Clone SD05712 Report

Search the DGRC for SD05712

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:57
Well:12
Vector:pOT2
Associated Gene/Transcriptpar-1-RR
Protein status:SD05712.pep: gold
Preliminary Size:3382
Sequenced Size:3895

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8201 2003-08-02 Blastp of sequenced clone
par-1 2008-04-29 Release 5.5 accounting
par-1 2008-08-15 Release 5.9 accounting
par-1 2008-12-18 5.12 accounting

Clone Sequence Records

SD05712.complete Sequence

3895 bp (3895 high quality bases) assembled on 2003-08-02

GenBank Submission: BT009940

> SD05712.complete
CCCTGTTTAGCTTTGTTTTTCGGTGTCTTCTGTGTTTTGCTGTTTTTTGT
TGGTGTAAATCGTATAGTTGTAGTCGTAGCCTGTCGACGACGTTTACGTC
AGAGTTGCAGAGGAGGAGCTATAATTTATGTAAGAACAATAAACACGCCA
AGCGCAACTTGAAAAAGAAATAAGAAAAAAGAAAAAGTTGCGATCTCTCC
GAGCAACAAGTACTTGTGCACCAACACACTCAAGGGAAGAGTGCCACGAC
AAAAAAATTTAAGAGAAAAAAAACAGAAAAACCGAAATCAGCAGCAAAAC
GGAGGAGCTATGGAGGCCACCACTACCACAACACCTGACTTGAATCGCGG
CGATGCCACCAGGAAGAGTGTCCGGCTGTATGCCGCCCGCAAGGGGGCGG
CACCTGCGCCGCCCAAGCTCAGTGTGGCGCCATCTAGTAACCAGAACAGC
AACCACAGCAGCAACAACAACAATAGCAGCAGTAACTTGCCGGAAACGGA
AAAGGAAATGGAACTGCGTCAAACACATCTTGCCAACAAGGATCTCGATG
GAGCCACCGAAGACGACAGCATAGTGGAGCTTCGACGACGTGATGCCCAA
GCCACTCCATTGCCCAGGATAGCCGTATCGGCTCTACCCACCCTACAGCC
GCATCCCACGCCCAAAGAACGCCAAAAGCCGCCAATGCCACGCCTTCTGT
CCACCGAAGACGATGCCGGTGTGTCCTTTGCCCTCGGCTCCATCGAGAAG
CACATCCATAACGTGGAGGAGAGCTTTAAGCAACAGCAGCAAAACCAACA
ATCCCAATCATCGATGGACGTGATGAAACTGGAGATCAAGCGCAAGCAGA
GCAAGCGCTACGGTGAAACGGAAAACCTTCTGCGACCGGGCATTAGTGAC
ATGTCCTCCGAGAATGATTTTCAGTATTTGGGCGGCAGGCGGGCAGGAGA
ACTGGATGACAGCAATGAGCTGATGTTATCGGAATTCCAGCGCGGCAGCG
ATGGTCGTAACTCGATCGGAGCCTATTCCAAGAACTCGGCTGCTGCCGCA
AACGGAGCAAATGCTGTGAAGGCTAAACTGGCACGTACTGCCTCCGATAC
GAAGAATAATGATACGGTGCTGGCCATGAGGGCCACTTTTAAGCAGAAGC
AGCACTTGCAGGACGAGAAACAGCCAGCGGTATGGCGACCAGCTGGCACT
GGACCCACTCCGGCGGCCAGGAGCTCCTCCTCCACCACGTCCACCTCCGG
CTCGGCCAGTCGTGGCGGTAGCAGCAGCAGCGTGGTGGATGGAGTGGCTC
CATCTAAGCTTACGGCCACTACCATTTCAGCGTCTAAGCGGCGTGAGGAG
AATTTGCGACAATTTGAAGCTTTGTTGGCCCAAAAATCCTCACATCGTCA
TGGAGCATCTGGTGCCTCGGGAACAGGAAGTAATGCAGCCAGTTCGAAAA
GACGTTCGGACCGGCCGATTGTGGCTCCTATTCCTCCGTACAATTCCAGT
CGAGCAGAGCATGTGACCAGCTCGACCAGACACAGCGTTGATCCAAGATC
CCATTCGGGACACGAGTCGAGGTCAGGAACAGCCTCAACTCACCCGCCTG
TAGGACATCATCCCACTAGCCGCGTACCCAGCGTGGTGGCAAACCGCAGC
