Clone SD05212 Report

Search the DGRC for SD05212

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:12
Vector:pOT2
Associated Gene/TranscriptRhoL-RA
Protein status:SD05212.pep: gold
Preliminary Size:1273
Sequenced Size:1054

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9366 2001-01-01 Release 2 assignment
CG9366 2003-01-01 Sim4 clustering to Release 3
CG9366 2003-02-22 Blastp of sequenced clone
RhoL 2008-04-29 Release 5.5 accounting
RhoL 2008-08-15 Release 5.9 accounting
RhoL 2008-12-18 5.12 accounting

Clone Sequence Records

SD05212.complete Sequence

1054 bp (1054 high quality bases) assembled on 2003-02-22

GenBank Submission: AY069811

> SD05212.complete
ACATCGCGTGCGATCGGTTGTTGCTATTCGTTTATCCGGTTTTATACTCT
CGCCGCCGCCAGTTCGAGTAATCCACATCCACACTGCGATCAAGTCGCAC
GTCATCGCCAGCCAGACGTGTTGTTCGATTGATTATTGCAAATAGTACGC
ATACGGATAAAAGTACGGGCACACAAGTCCCGTATCTAAAATTCTTGCTT
AACAAAGACGAACGGGGAAAAAAACCGGGAATGACGGCGAACATAACGAA
GAGTCCGCGCCCGCTGAAAATAACCATCGTGGGCGATGGCATGGTGGGCA
AAACCTGCATGCTGATAACCTACACACGGAACGAGTTCCCCGAGGAGTAC
ATACCCACAGTGTTCGACAATCACGCCTGCAACATAGCCGTAGATGATCG
GGACTACAATCTGACCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAA
GGCTGCGCCCCCTGAGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTAT
TCGATCAGCAGTAGGACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCC
GGAGATCCGTCACTTCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCA
AACTGGACTTGCGCATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAG
GGAAAAAAGATGCGCAAAGAGATACACGCATTCAACTTGGTCGAGTGCTC
CGCCAAGAAGAAGCAGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAG
CCGTGGAGAGGAAACCAAAGACGACGTCCAAGCAATCGTGCAAAATACTG
TGAACTATGTGTATGCCTAATTTTAAATATTGTTATTATGCGTAATGTAT
TATGCTACTAATTCGCCTGACTATTTGTGCTTCGTTTTCGCAAAAGGGAA
AAAAACTGTGTAGAAAATTTAACGTTAAGTTTGTATAATTAAGTGCCACT
TGTGTGAATCCTTATGTTATATATGCAGCCAGAAGGCATTAATTGTAAAA
AGATAAATAAAAACAGCACAAAATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

SD05212.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RA 1226 RhoL-RA 101..1129 1..1029 5130 99.9 Plus
RhoL.a 1097 RhoL.a 162..1000 191..1029 4180 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5323043..5323423 1025..645 1905 100 Minus
chr3R 27901430 chr3R 5323728..5324011 476..192 1360 99.3 Minus
chr3R 27901430 chr3R 5328208..5328398 191..1 955 100 Minus
chr3R 27901430 chr3R 5323479..5323650 648..477 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497191..9497575 1029..645 1910 99.7 Minus
3R 32079331 3R 9497880..9498164 476..192 1425 100 Minus
3R 32079331 3R 9502375..9502565 191..1 955 100 Minus
3R 32079331 3R 9497631..9497802 648..477 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9238022..9238406 1029..645 1910 99.7 Minus
3R 31820162 3R 9238711..9238995 476..192 1425 100 Minus
3R 31820162 3R 9243206..9243396 191..1 955 100 Minus
3R 31820162 3R 9238462..9238633 648..477 860 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:50:50 has no hits.

