Clone SD05789 Report

Search the DGRC for SD05789

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:57
Well:89
Vector:pOT2
Associated Gene/TranscriptCG12016-RA
Protein status:SD05789.pep2: gold SD05789.pep: gold
Preliminary Size:2353
Sequenced Size:2330

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12016 2001-07-04 Blastp of sequenced clone
CG12016 2003-01-01 Sim4 clustering to Release 3
CG12016 2008-04-29 Release 5.5 accounting
CG12016 2008-08-15 Release 5.9 accounting
CG42456 2008-12-18 5.12 accounting
CG12016 2008-12-18 5.12 accounting
Dpm2 2020-09-28 Sue said so

Clone Sequence Records

SD05789.complete Sequence

2330 bp (2330 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060471.1

> SD05789.complete
TGAATTCGGAAATTTTTTGACGCACTTGTTTGTTTTGTTTACAATTACGC
CACGAAAGTAAATCGGCAGCTACGAAAAAACATTAGGGATTCGTGCGGCG
GGTAAACGATCAGTGGACAGTGAAGCAGTCCGTCCGGGGAGAACGCCCCA
TGAGCAGTTTTACAAACAAATCGCCGGTCGCGTGTTCTCTCGCCAGAGAA
ACCCCAGAATTTCCGAGAATAGCTATTTATGGCTTCGAATGCGCAACTCG
GGAAAATCATTTTGATATCTGCAATCGCCGTGTTCTTCTATTACTTCTTT
TGGGTGGCCGTCCTCCCGTTTATGCTCATCGATGAAGGCAATCCCATTCG
GCTGTTCTTTCCACCGCTGAAGTACGCTTTCATTGTGCCCACCGTGTTCG
GGGTGATCTTCCTCGGCGGCATCGCCGCGTTCTCCTTTTACCACATCTGG
AGCCTGAGAGTGAAACGTGATTAAGGGGGTTATCCGGGGGGTTATCTTGC
GCGGTGCGAACGCGAACGTACGATTCCACTGAAAAACAAGGAAGAGCGAT
AGTCAGTCGTGGACAAGATGCCGCAGTGGCTGGTCATTGGTATCTCGGGT
GTCACCTGTGGTGGCAAAACGACGCTAGCCCACAGCCTGCACGACTACTT
CAAGGGTCTGAGAGGAGCGCCGCTGTGGAACTCGCCGTACACCATTGGCG
AGGTGCGTCTGATCTCGCAGGATGACTACTTTCTGCCCGTGGAGGACAAG
CGACATCAGCGAAATGAGGCGCTCAACGCCATCAACTTCGAGCTCATCAC
CTCGCTGGACATGGCCAAGATGCTGAACGACATAGCGCACATAATCAAGG
GGCGCCATGTGGCTCCCGAGCCACAGGAGCACCTTGTGACGTATGCCAAC
TTCGAGCACTACGCCCAGCAGTTCCAGCAGCAGTACCAGTACAATGCGAA
CTACTACAAACAGGCCAATGGCGGGGTCTATCAATATCCGCCACAGCAGC
ACCCGAGACATCACCCCCATCACCAGCAGCACCACCACCAGCACCATCAA
ATCCAGCAGCAGCAGCAGCACATTATGAGCATCAATGCGCAGATTGCCGC
CCAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGA
TCTTCAACCAGCCGGAGCTGCTGGCCCTGTGCAACATTAAGTACCACTTC
CATCTGCCATATGAGAAGTGCTTCGAACGGCGCAGTAAGCGCACATACGA
TCCACCCGATGTCACGGGCTACTTCGAGCTCTGTGTGTGGCCGCACTATG
AAAAGAACTTCAGCGAGTACCGCGACTGCAAGGACATTACATTCCTCAAT
GGCGAGATCGCCAAAGAGAAGATCCTCGCGTTCGTCCTTCATCGCATCGT
CCACTACTTCAAGGAGCGCTGCGAGGTTCCAGCTCCTGCTCCCGTCGTCT
GCCCGCCGCAGCAGAAACGGTTCGGGATGCTCTACATGGGTCCGAGCAAT
AACAACGTCATGCCGTCGGCGTGTCCCATGGAGCAATAGTTTGTCCTTGG
ATTCAGAGTACAATAATTGAATATTGTATAGTAGTAGGATGTTAAACGGT
TCAAAATTGTTTGGATTACTTCTCCGAATCGTGGCTAAAATTCCCATATT
ACGTTATAGTTGTAAGCTACTCTAAGGGTGGTTCGATTTTAAATTGTTAA
AAGTATGATCTAAAATCAATTATTTAATTCAAATTAAAAATGTGAGTTTT
TGGAACTTGAGCAAATTTTAAGCACCGCAAAGTCCAAAGAAAAGTGCAGT
ATTGTTTAGAGAATATTTTGATTGTTTGATTGCCCAACCTACAACTTCCA
CGACCAATTTGCTTACAGTTTCTATCTTCTTTTTACGGAACAATCGAAAC
AAATCGACCCGCCCTAGAATACAACTATTATTAGTTAGTCTTTATTTCGT
ATTAAGATAGTTATTATGGGTGACATGGTCTCTCTTGTGGAGAATGCTCT
TGTAACCAGATTGTGAAATGAAGAAACTCGGTTCAGGAATTCATATTTAG
CTGTGCTAACTATTATATTGTATTGTTTACTATTACGTCATGGAATTTAG
AAAAACCCCAACGAGGCATTTGGTGTGGGGCGTTTTTATGGAGTCGAAAA
GTTATTGTACTATATAATGGATATTTATATATGCACCTTGTAAATACCGT
AGTGTATATTTACCAAATTAAACCTAGCTTTAAGACTATGACCTAAAAGA
ATTATATATTTTTTTCTTGTGCGAAACAAAACACACATACGAATAAACAG
ACATTTAACCTCAAAAAAAAAAAAAAAAAA