AATGTGTACAGCAACAATGCTGCGCAGGGTTCGCCTAACATGCAAATGCG
GAGTAGTGCTCCTATGCGATGGCGTGCTACTGAGGAGCATATTGGCAAAT
ACAAACTCATAAAGACGATCGGCAAGGGCAATTTTGCCAAGGTGAAACTA
GCGAAACACCTGCCCACTGGCAAGGAGGTCGCCATCAAGATAATTGACAA
GACCCAACTCAATCCTGGGTCACTACAGAAACTCTTTAGAGAGGTTAGAA
TAATGAAGATGCTGGATCACCCCAACATAGTTAAATTGTTCCAAGTAATC
GAAACGGAGAAGACGCTCTATCTGATCATGGAGTACGCATCTGGCGGAGA
AGTCTTCGACTACCTGGTTCTCCACGGACGCATGAAGGAGAAGGAGGCGC
GAGTTAAGTTTCGACAAATCGTCTCAGCCGTGCAATATTGTCATCAAAAA
AGAATAATTCACAGGGACTTAAAAGCTGAAAACCTTTTGCTGGACAGCGA
ACTGAACATCAAAATCGCTGACTTTGGCTTTTCGAACGAGTTCACACCCG
GCTCAAAGCTGGACACGTTCTGCGGTAGCCCGCCATATGCGGCACCGGAG
CTGTTTCAGGGCAAAAAGTACGACGGACCGGAGGTCGATGTTTGGTCGCT
GGGCGTCATCCTGTATACGTTAGTGAGCGGTTCCCTGCCCTTCGACGGCT
CCACCTTGAGGGAGTTGCGTGAACGCGTGCTCAGAGGCAAATATAGAATT
CCCTTCTATATGTCGACTGACTGCGAAAACTTGCTCCGCAAATTCTTAGT
ACTGAATCCCGCAAAGCGTGCTAGTCTGGAAACAATCATGGGCGACAAGT
GGATGAACATGGGGTTTGAGGAGGACGAACTCAAGCCCTATATTGAGCCC
AAAGCCGATTTAGCCGATCCCAAGCGGATAGAAGCTCTAGTCGCGATGGG
CTACAATCGATCGGAGATCGAGGCTTCGCTCTCCCAGGTGCGCTACGACG
ATGTTTTCGCCACATATTTGCTGCTGGGTCGCAAGAGTACAGACCCGGAA
AGTGACGGATCGCGGTCTGGCTCCTCGCTCTCACTGCGCAACATCTCGGG
TAATGATGCGGGCGCCAATGCTGGTAGTGCGAGTGTTCAGAGTCCCACGC
ACAGAGGAGTCCACAGGAGCATATCGGCGTCTAGCACGAAGCCAAGTCGC
CGAGCCTCGTCTGGTGTTGGACCGACAAATGCGGCAGCAACAGTTGCGGC
GGCCACGGGAGCCGTTGGTGCGGTTAATCCAAGCAATAACTACAATGCTG
CAGGATCAGCGGCGGATCGAGCATCAGTTGGCAGCAACTTTAAGCGACAG
AACACAATCGACTCGGCTACGATTAAGGAGAACACAGCGCGACTGGCCGC
TCAAAATCAGAGACCCGCTTCGGCCACACAAAAGATGCTCACCACGGCAG
ACACCACACTGAACAGTCCCGCCAAGCCGCGAACGGCAACGAAGTACGAT
CCGACGAATGGCAATCGCACGGTCAGCGGCACAAGTGGCATCATTCCACG
TCGCTCCACCACGCTTTATGAAAAGACTTCGTCGACGGAGAAAACCAACG
TTATTCCTGCAGAGACAAAACACTTTCCAAGGAATGTTCCATCACGTTCA
ACCTTTCACTCTGGTCAAACCAGAGCACGAAACAACACAGCGCTGGAATA
CTCGGGCACCAGCGGTGCCTCCGGCGACTCCTCCCATCCGGGTCGCATGA
GCTTCTTCTCCAAACTCTCCTCACGTTTTAGCAAACGGCCAAACCAGTAA
TTAACAAAACAAGCATTAACTACTTCTTGTTAATAGTTCTAAAACTGAAA
CTGAAACAAACGATTCCCCTAGAGTAAACGCGCGTGACGGAGAGGTTCAG
ATATGAACAGACAGACACAGATATGGTCGAATCCAATCGGATCGCTCGGA
TCGGATCAGATCGGGAAACGATACTGTTCACGTTGCCGTTGCCGATCCGA
AATCGCTTTCGAATTCCATTTCGAGTTCAGATCCGTTTCCGGTTTCGATT
CGAACCCCTTCAAATGAACACCGACAACGTTGAGTTCCATTGCGTTAATT
GAAATTTCACAAATACGCCTATGTTTTATTACAATTATTAACTAATTATA
CATATAAATTTATATAAATTAAAGATACATATACATATATTTAAAAGTAA
AGCAACCACAAACAGAAATTAAAAAAAAAAAAAAAAAAAAAAAAA

