Clone SD05291 Report

Search the DGRC for SD05291

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:91
Vector:pOT2
Associated Gene/TranscriptMec2-RA
Protein status:SD05291.pep: gold
Preliminary Size:1489
Sequenced Size:1276

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7635 2001-01-01 Release 2 assignment
CG7635 2001-10-10 Blastp of sequenced clone
CG7635 2003-01-01 Sim4 clustering to Release 3
Mec2 2008-04-29 Release 5.5 accounting
Mec2 2008-08-15 Release 5.9 accounting
Mec2 2008-12-18 5.12 accounting

Clone Sequence Records

SD05291.complete Sequence

1276 bp (1276 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061599

> SD05291.complete
CTGACCGCTGGCGACAGTTTCGAATCCATAGCCGATCGGAGAGCAACGAA
CGTAGGCCAGAACGGAGCAGAGAAACAGCAATGGAGCCGCACCAGGATTC
GCCCGTGTACGCCAACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCT
CCACGGCGTACATGGTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCG
GCTCTTCGAGTGCCCGGCACGACGCAGCAGTATCGTGGATTCAAAACTTC
GGAGAACGAGCCCAAGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCG
TGCTGATCTTCATCATCACATCGCCCATCGCCATCTTCATATGCTTCAAG
GTGGTCGCGGAGTACGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAG
CGGCGGAGCTCGTGGTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATG
AGTACCGCAAGGTGGACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAG
GAGATGCTGACGAAGGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTA
CTATCGCATCAGTGATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACA
GCATGTCCACTCGCCTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGC
ACTCGCAACCTGTCCGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAA
TATGCAGGCCACGTTGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGG
AGCGCGTTGAGATCAAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCC
ATGGCCGCCGAAGCGGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGC
CGCCGAGGGTGAGAAGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATG
TCATTTCCGCCAGTCCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTG
AGCAGCATCTCCGCCGAGAAGAACTCCACCATTATCTTTCCTCTGCCCAT
GGAGCTGCTGACTCCGTATTTGGCCAAATATGCCCACTTGATGGGCCCGC
CACCGGAACTTAAGCAATCGCCAGAAAAGTCAGATAACATAGTTTTAGAC
GCACTGGACGCTTGGCCGAAAACCAACCTATGATTTGAATCTAGGGCGTT
GCCAGAGTTTGAAAATATTAATGTCTTATTCATTTTTTTTTTTTTTTTAA
TAAATGCAATTCGCACTAGCTGGCAGCTTCAGCAATCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

SD05291.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1306 Mec2-RA 58..1299 1..1242 6105 99.4 Plus
CG33253-RA 1866 CG33253-RA 806..1062 615..871 505 79.7 Plus
CG33253-RA 1866 CG33253-RA 524..780 336..589 435 78.5 Plus
CG33253-RA 1866 CG33253-RA 1079..1200 888..1009 340 85.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19077934..19078447 250..763 2570 100 Plus
chrX 22417052 chrX 19078782..19079093 927..1238 1545 99.7 Plus
chrX 22417052 chrX 19076934..19077182 1..249 1245 100 Plus
chrX 22417052 chrX 19078540..19078705 764..929 830 100 Plus
chrX 22417052 chrX 19074674..19075104 336..763 665 77.5 Plus
chrX 22417052 chrX 19075176..19075341 764..929 245 76.5 Plus
chrX 22417052 chrX 19075433..19075511 931..1009 245 87.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:48:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 250..763 2540 99.6 Plus
X 23542271 X 19189882..19190197 927..1242 1535 99.1 Plus
X 23542271 X 19188035..19188283 1..249 1215 99.2 Plus
X 23542271 X 19189640..19189805 764..929 830 100 Plus
X 23542271 X 19185776..19186206 336..763 665 77.5 Plus
X 23542271 X 19186278..19186443 764..929 245 76.5 Plus
X 23542271 X 19186535..19186613 931..1009 245 87.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19197132..19197645 250..763 2540 99.6 Plus
X 23527363 X 19197980..19198295 927..1242 1535 99 Plus
X 23527363 X 19196133..19196381 1..249 1215 99.1 Plus
X 23527363 X 19197738..19197903 764..929 830 100 Plus
X 23527363 X 19193874..19194130 336..589 435 78.5 Plus
X 23527363 X 19194156..19194304 615..763 295 79.8 Plus
X 23527363 X 19194633..19194711 931..1009 245 87.3 Plus
X 23527363 X 19194376..19194483 764..871 210 79.6 Plus
Blast to na_te.dros performed 2019-03-16 07:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 3310..3373 1062..1124 118 70.8 Plus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 867..951 166..85 110 65.1 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 8716..8800 166..85 110 65.1 Minus

