BDGP Sequence Production Resources |
Search the DGRC for SD05285
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 52 |
Well: | 85 |
Vector: | pOT2 |
Associated Gene/Transcript | Syb-RA |
Protein status: | SD05285.pep: gold |
Preliminary Size: | 1011 |
Sequenced Size: | 810 |
Gene | Date | Evidence |
---|---|---|
CG12210 | 2001-01-01 | Release 2 assignment |
CG12210 | 2003-03-19 | Blastp of sequenced clone |
Syb | 2008-04-29 | Release 5.5 accounting |
Syb | 2008-08-15 | Release 5.9 accounting |
Syb | 2008-12-18 | 5.12 accounting |
810 bp (810 high quality bases) assembled on 2003-03-19
GenBank Submission: BT009942
> SD05285.complete CGGTCACACTGATCACAAGCTGATATTTCTATAAAAAAAAATAGTGCTAT TTAAAAAGCAGCCGCAGTTTTCCGTGGAAAACCCGAAATACACAGCAGTA TTCTACAGGCACATTGTCAAGCAAATTCACAATGGAGAACAACGAAGCCC CCTCCCCCTCGGGATCCAACAACAACGAGAACAACAATGCAGCCCAGAAG AAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCG TGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGG GCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAG GCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGATGAT CATCCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCG TTTGGCCGTCTAGTAGTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATC ACCCAAGCACCGCCGCACTAAAGGCCTCCTAGGGAGTGAGGTAAACACAT GGATACGAAATGGAAAAGGACCAAACAAACACAACTGGGACGGAAACCTT TCTGGTCTTTTTGCGCAATGAGAGAAGGGGAGATGAAGAAAATCAAAAGG ATAACTTACTAAAATTGCGTCTAGCATATATTTAACCAGAATGTAATTAT TAAATCTTAATGTTAAACTTAACATTTTTACGTGTCGTAGCCGAGACCAG AGGTCCCATTAATGTGTATTGCATATATACAATTATATATAGTAAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syb-RA | 948 | Syb-RA | 21..812 | 1..791 | 3890 | 99.6 | Plus |
Syb-RD | 1123 | Syb-RD | 21..468 | 1..448 | 2225 | 99.7 | Plus |
Syb-RD | 1123 | Syb-RD | 682..1030 | 444..791 | 1690 | 99.4 | Plus |
Syb-RB | 1192 | Syb-RB | 751..1099 | 444..791 | 1690 | 99.4 | Plus |
Syb-RB | 1192 | Syb-RB | 268..537 | 179..448 | 1335 | 99.6 | Plus |
Syb-RB | 1192 | Syb-RB | 21..198 | 1..178 | 890 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6137007..6137355 | 791..444 | 1680 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 6138406..6138671 | 444..179 | 1300 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 6139815..6139935 | 121..1 | 605 | 100 | Minus |
chr2R | 21145070 | chr2R | 6139460..6139519 | 179..120 | 300 | 100 | Minus |
chr3L | 24539361 | chr3L | 1634924..1635035 | 365..254 | 230 | 80.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10249480..10249828 | 791..444 | 1680 | 99.4 | Minus |
2R | 25286936 | 2R | 10250879..10251144 | 444..179 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10252282..10252402 | 121..1 | 605 | 100 | Minus |
2R | 25286936 | 2R | 10251927..10251986 | 179..120 | 300 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 365..254 | 245 | 81.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10250679..10251027 | 791..444 | 1690 | 99.4 | Minus |
2R | 25260384 | 2R | 10252078..10252343 | 444..179 | 1315 | 99.6 | Minus |
2R | 25260384 | 2R | 10253481..10253601 | 121..1 | 605 | 100 | Minus |
2R | 25260384 | 2R | 10253126..10253185 | 179..120 | 300 | 100 | Minus |
3L | 28103327 | 3L | 1635328..1635439 | 365..254 | 245 | 81.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6139461..6139517 | 122..178 | 100 | <- | Minus |
chr2R | 6139815..6139935 | 1..121 | 100 | Minus | |
chr2R | 6137004..6137354 | 445..793 | 99 | <- | Minus |
chr2R | 6138406..6138671 | 179..444 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 1..390 | 132..521 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 1..390 | 132..521 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 1..390 | 132..521 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 1..390 | 132..521 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 1..390 | 132..521 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 8..802 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 8..802 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 16..810 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 8..802 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syb-RA | 16..810 | 1..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10249477..10249827 | 445..793 | 99 | <- | Minus |
2R | 10250879..10251144 | 179..444 | 99 | <- | Minus |