SD05712.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RC 4948 par-1-RC 45..2910 1..2866 14330 100 Plus
par-1.f 4529 par-1.f 45..2910 1..2866 14330 100 Plus
par-1.c 4689 par-1.c 45..2910 1..2866 14330 100 Plus
par-1-RC 4948 par-1-RC 3356..3957 3270..3871 2995 99.8 Plus
par-1.f 4529 par-1.f 3356..3957 3270..3871 2995 99.8 Plus
par-1.c 4689 par-1.c 3356..3957 3270..3871 2995 99.8 Plus
par-1-RC 4948 par-1-RC 2923..3329 2864..3270 2035 100 Plus
par-1.f 4529 par-1.f 2923..3329 2864..3270 2035 100 Plus
par-1.c 4689 par-1.c 2923..3329 2864..3270 2035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15355950..15357499 129..1678 7750 100 Plus
chr2R 21145070 chr2R 15368313..15368746 3437..3870 2155 99.8 Plus
chr2R 21145070 chr2R 15358365..15358650 2111..2396 1430 100 Plus
chr2R 21145070 chr2R 15358030..15358253 1892..2115 1120 100 Plus
chr2R 21145070 chr2R 15357754..15357975 1675..1896 1110 100 Plus
chr2R 21145070 chr2R 15358710..15358896 2395..2581 935 100 Plus
chr2R 21145070 chr2R 15360156..15360327 2695..2866 860 100 Plus
chr2R 21145070 chr2R 15360965..15361127 3107..3269 815 100 Plus
chr2R 21145070 chr2R 15354674..15354801 1..128 640 100 Plus
chr2R 21145070 chr2R 15360773..15360900 2979..3106 640 100 Plus
chr2R 21145070 chr2R 15365905..15366030 3313..3438 630 100 Plus
chr2R 21145070 chr2R 15359976..15360091 2579..2694 580 100 Plus
chr2R 21145070 chr2R 15360599..15360714 2863..2978 580 100 Plus
chr3R 27901430 chr3R 7175128..7175846 2468..1750 280 69.3 Minus
chr2R 21145070 chr2R 15364825..15364870 3270..3315 230 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:49:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19468790..19470339 129..1678 7750 100 Plus
2R 25286936 2R 19481150..19481584 3437..3871 2160 99.8 Plus
2R 25286936 2R 19471205..19471490 2111..2396 1430 100 Plus
2R 25286936 2R 19470870..19471093 1892..2115 1120 100 Plus
2R 25286936 2R 19470594..19470815 1675..1896 1110 100 Plus
2R 25286936 2R 19471550..19471736 2395..2581 935 100 Plus
2R 25286936 2R 19472996..19473167 2695..2866 860 100 Plus
2R 25286936 2R 19473805..19473967 3107..3269 815 100 Plus
2R 25286936 2R 19473613..19473740 2979..3106 640 100 Plus
2R 25286936 2R 19467514..19467641 1..128 640 100 Plus
2R 25286936 2R 19478741..19478866 3313..3438 630 100 Plus
2R 25286936 2R 19472816..19472931 2579..2694 580 100 Plus
2R 25286936 2R 19473439..19473554 2863..2978 580 100 Plus
3R 32079331 3R 11349636..11350354 2468..1750 280 69.3 Minus
2R 25286936 2R 19477661..19477706 3270..3315 230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19469989..19471538 129..1678 7750 100 Plus
2R 25260384 2R 19482349..19482783 3437..3871 2160 99.7 Plus
2R 25260384 2R 19472404..19472689 2111..2396 1430 100 Plus
2R 25260384 2R 19472069..19472292 1892..2115 1120 100 Plus
2R 25260384 2R 19471793..19472014 1675..1896 1110 100 Plus
2R 25260384 2R 19472749..19472935 2395..2581 935 100 Plus
2R 25260384 2R 19474195..19474366 2695..2866 860 100 Plus
2R 25260384 2R 19475004..19475166 3107..3269 815 100 Plus
2R 25260384 2R 19468713..19468840 1..128 640 100 Plus
2R 25260384 2R 19474812..19474939 2979..3106 640 100 Plus
2R 25260384 2R 19479940..19480065 3313..3438 630 100 Plus
2R 25260384 2R 19474638..19474753 2863..2978 580 100 Plus
2R 25260384 2R 19474015..19474130 2579..2694 580 100 Plus
3R 31820162 3R 11090467..11090728 2468..2207 275 73.6 Minus
2R 25260384 2R 19478860..19478905 3270..3315 230 100 Plus
Blast to na_te.dros performed 2019-03-16 18:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1569 433..486 180 81.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6848 445..529 161 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6794 433..514 159 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6842 439..486 159 81.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2427 427..486 153 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2455 440..571 150 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6828 445..527 150 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2421 445..486 147 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6931 436..552 147 63.6 Plus
roo 9092 roo DM_ROO 9092bp 1108..1163 424..480 147 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1586 436..482 145 78.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2403 445..529 143 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2631..2673 439..480 140 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6773 434..486 139 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2832 436..480 135 77.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2389..2443 436..487 133 74.5 Plus
roo 9092 roo DM_ROO 9092bp 1107..1200 436..527 132 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6862..6914 434..486 130 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2440..2490 436..486 129 72.5 Plus
roo 9092 roo DM_ROO 9092bp 1095..1145 436..486 129 72.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2823 448..486 123 79.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3269..3322 429..481 123 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6840..6926 445..532 122 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6966 456..703 121 57.4 Plus
BS 5142 BS BS 5142bp 2028..2080 436..488 121 69.8 Plus
X-element 4740 X-element ROXELEMENT 4740bp 1695..1769 724..800 119 63.6 Plus