SD05212.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:51:29 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5323480..5323650 477..647 100 <- Minus
chr3R 5323043..5323420 648..1025 100 <- Minus
chr3R 5323728..5324011 192..476 99 <- Minus
chr3R 5328208..5328398 1..191 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:00:50 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 231..803 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:41 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 231..803 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:52 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 33..645 191..803 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:04 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 231..803 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:48 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 33..645 191..803 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:07 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 13..1037 1..1025 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:40 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 13..1037 1..1025 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:52 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 17..1041 1..1025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:04 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 13..1037 1..1025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:48 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 17..1041 1..1025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:29 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497195..9497572 648..1025 99 <- Minus
3R 9497632..9497802 477..647 100 <- Minus
3R 9497880..9498164 192..476 100 <- Minus
3R 9502375..9502565 1..191 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:29 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497195..9497572 648..1025 99 <- Minus
3R 9497632..9497802 477..647 100 <- Minus
3R 9497880..9498164 192..476 100 <- Minus
3R 9502375..9502565 1..191 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:29 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497195..9497572 648..1025 99 <- Minus
3R 9497632..9497802 477..647 100 <- Minus
3R 9497880..9498164 192..476 100 <- Minus
3R 9502375..9502565 1..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:52 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5322917..5323294 648..1025 99 <- Minus
arm_3R 5323354..5323524 477..647 100 <- Minus
arm_3R 5323602..5323886 192..476 100 <- Minus
arm_3R 5328097..5328287 1..191 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:26 Download gff for SD05212.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9238026..9238403 648..1025 99 <- Minus
3R 9238463..9238633 477..647 100 <- Minus
3R 9238711..9238995 192..476 100 <- Minus
3R 9243206..9243396 1..191 100   Minus

SD05212.pep Sequence

Translation from 230 to 802

> SD05212.pep
MTANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHAC
NIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFEN
VKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKFVTTQEGKKMRKEIHA
FNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKIL*

