Clone SD05069 Report

Search the DGRC for SD05069

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:50
Well:69
Vector:pOT2
Associated Gene/TranscriptSp7-RB
Protein status:SD05069.pep: wuzgold
Sequenced Size:1351

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Sp7-RB 2011-03-21 Manual selection by Ken Wan

Clone Sequence Records

SD05069.complete Sequence

1351 bp assembled on 2011-06-10

GenBank Submission: BT128742.1

> SD05069.complete
TACTAAAAATGGCGTGATTAACAAAAACGTGATAAGCAATAAAAAAAATA
TATCAAACGAAGTTTTTTCAGATTCCAGATTAATACACGCTTCCTTAACT
TTGTAAAGGTTGTAAAATATGATCAAGTTTTGGTTGTAGGAATCCCAACC
AGAAACAGGGACAATGTTTGTCCATATACGACTGTCAAAGTCTGCTTTCC
GTGATTCAGCAGTCTTATGTCAGCCCGGAGGACAGAACCTTTCTTCGAAA
CTCACAGTGCCTCGATGGAGTAGGTCGCCAGCCATATGTTTGCTGTACAA
GTGATCGCAGCTTTGGATCCCAGGAGGCCACCTCCGCAGCCCCTCCTCCA
ACGACTACCAGTTCAAGTTCACGAGGTCAAGACGGTCAAGCGGGTCTGGG
CAACCTGCTGCCCTCGCCACCCAAGTGCGGGCCCCACTCCTTCAGCAATA
AGGTCTATAATGGCAACGACACTGCTATTGACGAGTTCAACTGGATGGCA
CTGCTTGAGTACGTGGATAACAGGGGACGGCGGGAACTCAGTTGCGGTGG
CAGTTTGATCAACAATCGTTACGTTCTTACCGCCGCCCATTGCGTCATTG
GTGCGGTGGAAACGGAAGTAGGTCACCTAACTACCGTTCGGTTGGGGGAA
TACGATACCAGCAAGGACGTGGACTGCATAGATGACATTTGCAACCAGCC
CATCCTACAATTGGGCATCGAACAGGCCACTGTACATCCCCAATATGATC
CTGCCAACAAGAACCGCATTCACGACATTGCCTTATTGCGATTAGATCGG
CCCGTTGTGCTTAATGAGTATATTCAGCCGGTTTGTTTGCCTTTGGTAAG
CACACGAATGGCAATCAATACCGGGGAGCTCTTGGTGGTCAGCGGGTGGG
GCCGAACCACAACAGCCCGCAAGAGCACCATAAAGCAGCGATTGGATCTG
CCGGTGAATGACCACGATTACTGCGCACGAAAGTTCGCCACGAGGAATAT
CCACCTGATCAGTTCCCAGCTCTGTGTTGGCGGGGAATTCTACCGCGACA
GCTGTGATGGCGACTCCGGCGGACCGCTGATGCGAAGGGGTTTTGACCAG
GCTTGGTACCAGGAGGGCGTGGTCTCCTTTGGCAACCGCTGCGGACTAGA
GGGTTGGCCAGGTGTCTACACTCGGGTAGCCGACTACATGGACTGGATCG
TGGAGACCATTCGTCCCTGAGCAGCGGAACGAAGGCCGCTTTTGTTCTGA
TAATGTTTTAATTAAAGTCAAGTCGAGAGTGCTCTTTGGGCTGGGCGCCC
ATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

SD05069.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3589093..3589486 914..1307 1970 100 Plus
chr3R 27901430 chr3R 3588066..3588453 132..519 1940 100 Plus
chr3R 27901430 chr3R 3588695..3588981 629..915 1435 100 Plus
chr3R 27901430 chr3R 3585852..3585985 1..134 670 100 Plus
chr3R 27901430 chr3R 3588517..3588625 520..628 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7763033..7763428 914..1309 1980 100 Plus
3R 32079331 3R 7762006..7762393 132..519 1940 100 Plus
3R 32079331 3R 7762635..7762921 629..915 1435 100 Plus
3R 32079331 3R 7759792..7759925 1..134 670 100 Plus
3R 32079331 3R 7762457..7762565 520..628 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7503864..7504259 914..1309 1980 100 Plus
3R 31820162 3R 7502837..7503224 132..519 1940 100 Plus
3R 31820162 3R 7503466..7503752 629..915 1435 100 Plus
3R 31820162 3R 7500623..7500756 1..134 670 100 Plus
3R 31820162 3R 7503288..7503396 520..628 545 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:41:51 has no hits.