SD05712.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:11 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15365906..15366029 3314..3437 100 -> Plus
chr2R 15360773..15360900 2979..3106 100 -> Plus
chr2R 15360965..15361127 3107..3269 100 -> Plus
chr2R 15364825..15364868 3270..3313 100 -> Plus
chr2R 15354674..15354801 1..128 100 -> Plus
chr2R 15355950..15357498 129..1677 96 -> Plus
chr2R 15357757..15357972 1678..1893 100 -> Plus
chr2R 15358032..15358252 1894..2114 100 -> Plus
chr2R 15358369..15358650 2115..2396 100 -> Plus
chr2R 15358712..15358896 2397..2581 100 -> Plus
chr2R 15359979..15360091 2582..2694 100 -> Plus
chr2R 15360156..15360324 2695..2863 100 -> Plus
chr2R 15360600..15360714 2864..2978 100 -> Plus
chr2R 15368314..15368649 3438..3773 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:19:45 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RD 1..2976 310..3271 99 <- Plus
par-1-RD 3005..3183 3272..3450 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:11:23 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RM 1..2976 310..3271 99 <- Plus
par-1-RM 3005..3183 3272..3450 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:44 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RR 1..3141 310..3450 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:23 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RD 3005..3183 3272..3450 100   Plus
par-1-RD 1..2976 310..3271 99 <- Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:10 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RR 1..3141 310..3450 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:19:44 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RC 1..3285 1..3271 99 <- Plus
par-1-RC 3314..3912 3272..3870 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:11:23 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RM 1..3285 1..3271 99 <- Plus
par-1-RM 3314..3912 3272..3870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:44 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RR 49..3918 1..3870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:23 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RC 1..3285 1..3271 99 <- Plus
par-1-RC 3314..3912 3272..3870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:10 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RR 49..3918 1..3870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:11 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19473613..19473740 2979..3106 100 -> Plus
2R 19473805..19473967 3107..3269 100 -> Plus
2R 19477661..19477704 3270..3313 100 -> Plus
2R 19478742..19478865 3314..3437 100 -> Plus
2R 19467514..19467641 1..128 100 -> Plus
2R 19468790..19470338 129..1677 100 -> Plus
2R 19470597..19470812 1678..1893 100 -> Plus
2R 19470872..19471092 1894..2114 100 -> Plus
2R 19471209..19471490 2115..2396 100 -> Plus
2R 19471552..19471736 2397..2581 100 -> Plus
2R 19472819..19472931 2582..2694 100 -> Plus
2R 19472996..19473164 2695..2863 100 -> Plus
2R 19473440..19473554 2864..2978 100 -> Plus
2R 19481151..19481583 3438..3870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:11 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19473613..19473740 2979..3106 100 -> Plus
2R 19473805..19473967 3107..3269 100 -> Plus
2R 19477661..19477704 3270..3313 100 -> Plus
2R 19478742..19478865 3314..3437 100 -> Plus
2R 19467514..19467641 1..128 100 -> Plus
2R 19468790..19470338 129..1677 100 -> Plus
2R 19470597..19470812 1678..1893 100 -> Plus
2R 19470872..19471092 1894..2114 100 -> Plus
2R 19471209..19471490 2115..2396 100 -> Plus
2R 19471552..19471736 2397..2581 100 -> Plus
2R 19472819..19472931 2582..2694 100 -> Plus
2R 19472996..19473164 2695..2863 100 -> Plus
2R 19473440..19473554 2864..2978 100 -> Plus
2R 19481151..19481583 3438..3870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:11 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19473613..19473740 2979..3106 100 -> Plus
2R 19473805..19473967 3107..3269 100 -> Plus
2R 19477661..19477704 3270..3313 100 -> Plus
2R 19478742..19478865 3314..3437 100 -> Plus
2R 19467514..19467641 1..128 100 -> Plus
2R 19468790..19470338 129..1677 100 -> Plus
2R 19470597..19470812 1678..1893 100 -> Plus
2R 19470872..19471092 1894..2114 100 -> Plus
2R 19471209..19471490 2115..2396 100 -> Plus
2R 19471552..19471736 2397..2581 100 -> Plus
2R 19472819..19472931 2582..2694 100 -> Plus
2R 19472996..19473164 2695..2863 100 -> Plus
2R 19473440..19473554 2864..2978 100 -> Plus
2R 19481151..19481583 3438..3870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:44 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15355019..15355146 1..128 100 -> Plus
arm_2R 15356295..15357843 129..1677 100 -> Plus
arm_2R 15358102..15358317 1678..1893 100 -> Plus
arm_2R 15358377..15358597 1894..2114 100 -> Plus
arm_2R 15358714..15358995 2115..2396 100 -> Plus
arm_2R 15359057..15359241 2397..2581 100 -> Plus
arm_2R 15360324..15360436 2582..2694 100 -> Plus
arm_2R 15360501..15360669 2695..2863 100 -> Plus
arm_2R 15360945..15361059 2864..2978 100 -> Plus
arm_2R 15361118..15361245 2979..3106 100 -> Plus
arm_2R 15361310..15361472 3107..3269 100 -> Plus
arm_2R 15365166..15365209 3270..3313 100 -> Plus
arm_2R 15366247..15366370 3314..3437 100 -> Plus
arm_2R 15368656..15369088 3438..3870 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:03 Download gff for SD05712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19468713..19468840 1..128 100 -> Plus
2R 19474812..19474939 2979..3106 100 -> Plus
2R 19472751..19472935 2397..2581 100 -> Plus
2R 19474018..19474130 2582..2694 100 -> Plus
2R 19474195..19474363 2695..2863 100 -> Plus
2R 19474639..19474753 2864..2978 100 -> Plus
2R 19469989..19471537 129..1677 100 -> Plus
2R 19471796..19472011 1678..1893 100 -> Plus
2R 19472071..19472291 1894..2114 100 -> Plus
2R 19472408..19472689 2115..2396 100 -> Plus
2R 19475004..19475166 3107..3269 100 -> Plus
2R 19478860..19478903 3270..3313 100 -> Plus
2R 19479941..19480064 3314..3437 100 -> Plus
2R 19482350..19482782 3438..3870 99   Plus