SD05212.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16059-PA 189 GF16059-PA 1..189 1..190 870 84.3 Plus
Dana\GF20423-PA 191 GF20423-PA 4..191 12..190 523 51.1 Plus
Dana\GF23788-PA 192 GF23788-PA 4..176 12..175 521 55.5 Plus
Dana\GF10067-PA 192 GF10067-PA 4..192 12..190 519 52.9 Plus
Dana\GF16294-PA 195 GF16294-PA 5..195 10..190 518 51.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17369-PA 190 GG17369-PA 1..190 1..190 990 94.7 Plus
Dere\GG19248-PA 191 GG19248-PA 4..191 12..190 524 51.1 Plus
Dere\GG14611-PA 192 GG14611-PA 4..192 12..190 521 52.9 Plus
Dere\GG14963-PA 192 GG14963-PA 4..192 12..190 520 52.6 Plus
Dere\GG11563-PA 195 GG11563-PA 5..195 10..190 518 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19398-PA 185 GH19398-PA 1..185 5..190 854 83.9 Plus
Dgri\GH16613-PA 192 GH16613-PA 4..192 12..190 531 53.4 Plus
Dgri\GH19274-PA 195 GH19274-PA 5..195 10..190 529 52.4 Plus
Dgri\GH16006-PA 192 GH16006-PA 4..192 12..190 520 52.9 Plus
Dgri\GH12491-PA 191 GH12491-PA 4..191 12..190 519 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PA 190 CG9366-PA 1..190 1..190 1007 100 Plus
RhoL-PB 214 CG9366-PB 25..214 1..190 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 12..190 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 12..190 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 12..190 516 51.6 Plus
Rac1-PB 192 CG2248-PB 4..192 12..190 506 52.9 Plus
Rac1-PA 192 CG2248-PA 4..192 12..190 506 52.9 Plus
Mtl-PC 195 CG5588-PC 5..195 10..190 505 52.4 Plus
Mtl-PA 195 CG5588-PA 5..195 10..190 505 52.4 Plus
Mtl-PB 195 CG5588-PB 5..195 10..190 505 52.4 Plus
Rac2-PB 192 CG8556-PB 4..176 12..175 502 55.5 Plus
Rac2-PA 192 CG8556-PA 4..176 12..175 502 55.5 Plus
Rho1-PA 192 CG8416-PA 7..187 13..181 480 50.3 Plus
Rho1-PG 192 CG8416-PG 7..187 13..181 480 50.3 Plus
Rho1-PF 192 CG8416-PF 7..187 13..181 480 50.3 Plus
Rho1-PD 192 CG8416-PD 7..187 13..181 480 50.3 Plus
Rho1-PC 192 CG8416-PC 7..187 13..181 480 50.3 Plus
Rho1-PB 192 CG8416-PB 7..187 13..181 480 50.3 Plus
RhoU-PC 582 CG34104-PC 389..559 9..172 260 33.9 Plus
RhoU-PB 582 CG34104-PB 389..559 9..172 260 33.9 Plus
Rap1-PC 184 CG1956-PC 2..184 10..190 224 31.6 Plus
Rap1-PB 184 CG1956-PB 2..184 10..190 224 31.6 Plus
Rap1-PA 184 CG1956-PA 2..184 10..190 224 31.6 Plus
Rab39-PB 218 CG12156-PB 11..175 13..175 220 36.1 Plus
Rab39-PA 218 CG12156-PA 11..175 13..175 220 36.1 Plus
Rala-PB 197 CG2849-PB 1..177 1..180 218 31.5 Plus
Rala-PC 201 CG2849-PC 1..181 1..184 217 31.4 Plus
Rala-PA 201 CG2849-PA 1..181 1..184 217 31.4 Plus
Rab19-PB 219 CG7062-PP3-RB 23..187 13..178 216 32.5 Plus
Rab19-PA 219 CG7062-PA 23..187 13..178 216 32.5 Plus
Rab6-PB 208 CG6601-PB 11..184 10..186 214 31.3 Plus
Rab6-PA 208 CG6601-PA 11..184 10..186 214 31.3 Plus
Ras85D-PA 189 CG9375-PA 5..177 13..189 213 29.6 Plus
Rab21-PC 222 CG17515-PC 15..169 13..169 209 32.9 Plus
Rab21-PD 222 CG17515-PD 15..169 13..169 209 32.9 Plus
Ric-PB 264 CG8418-PB 52..223 4..178 209 29.9 Plus
Ric-PA 264 CG8418-PA 52..223 4..178 209 29.9 Plus
Ras64B-PA 192 CG1167-PA 7..168 13..177 208 30.5 Plus
Rab11-PA 214 CG5771-PA 13..174 13..177 208 34.1 Plus
Rab11-PB 214 CG5771-PB 13..174 13..177 208 34.1 Plus
Rab18-PA 197 CG3129-PA 4..165 10..175 206 30.2 Plus
Rab10-PA 204 CG17060-PA 11..181 13..188 206 29.2 Plus
Rheb-PB 182 CG1081-PB 8..177 14..186 205 32.6 Plus
Rheb-PA 182 CG1081-PA 8..177 14..186 205 32.6 Plus
Rab9Fb-PA 214 CG32670-PA 9..161 13..168 205 36.1 Plus
Rab26-PE 410 CG34410-PE 214..378 13..178 205 30.8 Plus
Rab26-PD 410 CG34410-PD 214..378 13..178 205 30.8 Plus
