | 34.5 | Plus |