SD05712.pep Sequence

Translation from 309 to 3449

> SD05712.pep
MEATTTTTPDLNRGDATRKSVRLYAARKGAAPAPPKLSVAPSSNQNSNHS
SNNNNSSSNLPETEKEMELRQTHLANKDLDGATEDDSIVELRRRDAQATP
LPRIAVSALPTLQPHPTPKERQKPPMPRLLSTEDDAGVSFALGSIEKHIH
NVEESFKQQQQNQQSQSSMDVMKLEIKRKQSKRYGETENLLRPGISDMSS
ENDFQYLGGRRAGELDDSNELMLSEFQRGSDGRNSIGAYSKNSAAAANGA
NAVKAKLARTASDTKNNDTVLAMRATFKQKQHLQDEKQPAVWRPAGTGPT
PAARSSSSTTSTSGSASRGGSSSSVVDGVAPSKLTATTISASKRREENLR
QFEALLAQKSSHRHGASGASGTGSNAASSKRRSDRPIVAPIPPYNSSRAE
HVTSSTRHSVDPRSHSGHESRSGTASTHPPVGHHPTSRVPSVVANRSNVY
SNNAAQGSPNMQMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKVKLAKH
LPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVKLFQVIETE
KTLYLIMEYASGGEVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRII
HRDLKAENLLLDSELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQ
GKKYDGPEVDVWSLGVILYTLVSGSLPFDGSTLRELRERVLRGKYRIPFY
MSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELKPYIEPKAD
LADPKRIEALVAMGYNRSEIEASLSQVRYDDVFATYLLLGRKSTDPESDG
SRSGSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRAS
SGVGPTNAAATVAAATGAVGAVNPSNNYNAAGSAADRASVGSNFKRQNTI
DSATIKENTARLAAQNQRPASATQKMLTTADTTLNSPAKPRTATKYDPTN
GNRTVSGTSGIIPRRSTTLYEKTSSTEKTNVIPAETKHFPRNVPSRSTFH
SGQTRARNNTALEYSGTSGASGDSSHPGRMSFFSKLSSRFSKRPNQ*