SD05069.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:45 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3585852..3585983 1..132 100 -> Plus
chr3R 3588067..3588453 133..519 100 -> Plus
chr3R 3588517..3588625 520..628 100 -> Plus
chr3R 3588695..3588981 629..915 100 -> Plus
chr3R 3589095..3589486 916..1307 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-10 09:12:29 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RC 89..1176 133..1220 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:54 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 89..1176 133..1220 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:09:36 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 89..1176 133..1220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-10 09:12:28 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RB 7..1313 1..1307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:54 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 7..139 1..133 99 -> Plus
Sp7-RA 678..1851 134..1307 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:36 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 7..139 1..133 99 -> Plus
Sp7-RA 678..1851 134..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:45 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7759792..7759923 1..132 100 -> Plus
3R 7762007..7762393 133..519 100 -> Plus
3R 7762457..7762565 520..628 100 -> Plus
3R 7762635..7762921 629..915 100 -> Plus
3R 7763035..7763426 916..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:45 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7759792..7759923 1..132 100 -> Plus
3R 7762007..7762393 133..519 100 -> Plus
3R 7762457..7762565 520..628 100 -> Plus
3R 7762635..7762921 629..915 100 -> Plus
3R 7763035..7763426 916..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:45 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7759792..7759923 1..132 100 -> Plus
3R 7762007..7762393 133..519 100 -> Plus
3R 7762457..7762565 520..628 100 -> Plus
3R 7762635..7762921 629..915 100 -> Plus
3R 7763035..7763426 916..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:54 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3585514..3585645 1..132 100 -> Plus
arm_3R 3587729..3588115 133..519 100 -> Plus
arm_3R 3588179..3588287 520..628 100 -> Plus
arm_3R 3588357..3588643 629..915 100 -> Plus
arm_3R 3588757..3589148 916..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:06 Download gff for SD05069.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7502838..7503224 133..519 100 -> Plus
3R 7503288..7503396 520..628 100 -> Plus
3R 7503466..7503752 629..915 100 -> Plus
3R 7503866..7504257 916..1307 100   Plus
3R 7500623..7500754 1..132 100 -> Plus

SD05069.pep Sequence

Translation from 494 to 1219

> SD05069.pep
MALLEYVDNRGRRELSCGGSLINNRYVLTAAHCVIGAVETEVGHLTTVRL
GEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRL
DRPVVLNEYIQPVCLPLVSTRMAINTGELLVVSGWGRTTTARKSTIKQRL
DLPVNDHDYCARKFATRNIHLISSQLCVGGEFYRDSCDGDSGGPLMRRGF
DQAWYQEGVVSFGNRCGLEGWPGVYTRVADYMDWIVETIRP*