SD05291.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:51:31 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19078540..19078705 764..929 100 -> Plus
chrX 19076934..19077182 1..249 100 -> Plus
chrX 19077934..19078447 250..763 100 -> Plus
chrX 19078785..19079093 930..1238 91   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:01:00 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 81..1133 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:24 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 81..1133 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:55 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 81..1133 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:19 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 81..1133 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:52 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 81..1133 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:29 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1238 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:24 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1238 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:55 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1238 1..1238 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:19 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1238 1..1238 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:52 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1238 1..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:31 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
X 19188035..19188283 1..249 99 -> Plus
X 19189034..19189547 250..763 99 -> Plus
X 19189640..19189805 764..929 100 -> Plus
X 19189885..19190193 930..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:31 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
X 19188035..19188283 1..249 99 -> Plus
X 19189034..19189547 250..763 99 -> Plus
X 19189640..19189805 764..929 100 -> Plus
X 19189885..19190193 930..1238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:31 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
X 19188035..19188283 1..249 99 -> Plus
X 19189034..19189547 250..763 99 -> Plus
X 19189640..19189805 764..929 100 -> Plus
X 19189885..19190193 930..1238 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:55 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19083673..19083838 764..929 100 -> Plus
arm_X 19083918..19084226 930..1238 99   Plus
arm_X 19082068..19082316 1..249 99 -> Plus
arm_X 19083067..19083580 250..763 99 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:25 Download gff for SD05291.complete
Subject Subject Range Query Range Percent Splice Strand
X 19197738..19197903 764..929 100 -> Plus
X 19196133..19196381 1..249 99 -> Plus
X 19197132..19197645 250..763 99 -> Plus
X 19197983..19198291 930..1238 99   Plus

SD05291.hyp Sequence

Translation from 2 to 1132

> SD05291.hyp
DRWRQFRIHSRSESNERRPERSRETAMEPHQDSPVYANYEDMRNSGPASS
TAYMVNMGAAGMAPEPALRVPGTTQQYRGFKTSENEPKGCMEWVVTLFSV
LIFIITSPIAIFICFKVVAEYERAIIFRLGRLSGGARGPGMFFILPCIDE
YRKVDLRTVTFNVPQQEMLTKDSVTVTVDAVVYYRISDPLYAVIQVEDYS
MSTRLLAATTLRNIVGTRNLSELLTERETLAHNMQATLDEATEPWGVMVE
RVEIKDVSLPVSMQRAMAAEAEAARDARAKVIAAEGEKKSATALKEASDV
ISASPSALQLRYLQTLSSISAEKNSTIIFPLPMELLTPYLAKYAHLMGPP
PELKQSPEKSDNIVLDALDAWPKTNL*

SD05291.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-PA 350 CG7635-PA 1..350 27..376 1769 100 Plus
CG33253-PA 367 CG33253-PA 49..324 71..345 1064 76.1 Plus
CG33253-PB 414 CG33253-PB 49..324 71..345 1064 76.1 Plus
CG33253-PC 302 CG33253-PC 2..259 89..345 1023 78.3 Plus
CG42540-PH 393 CG42540-PH 16..343 39..359 857 55.5 Plus