SD05712.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11717-PA 1419 GF11717-PA 1..1107 1..1043 4268 83 Plus
Dana\GF18162-PA 741 GF18162-PA 134..723 479..1043 1322 46.8 Plus
Dana\GF21982-PA 1480 GF21982-PA 134..454 468..789 1012 56 Plus
Dana\GF12120-PA 692 GF12120-PA 38..374 478..792 903 49.3 Plus
Dana\GF10369-PA 863 GF10369-PA 13..345 476..796 783 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21978-PA 1223 GG21978-PA 1..1117 1..1044 4761 90.8 Plus
Dere\GG17227-PA 712 GG17227-PA 102..694 479..1043 1310 47.2 Plus
Dere\GG17228-PA 585 GG17228-PA 61..372 479..789 1223 67 Plus
Dere\GG12656-PA 1421 GG12656-PA 135..460 463..789 1015 54.8 Plus
Dere\GG21916-PA 699 GG21916-PA 38..377 478..792 881 48.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20210-PA 1146 GH20210-PA 3..1037 6..1043 3724 73.6 Plus
Dgri\GH24031-PA 711 GH24031-PA 104..502 479..877 1303 59 Plus
Dgri\GH24405-PA 1622 GH24405-PA 125..454 459..789 1018 54.3 Plus
Dgri\GH20038-PA 719 GH20038-PA 31..368 478..792 904 49.6 Plus
Dgri\GH14360-PA 865 GH14360-PA 13..345 476..796 783 46.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-PR 1046 CG8201-PR 1..1046 1..1046 5323 100 Plus
par-1-PT 1058 CG8201-PT 1..1058 1..1046 5289 98.9 Plus
par-1-PP 1141 CG8201-PP 1..1034 1..1044 5153 97.5 Plus
par-1-PS 827 CG8201-PS 27..827 234..1046 3048 77 Plus
par-1-PL 833 CG8201-PL 27..833 234..1046 3039 76.3 Plus
par-1-PW 832 CG8201-PW 27..832 234..1046 3032 76.5 Plus
par-1-PX 1170 CG8201-PX 27..831 234..1044 3028 76.3 Plus
par-1-PA 938 CG8201-PA 27..831 234..1044 3028 76.3 Plus
par-1-PH 993 CG8201-PH 329..993 436..1046 2941 89.5 Plus
par-1-PV 951 CG8201-PV 27..844 234..1044 2891 73.3 Plus
KP78a-PB 705 CG6715-PB 96..687 479..1043 1267 45.3 Plus
KP78b-PB 604 CG17216-PB 4..586 404..1043 1178 41 Plus
KP78b-PA 604 CG17216-PA 4..586 404..1043 1178 41 Plus
Sik2-PA 1398 CG4290-PA 138..507 478..851 938 50.4 Plus
Sik3-PA 702 CG15072-PA 38..442 478..859 842 43 Plus
Sik3-PF 1379 CG42856-PF 38..442 478..859 842 43 Plus
Sik3-PE 1382 CG42856-PE 38..442 478..859 842 43 Plus
Sik3-PD 1468 CG42856-PD 38..442 478..859 842 43 Plus
Sik3-PC 1471 CG18604-PA 38..442 478..859 842 43 Plus
Sik3-PB 1471 CG15072-PB 38..442 478..859 842 43 Plus
sff-PB 845 CG6114-PB 13..524 476..963 747 35.8 Plus
sff-PC 851 CG6114-PC 13..524 476..963 747 35.8 Plus
sff-PA 861 CG6114-PA 13..524 476..963 747 35.8 Plus
CG8485-PC 860 CG8485-PC 18..511 479..986 710 33.5 Plus
CG8485-PB 860 CG8485-PB 18..511 479..986 710 33.5 Plus
CG8485-PA 860 CG8485-PA 18..511 479..986 710 33.5 Plus
AMPKalpha-PC 582 CG3051-PC 25..339 478..789 656 42.9 Plus
AMPKalpha-PB 582 CG3051-PB 25..339 478..789 656 42.9 Plus
AMPKalpha-PA 582 CG3051-PA 25..339 478..789 656 42.9 Plus
CG43143-PD 1180 CG11870-PD 29..350 422..763 631 40.8 Plus
CG43143-PG 1199 CG43143-PG 29..350 422..763 631 40.8 Plus
CG43143-PB 1427 CG11870-PB 29..350 422..763 631 40.8 Plus
CG43143-PC 1427 CG11870-PC 29..350 422..763 631 40.8 Plus
CG43143-PA 1427 CG11870-PA 29..350 422..763 631 40.8 Plus
CG43143-PF 1532 CG43143-PF 29..350 422..763 631 40.8 Plus
CG43143-PH 1551 CG43143-PH 29..350 422..763 631 40.8 Plus
CG43143-PE 2537 CG43143-PE 29..350 422..763 631 40.8 Plus
CG43143-PI 2556 CG43143-PI 29..350 422..763 631 40.8 Plus
CG4629-PF 570 CG4629-PF 63..321 478..732 563 42.1 Plus
CG4629-PE 570 CG4629-PE 63..321 478..732 563 42.1 Plus
CG9222-PA 337 CG9222-PA 80..332 485..731 451 39.2 Plus