SD05069.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17682-PA 394 GF17682-PA 154..394 1..241 1060 81.3 Plus
Dana\GF16188-PA 418 GF16188-PA 176..417 1..240 564 49 Plus
Dana\GF18202-PA 393 GF18202-PA 145..393 1..241 504 45 Plus
Dana\GF23198-PA 392 GF23198-PA 142..391 1..240 495 42 Plus
Dana\GF16189-PA 413 GF16189-PA 143..390 1..240 459 39 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14174-PA 391 GG14174-PA 151..391 1..241 1246 95.4 Plus
Dere\GG11948-PA 417 GG11948-PA 175..416 1..240 577 47.3 Plus
Dere\GG16913-PA 392 GG16913-PA 142..391 1..240 506 43.6 Plus
Dere\GG12275-PA 392 GG12275-PA 144..391 1..240 487 45.8 Plus
Dere\GG11949-PA 421 GG11949-PA 160..407 1..240 468 39.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18317-PA 379 GH18317-PA 141..379 1..241 910 70.1 Plus
Dgri\GH14281-PA 578 GH14281-PA 328..578 1..241 524 44.6 Plus
Dgri\GH18417-PA 435 GH18417-PA 215..434 16..240 516 46.7 Plus
Dgri\GH19111-PA 344 GH19111-PA 97..344 1..241 513 46.4 Plus
Dgri\GH17229-PA 387 GH17229-PA 139..386 1..240 449 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 151..391 1..241 1294 100 Plus
Sp7-PE 391 CG3066-PE 151..391 1..241 1294 100 Plus
Sp7-PA 391 CG3066-PA 151..391 1..241 1294 100 Plus
CG9733-PB 417 CG9733-PB 175..416 1..240 578 46.9 Plus
CG9733-PA 418 CG9733-PA 176..417 1..240 578 46.9 Plus
ea-PB 261 CG4920-PB 11..259 1..239 508 43.4 Plus
ea-PA 392 CG4920-PA 142..390 1..239 508 43.4 Plus
MP1-PA 390 CG1102-PA 142..389 1..240 493 44.4 Plus
MP1-PC 399 CG1102-PC 151..398 1..240 493 44.4 Plus
MP1-PE 400 CG1102-PE 152..399 1..240 493 44.4 Plus
CG11313-PC 367 CG11313-PC 130..367 1..241 480 43 Plus
CG11313-PD 370 CG11313-PD 130..370 1..241 467 42.4 Plus
CG9737-PA 424 CG9737-PA 164..411 1..240 453 39 Plus
SPE-PA 400 CG16705-PA 165..400 16..241 435 39 Plus
Ser7-PA 397 CG2045-PA 148..393 3..240 410 41.3 Plus
CG3505-PA 360 CG3505-PA 121..359 1..240 395 37.5 Plus
grass-PA 335 CG5896-PA 91..330 1..239 380 36.8 Plus
grass-PB 377 CG5896-PB 133..372 1..239 380 36.8 Plus
CG31220-PB 363 CG31220-PB 133..363 13..241 379 40 Plus
CG8172-PD 371 CG8172-PD 151..362 13..235 376 40.8 Plus
CG8172-PE 545 CG8172-PE 325..536 13..235 376 40.8 Plus
CG8172-PF 561 CG8172-PF 341..552 13..235 376 40.8 Plus
CG7432-PB 721 CG7432-PB 499..720 12..240 373 40.4 Plus
CG4914-PA 374 CG4914-PA 153..365 17..240 363 39 Plus
CG31219-PB 345 CG31219-PB 103..345 1..241 358 37.2 Plus
CG5909-PA 381 CG5909-PA 144..381 1..240 349 34.3 Plus
CG9372-PA 408 CG9372-PA 201..403 17..236 336 37.4 Plus
CG10232-PD 509 CG10232-PD 271..509 1..241 336 38.6 Plus
CG30087-PA 277 CG30087-PA 67..270 17..235 332 38.4 Plus
l(2)k05911-PC 639 CG31728-PC 425..639 17..240 329 34.6 Plus
CG30088-PB 281 CG30088-PB 67..272 14..235 327 37.6 Plus
CG11843-PB 316 CG11843-PB 90..313 8..239 326 36 Plus
CG11843-PA 316 CG11843-PA 90..313 8..239 326 36 Plus
lint-PB 1674 CG8213-PB 1461..1667 17..235 325 35.9 Plus
lint-PC 1693 CG8213-PC 1480..1686 17..235 325 35.9 Plus
CG3355-PA 314 CG3355-PA 92..302 5..235 324 38.6 Plus
CG30082-PB 280 CR30082-PB 63..276 15..240 316 36.9 Plus
CG11842-PA 319 CG11842-PA 88..316 2..239 316 33.5 Plus
CG17572-PA 385 CG17572-PA 152..384 9..241 316 35.9 Plus
CG18735-PA 364 CG18735-PA 108..316 17..240 314 35.2 Plus
CG4613-PC 374 CG4613-PC 160..367 15..240 313 38.2 Plus
CG4613-PB 374 CG4613-PB 160..367 15..240 313 38.2 Plus
CG1299-PB 442 CG1299-PB 206..439 1..240 312 34.7 Plus
CG1299-PA 511 CG1299-PA 275..508 1..240 312 34.7 Plus
CG30090-PA 291 CG30090-PA 62..278 14..240 305 36.1 Plus
CG11836-PF 223 CG11836-PF 12..212 17..235 299 35 Plus
CG11836-PE 223 CG11836-PE 12..212 17..235 299 35 Plus
CG11836-PG 223 CG11836-PG 12..212 17..235 299 35 Plus