Rab26-PC 410 CG34410-PC 214..378 13..178 205 30.8 Plus
Rab35-PB 201 CG9575-PB 10..182 13..188 200 30.9 Plus
Rab35-PD 201 CG9575-PD 10..182 13..188 200 30.9 Plus
Rab35-PA 201 CG9575-PA 10..182 13..188 200 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22601-PA 185 GI22601-PA 1..185 5..190 863 85.5 Plus
Dmoj\GI12458-PA 192 GI12458-PA 4..192 12..190 532 54 Plus
Dmoj\GI22015-PA 195 GI22015-PA 5..195 10..190 529 52.4 Plus
Dmoj\GI12273-PA 192 GI12273-PA 4..192 12..190 521 52.9 Plus
Dmoj\GI11109-PA 191 GI11109-PA 4..191 12..190 520 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22229-PA 190 GL22229-PA 1..190 1..190 912 86.8 Plus
Dper\GL13704-PA 195 GL13704-PA 5..195 10..190 529 52.4 Plus
Dper\GL24253-PA 192 GL24253-PA 4..192 12..190 526 52.6 Plus
Dper\GL18265-PA 191 GL18265-PA 4..191 12..190 524 51.1 Plus
Dper\GL20555-PA 192 GL20555-PA 7..187 13..181 493 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21734-PA 190 GA21734-PA 1..190 1..190 912 86.8 Plus
Dpse\GA18989-PA 195 GA18989-PA 5..195 10..190 529 52.4 Plus
Dpse\GA23612-PA 192 GA23612-PA 4..192 12..190 526 52.6 Plus
Dpse\GA11680-PA 191 GA11680-PA 4..191 12..190 524 51.1 Plus
Dpse\GA15321-PA 192 GA15321-PA 4..192 12..190 521 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26254-PA 190 GM26254-PA 1..190 1..190 1004 97.9 Plus
Dsec\GM14225-PA 192 GM14225-PA 4..192 12..190 521 52.9 Plus
Dsec\GM13759-PA 192 GM13759-PA 4..192 12..190 520 52.6 Plus
Dsec\GM16346-PA 195 GM16346-PA 5..195 10..190 519 52.4 Plus
Dsec\GM11478-PA 195 GM11478-PA 5..195 10..190 519 52.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20793-PA 190 GD20793-PA 1..190 1..190 1010 98.9 Plus
Dsim\GD17456-PA 191 GD17456-PA 4..191 12..190 524 51.1 Plus
Dsim\GD13487-PA 192 GD13487-PA 4..192 12..190 521 52.9 Plus
Dsim\GD13056-PA 192 GD13056-PA 4..192 12..190 520 52.6 Plus
Dsim\GD11158-PA 192 GD11158-PA 7..187 13..181 491 50.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23847-PA 185 GJ23847-PA 1..185 5..190 864 86 Plus
Dvir\GJ12360-PA 192 GJ12360-PA 4..192 12..190 529 53.4 Plus
Dvir\GJ10465-PA 195 GJ10465-PA 5..195 10..190 526 51.8 Plus
Dvir\GJ15962-PA 191 GJ15962-PA 4..191 12..190 522 50.5 Plus
Dvir\GJ13209-PA 192 GJ13209-PA 4..192 12..190 521 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14302-PA 189 GK14302-PA 1..189 1..190 882 83.7 Plus
Dwil\GK11760-PA 195 GK11760-PA 5..195 10..190 525 51.8 Plus
Dwil\GK16805-PA 192 GK16805-PA 4..176 12..175 521 55.5 Plus
Dwil\GK20502-PA 192 GK20502-PA 4..192 12..190 520 52.9 Plus
Dwil\GK17312-PA 191 GK17312-PA 4..191 12..190 519 50.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24773-PA 190 GE24773-PA 1..190 1..190 984 93.7 Plus
Dyak\GE15867-PA 191 GE15867-PA 4..191 12..190 524 51.1 Plus
Dyak\GE20972-PA 192 GE20972-PA 4..192 12..190 521 52.9 Plus
Dyak\GE20412-PA 192 GE20412-PA 4..192 12..190 520 52.6 Plus
Dyak\GE23748-PA 195 GE23748-PA 5..195 10..190 518 51.8 Plus

SD05212.hyp Sequence

Translation from 230 to 802

> SD05212.hyp
MTANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHAC
NIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFEN
VKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKFVTTQEGKKMRKEIHA
FNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKIL*

SD05212.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PA 190 CG9366-PA 1..190 1..190 1007 100 Plus
RhoL-PB 214 CG9366-PB 25..214 1..190 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 12..190 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 12..190 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 12..190 516 51.6 Plus