grp-PA 512 CG17161-PA 14..355 473..795 445 34.6 Plus
grp-PB 512 CG17161-PB 14..355 473..795 445 34.6 Plus
grp-PC 512 CG17161-PC 14..355 473..795 445 34.6 Plus
PhKgamma-PE 560 CG1830-PE 15..407 473..864 441 31.1 Plus
PhKgamma-PD 560 CG1830-PD 15..407 473..864 441 31.1 Plus
PhKgamma-PH 419 CG1830-PH 15..311 473..749 435 36 Plus
PhKgamma-PB 419 CG1830-PB 15..311 473..749 435 36 Plus
CaMKI-PI 390 CG1495-PI 30..288 480..733 432 38.2 Plus
PhKgamma-PF 391 CG1830-PF 15..292 473..733 430 36 Plus
Pka-C1-PD 353 CG4379-PD 32..299 470..731 422 34.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20735-PA 1228 GI20735-PA 3..1120 6..1043 3782 71.6 Plus
Dmoj\GI15425-PA 1432 GI15425-PA 129..458 459..789 1018 54.5 Plus
Dmoj\GI19215-PA 714 GI19215-PA 27..375 478..792 898 47.3 Plus
Dmoj\GI20450-PA 855 GI20450-PA 19..335 479..787 718 41.9 Plus
Dmoj\GI16329-PA 589 GI16329-PA 31..329 478..774 700 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10531-PA 1212 GL10531-PA 3..1104 8..1043 4192 80.5 Plus
Dper\GL12610-PA 733 GL12610-PA 122..433 479..789 1299 69.9 Plus
Dper\GL15126-PA 1366 GL15126-PA 128..458 458..789 1019 54.8 Plus
Dper\GL10764-PA 617 GL10764-PA 44..299 478..733 876 57.8 Plus
Dper\GL10204-PA 843 GL10204-PA 20..339 481..790 721 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24400-PA 1212 GA24400-PA 3..1104 8..1043 4205 80.6 Plus
Dpse\GA19806-PA 735 GA19806-PA 122..433 479..789 1301 70.2 Plus
Dpse\GA18086-PA 1445 GA18086-PA 130..460 458..789 1017 54.8 Plus
Dpse\GA24476-PA 712 GA24476-PA 47..301 478..732 877 58 Plus
Dpse\GA23557-PA 866 GA23557-PA 13..345 476..796 787 46.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21966-PA 1192 GM21966-PA 1..1085 1..1044 4731 90.7 Plus
Dsec\GM26104-PA 705 GM26104-PA 96..687 479..1043 1299 45.5 Plus
Dsec\GM26105-PA 603 GM26105-PA 61..585 479..1043 1219 43.9 Plus
Dsec\GM18924-PA 1329 GM18924-PA 134..396 463..732 979 61.1 Plus
Dsec\GM21908-PA 703 GM21908-PA 38..377 478..792 884 48.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20665-PA 603 GD20665-PA 61..436 479..855 1219 56.9 Plus
Dsim\GD20664-PA 558 GD20664-PA 1..540 531..1043 1088 42.9 Plus
Dsim\GD12530-PA 680 GD12530-PA 119..451 476..796 785 46.8 Plus
Dsim\GD25693-PA 864 GD25693-PA 18..338 479..787 745 42.4 Plus
Dsim\GD11403-PA 283 GD11403-PA 33..279 478..702 679 52.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20472-PA 1208 GJ20472-PA 27..1100 10..1043 3861 74.8 Plus
Dvir\GJ23798-PA 756 GJ23798-PA 128..440 479..790 1304 70.9 Plus
Dvir\GJ16386-PA 1350 GJ16386-PA 54..434 411..789 1018 49.7 Plus
Dvir\GJ20287-PA 715 GJ20287-PA 27..282 478..733 892 58.6 Plus
Dvir\GJ14109-PA 857 GJ14109-PA 13..345 476..796 781 46.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15874-PA 1239 GK15874-PA 22..1131 10..1043 3829 74 Plus
Dwil\GK11799-PA 719 GK11799-PA 113..701 479..1043 1323 45.7 Plus
Dwil\GK25743-PA 1437 GK25743-PA 154..483 459..789 1024 54 Plus
Dwil\GK20917-PA 755 GK20917-PA 46..300 478..732 880 58 Plus
Dwil\GK20597-PA 874 GK20597-PA 13..345 476..796 778 46.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12057-PA 1211 GE12057-PA 1..1104 1..1044 4776 89.8 Plus
Dyak\GE24627-PA 709 GE24627-PA 100..691 479..1043 1311 46.4 Plus
Dyak\GE24628-PA 600 GE24628-PA 45..372 457..789 1223 63.8 Plus
Dyak\GE16985-PA 1400 GE16985-PA 133..458 463..789 1013 54.8 Plus
Dyak\GE11992-PA 704 GE11992-PA 38..377 478..792 885 48.5 Plus

