Clone SD05282 Report

Search the DGRC for SD05282

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:82
Vector:pOT2
Associated Gene/TranscriptITP-RD
Protein status:SD05282.pep: gold
Preliminary Size:2941
Sequenced Size:3022

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13586 2001-01-01 Release 2 assignment
CG13586 2001-07-04 Blastp of sequenced clone
itp 2008-04-29 Release 5.5 accounting
itp 2008-08-15 Release 5.9 accounting
itp 2008-12-18 5.12 accounting

Clone Sequence Records

SD05282.complete Sequence

3022 bp (3022 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060468

> SD05282.complete
TTTTTCCTCCCTTCCTTTGGTCTCGCCGGAAAATCCTTGTGTCGCGATCG
CGTCCGTTGCCTTGTCTCGAAATCTGCATAAATACAAATATACATAGCTG
TGACTATAGCTACGCTGCCGATGTGCAAATATTAATATTTTGAGCTAAAA
CATATACTTTTGTGAGCTGGATAAATACGCAAGTGCACATATGTATGTAT
GTATGTATTTATACTCGTAGTAGTATCGCCAAAGTGTGTGAATAATCGGT
GCGAACGTGGGAATCGCGCTGGCGTTGCAAGTTCGCGGTGCAGTAGTTGC
TGCTGTAACGTCAATGTGGAGTGTCAATTATGTGGAAATATATTTACAAA
GATGCCCCCTGTTTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGAGTGATT
CTCCTGGCACTGAATGTCACTAAAAGAGGGTGGGAGTGGAAGTGGAAGTG
GGGCTGCCCTCTTTCCAGTGCGTGTAGATCAGTTACCGCCAGCAGCAACA
ACAACAACAACAACAACGAGAACAGCAGCAATAACAAACAAACAAACAAA
CAAGCAAGCGACAATTCACATTCATTTCCATTCATTGCTGCGATTATCGC
CAGTTTTGCTTTGCTCTTTCACCACGCACGAATACGATTACGAATAACGA
ATACGAACGTAGAAAAATGTGCGGGGGCTGCGGAGGCCGAAGCGAATGAA
GAGGAAGCGGCAACAGTCGATAAGTTTGCTCTGGGCACGCCCCCTTATGA
CGCCCCCTGTGACGCGTTATCAGCGGACACCCAAGAAACACAACAAACAC
AAAGACCTGACCAAAATCCACACAAAATGGCGATAAACTCGAGTGCCAGA
GAATCGCCGCGGGCCTAAAAAGTTCGTTCCCCAAAATACAAAAAGAGGAG
GTAAACAAACTCGTTTCTGCCCCACAACAACACCACCCATGCCCCCCGAA
AACCGAGAGATCCCGCACCACAACCAGCGATAAGCATCCGAAGACGAAGA
TTTGGGTGGCCCAGTCCACAGAAAGCCCCGCACCAACCCCGAAACAAGCG
CCTAAGATGTGTTCCCGCAACATAAAGATCTCGGTGGTGCTGTTTCTCGT
CCTGATACCAATCTTCGCCGCCTTGCCACACAACCACAATCTGTCGAAGC
GCAGCAACTTCTTCGACCTGGAGTGCAAGGGCATCTTCAACAAGACCATG
TTCTTCCGACTGGACCGCATCTGCGAGGACTGCTACCAGTTGTTCCGCGA
GACGAGTATACACCGATTATGCAAGAAAGACTGCTTTGATTCAAAATGGT
TTGGCGAATGCCTGAAAGTGCTGTTAATACCCGAAGAGGAAATATCCAAC
CTACAGCACTTTCTGAGAGTAGTGAACGGCTCGCCCATATCCTTCAACAT
GGGGCCGCAAACATAACTCTAAGTCCCCGCCCCACACACCCACAGCCCCA
ACACACCATACAGCACACAACAAACAACACACACCACACACAGCTGAGAA
TCGCTGCGAATATCGTGTGTTGGAACGGGCATCCGCATCCAGATACAGAT
CCAGATCCAGATCGAGAAACAGTCCCACTACGACCACACATGCAGAGCCA
GAACACAGAAATCTAAAATATTAAAACGCCCAAATTTAATTCGTACTTAT
TTATTACTGTATGCCTTACAGTTTTTACTATATGTGTTTTTTTAAAAACG
AATTATTTTTATTAATTTATTGAGAACGTTATGCGTTTGTTGTAAGTAAC
ATAATTGGGGAGTGGGAGATGGGCGATGATGATGATCAGATGATGATGAT
GATGATGTGCAGGAGGAGGATCGCAGATCTCGCACTCCCCACATATACAT
AGAAGCCGAAGTATTTATTTTTAAGTATTCTTAGCTTGTTTTATTATTAT
TGCGTTATGCGGTTTGTATATAAAATAAACAAAACGAAATCCATTGTTTT
TAATCTATGTAATGTAAAATGATAACTTTTATTTTTGTATCTGTATTCTA
CTGTAAAATCAGCATTTAGAGTTTACATTTTACACGATTTTCCGCAAGGG
CAAAACTACAATAAAGATAAACCCATACGAACACACACATACACACATAC
ACACATACACACACACTCACACACACACATATATACACCGCAATCGAGAC
CGAAAGTATTTTGCAAATGTATTACACTTACAATTTTGTGCTATTTTGTA
AAGATGAAACCCTGAATTAGTGTAAATCTGTTGGCGCAAAACGGAGATAT
GTATTTACCTATATAGTATATAGTATATGCATACCTATCTAAAGCTAAAG
CCTTACATATATCCGAATACGAGTACCCTACACACATGCTAAATATTAGA
GAGAAACGCAAGATCGCAATTTGTGCAAGACACAAACAAAAACCTGGTAA
AAACACGCGAAGAACGGAACGACTGCATTACAAATGTGGCAATAAATAAT
ACATAATTAATAAAACCCTGTAAATTAATAAGGATAATCAATCATTCGCT
GGCTATTTGAGAGCATCAAAATTGTGATAAATGAGAATTAGAATGCGAAT
GCGCGACGCAGGACACCGCCAGAGAAAGAGACCGCCATACAGAAGGCGAC
AGAGACAGACAGACTGCAGCTGGCGATTTGCGCGCGTTTCTGGCGCGACT
AAAAACGCCTGCTTACCGTTTTTGTTTTGGCAAGAATGCTTCGGATCGCC
CTTCTTCAACGCCTGCATAGAGGCTCTTCAGCTGCACGAGGAGATGGACA
AGTATAACGAATGGCGCGATACCCTGGGTCGCAAGTAAAGTGCGATTCTC
TGGGATTTTCTGGCACCGTCACTGGCACGAGCAGCTACTTAATTCTATGA
ACTATTAACTAAAACTATTATTATTGATAACTGTGGCAGAACACGGCACG
AAACTATGGCAACCAGGAAACGATCGACCCGAGGAATGTGTACCACTTGA
AGAAACAACTAAGCTAAACATCTAGCTACAAGAGAAAGCAGAGCAAAAAT
GTTGAAAAAAAAAAAAAAAAAA