CG11836-PC 223 CG11836-PC 12..212 17..235 299 35 Plus
CG11836-PA 223 CG11836-PA 12..212 17..235 299 35 Plus
CG11836-PB 223 CG11836-PB 12..212 17..235 299 35 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24127-PA 389 GI24127-PA 151..388 1..240 918 72.1 Plus
Dmoj\GI24319-PA 436 GI24319-PA 194..435 1..240 565 47.7 Plus
Dmoj\GI10853-PA 285 GI10853-PA 37..284 1..240 512 47 Plus
Dmoj\GI24877-PA 392 GI24877-PA 142..392 1..241 500 42.6 Plus
Dmoj\GI22780-PA 412 GI22780-PA 160..412 1..241 486 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12453-PA 383 GL12453-PA 143..383 1..241 1025 77.6 Plus
Dper\GL14056-PA 423 GL14056-PA 181..422 1..240 555 46.9 Plus
Dper\GL23240-PA 395 GL23240-PA 145..395 1..241 501 43.4 Plus
Dper\GL12316-PA 391 GL12316-PA 143..391 1..241 497 46.4 Plus
Dper\GL14057-PA 418 GL14057-PA 163..410 1..240 462 39 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15903-PB 241 GA15903-PB 1..241 1..241 1033 78 Plus
Dpse\GA15903-PA 383 GA15903-PA 143..383 1..241 1031 78 Plus
Dpse\GA27509-PB 241 GA27509-PB 1..241 1..241 1028 77.6 Plus
Dpse\GA27509-PA 383 GA27509-PA 143..383 1..241 1026 77.6 Plus
Dpse\GA21994-PA 423 GA21994-PA 181..422 1..240 556 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10972-PA 391 GM10972-PA 151..391 1..241 1259 96.7 Plus
Dsec\GM12163-PA 418 GM12163-PA 176..417 1..240 570 46.7 Plus
Dsec\GM24220-PA 402 GM24220-PA 152..401 1..240 499 42.8 Plus
Dsec\GM12164-PA 425 GM12164-PA 164..411 1..240 459 39 Plus
Dsec\GM26516-PA 400 GM26516-PA 164..400 15..241 432 38.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19946-PA 391 GD19946-PA 151..391 1..241 1259 96.7 Plus
Dsim\GD17168-PA 418 GD17168-PA 176..417 1..240 567 46.3 Plus
Dsim\GD19011-PA 392 GD19011-PA 142..391 1..240 506 43.2 Plus
Dsim\GD19715-PA 392 GD19715-PA 144..391 1..240 492 46.6 Plus
Dsim\GD21025-PA 400 GD21025-PA 149..400 1..241 443 38.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10951-PA 386 GJ10951-PA 148..385 1..240 915 70.4 Plus
Dvir\GJ10404-PA 426 GJ10404-PA 183..425 1..240 571 48.4 Plus
Dvir\GJ14460-PA 396 GJ14460-PA 148..395 1..240 514 44.4 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 627..876 1..240 499 42.4 Plus
Dvir\GJ22783-PA 401 GJ22783-PA 149..400 1..240 492 41.7 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 257..504 9..239 266 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12018-PA 384 GK12018-PA 144..384 1..241 957 71.8 Plus
Dwil\GK22647-PA 279 GK22647-PA 42..279 1..241 755 58.5 Plus
Dwil\GK13136-PA 412 GK13136-PA 170..411 1..240 607 50.2 Plus
Dwil\GK11130-PA 392 GK11130-PA 142..391 1..240 509 45.2 Plus
Dwil\GK10951-PA 391 GK10951-PA 143..391 1..241 472 43 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24940-PA 391 GE24940-PA 151..391 1..241 1237 95 Plus
Dyak\GE23396-PA 417 GE23396-PA 175..416 1..240 575 46.9 Plus
Dyak\GE24296-PA 392 GE24296-PA 142..391 1..240 499 43.2 Plus
Dyak\GE25404-PA 376 GE25404-PA 128..375 1..240 479 45.8 Plus
Dyak\GE23362-PA 364 GE23362-PA 127..364 1..241 448 40.9 Plus

SD05069.hyp Sequence

Translation from 494 to 1219

> SD05069.hyp
MALLEYVDNRGRRELSCGGSLINNRYVLTAAHCVIGAVETEVGHLTTVRL
GEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRL
DRPVVLNEYIQPVCLPLVSTRMAINTGELLVVSGWGRTTTARKSTIKQRL
DLPVNDHDYCARKFATRNIHLISSQLCVGGEFYRDSCDGDSGGPLMRRGF
DQAWYQEGVVSFGNRCGLEGWPGVYTRVADYMDWIVETIRP*

SD05069.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 151..391 1..241 1294 100 Plus
Sp7-PE 391 CG3066-PE 151..391 1..241 1294 100 Plus
Sp7-PA 391 CG3066-PA 151..391 1..241 1294 100 Plus
CG9733-PB 417 CG9733-PB 175..416 1..240 578 46.9 Plus
CG9733-PA 418 CG9733-PA 176..417 1..240 578 46.9 Plus