SD05291.pep Sequence

Translation from 80 to 1132

> SD05291.pep
MEPHQDSPVYANYEDMRNSGPASSTAYMVNMGAAGMAPEPALRVPGTTQQ
YRGFKTSENEPKGCMEWVVTLFSVLIFIITSPIAIFICFKVVAEYERAII
FRLGRLSGGARGPGMFFILPCIDEYRKVDLRTVTFNVPQQEMLTKDSVTV
TVDAVVYYRISDPLYAVIQVEDYSMSTRLLAATTLRNIVGTRNLSELLTE
RETLAHNMQATLDEATEPWGVMVERVEIKDVSLPVSMQRAMAAEAEAARD
ARAKVIAAEGEKKSATALKEASDVISASPSALQLRYLQTLSSISAEKNST
IIFPLPMELLTPYLAKYAHLMGPPPELKQSPEKSDNIVLDALDAWPKTNL
*

SD05291.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15941-PA 353 GF15941-PA 7..353 6..350 1473 86.9 Plus
Dana\GF15940-PA 378 GF15940-PA 56..332 45..320 1047 76.2 Plus
Dana\GF25082-PA 695 GF25082-PA 349..618 49..314 823 63.8 Plus
Dana\GF13229-PA 295 GF13229-PA 28..290 49..310 694 48.3 Plus
Dana\GF17229-PA 456 GF17229-PA 56..313 57..314 652 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19211-PA 350 GG19211-PA 1..350 1..350 1704 96 Plus
Dere\GG19210-PA 365 GG19210-PA 44..324 33..319 1042 74 Plus
Dere\GG15239-PA 413 GG15239-PA 22..330 13..314 825 59.1 Plus
Dere\GG18608-PA 483 GG18608-PA 43..306 52..315 706 51.1 Plus
Dere\GG11730-PA 293 GG11730-PA 29..288 52..310 669 47.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11833-PA 344 GH11833-PA 13..333 10..326 1216 81.4 Plus
Dgri\GH12518-PA 349 GH12518-PA 50..323 42..314 1053 77 Plus
Dgri\GH15690-PA 391 GH15690-PA 26..303 43..314 820 63.1 Plus
Dgri\GH23142-PA 303 GH23142-PA 36..298 51..310 761 53.2 Plus
Dgri\GH17310-PA 402 GH17310-PA 43..328 43..325 761 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-PA 350 CG7635-PA 1..350 1..350 1769 100 Plus
CG33253-PA 367 CG33253-PA 49..324 45..319 1064 76.1 Plus
CG33253-PB 414 CG33253-PB 49..324 45..319 1064 76.1 Plus
CG33253-PC 302 CG33253-PC 2..259 63..319 1023 78.3 Plus
CG42540-PK 405 CG42540-PK 16..355 13..333 858 55.5 Plus
CG42540-PH 393 CG42540-PH 16..343 13..333 857 55.5 Plus
CG42540-PC 397 CG32245-PA 16..347 13..333 857 55.2 Plus
CG42540-PI 409 CG42540-PI 16..359 13..333 853 54 Plus
CG42540-PB 398 CG32245-PC 70..348 68..333 852 62 Plus
CG42540-PJ 501 CG42540-PJ 173..451 68..333 852 62 Plus
CG42540-PD 505 CG32245-PB 177..455 68..333 852 62 Plus
CG42540-PF 506 CG42540-PF 178..456 68..333 852 62 Plus
CG42540-PG 517 CG42540-PG 189..467 68..333 852 62 Plus
CG14736-PD 455 CG14736-PD 43..306 52..315 670 50.4 Plus
CG14736-PG 473 CG14736-PG 43..306 52..315 670 50.4 Plus
CG14736-PE 473 CG14736-PE 43..306 52..315 670 50.4 Plus
CG14644-PA 293 CG14644-PA 29..288 52..310 658 47.7 Plus
CG31358-PB 474 CG31358-PB 28..276 65..314 613 46.8 Plus
CG31358-PA 474 CG31358-PA 28..276 65..314 613 46.8 Plus
CG14644-PB 225 CG14644-PB 1..220 92..310 579 50 Plus
CG14736-PF 335 CG14736-PF 1..186 130..315 496 51.6 Plus
Stoml2-PB 366 CG2970-PB 39..224 85..270 282 32.6 Plus