SD05282.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
itp-RD 3692 itp-RD 1032..3102 953..3013 10005 99.1 Plus
itp-RF 3218 itp-RF 662..2628 1057..3013 9485 99.1 Plus
itp-RD 3692 itp-RD 87..1035 1..949 4730 99.8 Plus
itp-RE 2262 itp-RE 87..1035 1..949 4730 99.8 Plus
itp-RE 2262 itp-RE 1354..1686 2680..3013 1630 99.7 Plus
itp-RE 2262 itp-RE 1032..1365 953..1286 1625 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20442221..20443631 1275..2680 6660 98.7 Plus
chr2R 21145070 chr2R 20425887..20426942 1..1056 5265 99.9 Plus
chr2R 21145070 chr2R 20443960..20444284 2679..3004 1580 99.7 Plus
chr2R 21145070 chr2R 20441288..20441512 1055..1279 1095 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24556284..24557700 1275..2680 6755 98.9 Plus
2R 25286936 2R 24539972..24541020 1..1056 5125 99.2 Plus
2R 25286936 2R 24558029..24558362 2679..3013 1625 99.7 Plus
2R 25286936 2R 24555352..24555576 1055..1279 1095 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24557483..24558899 1275..2680 6785 98.9 Plus
2R 25260384 2R 24541171..24542119 1..949 4730 99.8 Plus
2R 25260384 2R 24559228..24559561 2679..3013 1635 99.7 Plus
2R 25260384 2R 24556551..24556775 1055..1279 1095 99.1 Plus
2R 25260384 2R 24542116..24542219 953..1056 520 100 Plus
Blast to na_te.dros performed 2019-03-15 16:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 5005..5069 1876..1937 120 69.7 Plus