2R | 10251928..10251984 | 122..178 | 100 | <- | Minus |
2R | 10252282..10252402 | 1..121 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10249477..10249827 | 445..793 | 99 | <- | Minus |
2R | 10250879..10251144 | 179..444 | 99 | <- | Minus |
2R | 10251928..10251984 | 122..178 | 100 | <- | Minus |
2R | 10252282..10252402 | 1..121 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10249477..10249827 | 445..793 | 99 | <- | Minus |
2R | 10250879..10251144 | 179..444 | 99 | <- | Minus |
2R | 10251928..10251984 | 122..178 | 100 | <- | Minus |
2R | 10252282..10252402 | 1..121 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6136982..6137332 | 445..793 | 99 | <- | Minus |
arm_2R | 6138384..6138649 | 179..444 | 99 | <- | Minus |
arm_2R | 6139433..6139489 | 122..178 | 100 | <- | Minus |
arm_2R | 6139787..6139907 | 1..121 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10250676..10251026 | 445..793 | 99 | <- | Minus |
2R | 10252078..10252343 | 179..444 | 99 | <- | Minus |
2R | 10253127..10253183 | 122..178 | 100 | <- | Minus |
2R | 10253481..10253601 | 1..121 | 100 | Minus |
Translation from 131 to 520
> SD05285.pep MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL IIVLVSVWPSSSDSGSGGGNKAITQAPPH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12131-PA | 132 | GF12131-PA | 1..131 | 1..108 | 486 | 78.6 | Plus |
Dana\GF24019-PA | 190 | GF24019-PA | 37..129 | 11..103 | 323 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25222-PA | 153 | GG25222-PA | 1..153 | 1..129 | 616 | 83 | Plus |
Dere\GG14581-PA | 217 | GG14581-PA | 37..129 | 11..103 | 325 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20114-PA | 126 | GH20114-PA | 1..110 | 1..93 | 398 | 80.9 | Plus |
Dgri\GH15523-PA | 190 | GH15523-PA | 37..129 | 11..103 | 327 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syb-PE | 129 | CG12210-PE | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PA | 129 | CG12210-PA | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..152 | 1..129 | 614 | 84.2 | Plus |
Syb-PD | 109 | CG12210-PD | 1..108 | 1..108 | 526 | 98.1 | Plus |
Syb-PB | 132 | CG12210-PB | 1..131 | 1..108 | 489 | 80.2 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 28..139 | 11..125 | 322 | 61.7 | Plus |
nSyb-PK | 125 | CG17248-PK | 28..120 | 11..103 | 320 | 71 | Plus |
nSyb-PI | 135 | CG17248-PI | 37..129 | 11..103 | 320 | 71 | Plus |
nSyb-PH | 135 | CG17248-PH | 37..129 | 11..103 | 320 | 71 | Plus |
nSyb-PF | 183 | CG17248-PF | 28..120 | 11..103 | 320 | 71 | Plus |
nSyb-PA | 183 | CG17248-PA | 28..120 | 11..103 | 320 | 71 | Plus |
nSyb-PG | 192 | CG17248-PG | 37..129 | 11..103 | 320 | 71 | Plus |
nSyb-PE | 192 | CG17248-PE | 37..129 | 11..103 | 320 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20208-PA | 152 | GI20208-PA | 1..151 | 1..127 | 443 | 72.2 | Plus |
Dmoj\GI16800-PA | 192 | GI16800-PA | 37..129 | 11..103 | 322 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10482-PA | 131 | GL10482-PA | 1..130 | 1..108 | 460 | 78.5 | Plus |
Dper\GL20732-PA | 189 | GL20732-PA | 36..128 | 11..103 | 323 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11480-PA | 131 | GA11480-PA | 1..130 | 1..108 | 460 | 78.5 | Plus |
Dpse\GA28300-PA | 189 | GA28300-PA | 36..128 | 11..103 | 323 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20541-PA | 152 | GM20541-PA | 1..152 | 1..129 | 619 | 84.2 | Plus |
Dsec\GM14195-PA | 221 | GM14195-PA | 37..129 | 11..103 | 322 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25998-PA | 152 | GD25998-PA | 1..152 | 1..129 | 614 | 83.6 | Plus |
Dsim\GD17610-PA | 213 | GD17610-PA | 37..129 | 11..103 | 323 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20156-PA | 152 | GJ20156-PA | 1..151 | 1..127 | 421 | 72.2 | Plus |
Dvir\GJ12544-PA | 189 | GJ12544-PA | 37..129 | 11..103 | 323 | 71 | Plus |
Translation from 131 to 520
> SD05285.hyp MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL IIVLVSVWPSSSDSGSGGGNKAITQAPPH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syb-PE | 129 | CG12210-PE | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PA | 129 | CG12210-PA | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..152 | 1..129 | 614 | 84.2 | Plus |
Syb-PD | 109 | CG12210-PD | 1..108 | 1..108 | 526 | 98.1 | Plus |
Syb-PB | 132 | CG12210-PB | 1..131 | 1..108 | 489 | 80.2 | Plus |