SD05712.hyp Sequence

Translation from 309 to 3449

> SD05712.hyp
MEATTTTTPDLNRGDATRKSVRLYAARKGAAPAPPKLSVAPSSNQNSNHS
SNNNNSSSNLPETEKEMELRQTHLANKDLDGATEDDSIVELRRRDAQATP
LPRIAVSALPTLQPHPTPKERQKPPMPRLLSTEDDAGVSFALGSIEKHIH
NVEESFKQQQQNQQSQSSMDVMKLEIKRKQSKRYGETENLLRPGISDMSS
ENDFQYLGGRRAGELDDSNELMLSEFQRGSDGRNSIGAYSKNSAAAANGA
NAVKAKLARTASDTKNNDTVLAMRATFKQKQHLQDEKQPAVWRPAGTGPT
PAARSSSSTTSTSGSASRGGSSSSVVDGVAPSKLTATTISASKRREENLR
QFEALLAQKSSHRHGASGASGTGSNAASSKRRSDRPIVAPIPPYNSSRAE
HVTSSTRHSVDPRSHSGHESRSGTASTHPPVGHHPTSRVPSVVANRSNVY
SNNAAQGSPNMQMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKVKLAKH
LPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVKLFQVIETE
KTLYLIMEYASGGEVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRII
HRDLKAENLLLDSELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQ
GKKYDGPEVDVWSLGVILYTLVSGSLPFDGSTLRELRERVLRGKYRIPFY
MSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELKPYIEPKAD
LADPKRIEALVAMGYNRSEIEASLSQVRYDDVFATYLLLGRKSTDPESDG
SRSGSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRAS
SGVGPTNAAATVAAATGAVGAVNPSNNYNAAGSAADRASVGSNFKRQNTI
DSATIKENTARLAAQNQRPASATQKMLTTADTTLNSPAKPRTATKYDPTN
GNRTVSGTSGIIPRRSTTLYEKTSSTEKTNVIPAETKHFPRNVPSRSTFH
SGQTRARNNTALEYSGTSGASGDSSHPGRMSFFSKLSSRFSKRPNQ*

SD05712.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-PR 1046 CG8201-PR 1..1046 1..1046 5323 100 Plus
par-1-PT 1058 CG8201-PT 1..1058 1..1046 5289 98.9 Plus
par-1-PP 1141 CG8201-PP 1..1034 1..1044 5153 97.5 Plus
par-1-PS 827 CG8201-PS 27..827 234..1046 3048 77 Plus
par-1-PL 833 CG8201-PL 27..833 234..1046 3039 76.3 Plus