Stoml2-PA 366 CG2970-PA 39..224 85..270 282 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14311-PA 351 GI14311-PA 3..329 5..326 1345 78.3 Plus
Dmoj\GI14870-PA 339 GI14870-PA 40..318 42..319 1047 75.3 Plus
Dmoj\GI12741-PA 495 GI12741-PA 159..424 49..314 823 64 Plus
Dmoj\GI18479-PA 295 GI18479-PA 26..290 49..310 730 51.7 Plus
Dmoj\GI10271-PA 237 GI10271-PA 3..234 82..313 632 54.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12980-PA 369 GL12980-PA 17..369 6..350 1467 84 Plus
Dper\GL12979-PA 354 GL12979-PA 48..318 45..314 1016 76.4 Plus
Dper\GL17909-PA 617 GL17909-PA 246..512 52..314 818 64.6 Plus
Dper\GL22263-PA 393 GL22263-PA 61..335 38..314 759 52 Plus
Dper\GL17280-PA 310 GL17280-PA 46..305 52..310 732 51.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20495-PA 369 GA20495-PA 17..369 6..350 1468 84.8 Plus
Dpse\GA23068-PA 354 GA23068-PA 48..318 45..314 1016 76.4 Plus
Dpse\GA28535-PA 530 GA28535-PA 175..425 64..314 817 67.1 Plus
Dpse\GA27434-PA 393 GA27434-PA 73..335 52..314 761 52.9 Plus
Dpse\GA24162-PA 310 GA24162-PA 46..305 52..310 733 52.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22941-PA 261 GM22941-PA 2..259 56..313 1335 98.1 Plus
Dsec\GM22946-PA 363 GM22946-PA 44..324 33..319 1042 74 Plus
Dsec\GM22947-PA 255 GM22947-PA 1..204 1..203 1011 92.2 Plus
Dsec\GM14671-PA 414 GM14671-PA 22..334 13..314 819 57.4 Plus
Dsec\GM23997-PA 476 GM23997-PA 42..305 52..315 723 52.3 Plus
Dsec\GM22947-PA 255 GM22947-PA 189..255 284..350 339 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17429-PA 350 GD17429-PA 1..350 1..350 1834 98.3 Plus
Dsim\GD17427-PA 365 GD17427-PA 44..324 33..319 1042 74 Plus
Dsim\GD13852-PA 414 GD13852-PA 22..334 13..314 819 57.4 Plus
Dsim\GD18800-PA 475 GD18800-PA 43..306 52..315 714 51.5 Plus
Dsim\GD19693-PA 293 GD19693-PA 29..288 52..310 687 48.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19367-PA 347 GJ19367-PA 1..330 1..327 1422 81.7 Plus
Dvir\GJ19534-PA 352 GJ19534-PA 56..329 42..314 1052 77.4 Plus
Dvir\GJ15511-PA 412 GJ15511-PA 53..328 43..314 815 62.5 Plus
Dvir\GJ21340-PA 309 GJ21340-PA 40..304 49..310 734 51.7 Plus
Dvir\GJ11079-PA 317 GJ11079-PA 9..279 43..313 713 50.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25172-PA 345 GK25172-PA 7..345 4..350 1395 81.7 Plus
Dwil\GK25171-PA 359 GK25171-PA 57..328 44..314 1058 77.9 Plus
Dwil\GK16594-PA 513 GK16594-PA 122..419 21..314 823 59.5 Plus
Dwil\GK19470-PA 296 GK19470-PA 32..291 52..310 800 58.5 Plus
Dwil\GK19468-PA 296 GK19468-PA 32..291 52..310 800 58.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17776-PA 350 GE17776-PA 1..350 1..350 1829 97.7 Plus
Dyak\GE17775-PA 374 GE17775-PA 44..324 33..319 1042 74 Plus
Dyak\GE21459-PA 528 GE21459-PA 176..445 49..314 820 63.8 Plus
Dyak\GE26158-PA 491 GE26158-PA 40..302 52..314 703 50.2 Plus
Dyak\GE25367-PA 293 GE25367-PA 29..288 52..310 679 48.5 Plus