SD05282.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:50:24 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20425887..20426942 1..1056 99 -> Plus
chr2R 20441290..20441507 1057..1274 99 -> Plus
chr2R 20442221..20443630 1275..2679 98 -> Plus
chr2R 20443961..20444284 2680..3004 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:26:56 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 1..360 1057..1416 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:30 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 1..360 1057..1416 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:11:30 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RF 1..360 1057..1416 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:37 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 1..360 1057..1416 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:38 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
ITP-RF 1..360 1057..1416 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:26:55 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 1..3007 1..3004 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:30 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 31..3037 1..3004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:30 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 32..3038 1..3004 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:38 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
itp-RD 1..3007 1..3004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:38 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
ITP-RD 32..3038 1..3004 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:24 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24539972..24541020 1..1056 99 -> Plus
2R 24555354..24555571 1057..1274 99 -> Plus
2R 24556284..24557699 1275..2679 98 -> Plus
2R 24558030..24558353 2680..3004 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:24 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24539972..24541020 1..1056 99 -> Plus
2R 24555354..24555571 1057..1274 99 -> Plus
2R 24556284..24557699 1275..2679 98 -> Plus
2R 24558030..24558353 2680..3004 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:24 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24539972..24541020 1..1056 99 -> Plus
2R 24555354..24555571 1057..1274 99 -> Plus
2R 24556284..24557699 1275..2679 98 -> Plus
2R 24558030..24558353 2680..3004 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:30 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20427495..20428543 1..1056 99 -> Plus
arm_2R 20442877..20443094 1057..1274 99 -> Plus
arm_2R 20443807..20445222 1275..2679 98 -> Plus
arm_2R 20445553..20445876 2680..3004 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:19 Download gff for SD05282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24541189..24542237 1..1056 99 -> Plus
2R 24556571..24556788 1057..1274 99 -> Plus
2R 24557501..24558916 1275..2679 98 -> Plus
2R 24559247..24559570 2680..3004 99   Plus

SD05282.hyp Sequence

Translation from 938 to 1415

> SD05282.hyp
MPPERSRTTTSDKHPKTKIWVAQSTESPAPTPKQAPKMCSRNIKISVVLF
LVLIPIFAALPHNHNLSKRSNFFDLECKGIFNKTMFFRLDRICEDCYQLF
RETSIHRLCKKDCFDSKWFGECLKVLLIPEEEISNLQHFLRVVNGSPISF
NMGPQT*

SD05282.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
ITP-PG 119 CG13586-PG 1..119 38..156 641 100 Plus
ITP-PD 119 CG13586-PD 1..119 38..156 641 100 Plus
ITP-PF 119 CG13586-PF 1..119 38..156 641 100 Plus
ITP-PC 119 CG13586-PC 1..114 38..151 529 86 Plus
ITP-PE 108 CG13586-PE 1..94 38..131 441 86.2 Plus

SD05282.pep Sequence

Translation from 1056 to 1415

> SD05282.pep
MCSRNIKISVVLFLVLIPIFAALPHNHNLSKRSNFFDLECKGIFNKTMFF
RLDRICEDCYQLFRETSIHRLCKKDCFDSKWFGECLKVLLIPEEEISNLQ
HFLRVVNGSPISFNMGPQT*

SD05282.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13627-PA 119 GF13627-PA 1..119 1..119 612 97.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22978-PA 119 GG22978-PA 1..119 1..119 623 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19999-PA 254 GH19999-PA 136..254 1..119 607 93.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
ITP-PG 119 CG13586-PG 1..119 1..119 641 100 Plus
ITP-PD 119 CG13586-PD 1..119 1..119 641 100 Plus
ITP-PF 119 CG13586-PF 1..119 1..119 641 100 Plus
ITP-PC 119 CG13586-PC 1..114 1..114 529 86 Plus
ITP-PE 108 CG13586-PE 1..94 1..94 441 86.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19181-PA 121 GI19181-PA 1..117 1..117 581 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10219-PA 158 GL10219-PA 39..155 1..117 612 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12379-PB 120 GA12379-PB 1..117 1..117 601 97.4 Plus
Dpse\GA12379-PD 119 GA12379-PD 1..114 1..114 504 84.2 Plus
Dpse\GA12379-PC 108 GA12379-PC 1..94 1..94 419 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11873-PA 119 GM11873-PA 1..119 1..119 613 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11871-PA 149 GD11871-PA 31..149 1..119 630 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20243-PA 119 GJ20243-PA 1..119 1..119 589 92.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19672-PA 127 GK19672-PA 8..124 1..117 586 94 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14416-PA 119 GE14416-PA 1..119 1..119 623 100 Plus