SD05789.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-RA 2324 CG12016-RA 13..2324 1..2312 11455 99.6 Plus
CG42456-RA 2312 CG42456-RA 1..2312 1..2312 11455 99.6 Plus
CG12016-RB 1995 CG12016-RB 21..1995 338..2312 9770 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3319923..3321899 336..2312 9855 99.9 Plus
chr3L 24539361 chr3L 3318979..3319316 1..338 1645 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:49:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3320513..3322491 336..2314 9790 99.6 Plus
3L 28110227 3L 3319569..3319906 1..338 1690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3320513..3322491 336..2314 9790 99.6 Plus
3L 28103327 3L 3319569..3319906 1..338 1690 100 Plus
Blast to na_te.dros performed 2019-03-16 18:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 2961..3025 1691..1755 127 70.1 Plus

SD05789.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:37 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3318979..3319315 1..337 99 -> Plus
chr3L 3319925..3320580 338..993 99 == Plus
chr3L 3320658..3321899 1071..2312 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:01:33 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RB 1..972 568..1539 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:59 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RB 1..972 568..1539 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:12 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 1..972 568..1539 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:16 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RB 1..972 568..1539 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:05 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 1..972 568..1539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:47 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 1..2312 1..2312 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:59 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 1..2312 1..2312 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:12 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 15..2326 1..2312 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:16 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 13..2324 1..2312 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:05 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 15..2326 1..2312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:37 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3319569..3319905 1..337 100 -> Plus
3L 3320515..3322489 338..2312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:37 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3319569..3319905 1..337 100 -> Plus
3L 3320515..3322489 338..2312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:37 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3319569..3319905 1..337 100 -> Plus
3L 3320515..3322489 338..2312 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:12 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3319569..3319905 1..337 100 -> Plus
arm_3L 3320515..3322489 338..2312 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:09 Download gff for SD05789.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3319569..3319905 1..337 100 -> Plus
3L 3320515..3322489 338..2312 99   Plus

SD05789.pep2 Sequence

Translation from 228 to 473

> SD05789.pep2
MASNAQLGKIILISAIAVFFYYFFWVAVLPFMLIDEGNPIRLFFPPLKYA
FIVPTVFGVIFLGGIAAFSFYHIWSLRVKRD*

SD05789.pep2 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10529-PA 81 GF10529-PA 1..81 1..81 364 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15130-PA 81 GG15130-PA 1..81 1..81 401 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15951-PA 52 GH15951-PA 1..49 32..80 191 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42456-PA 81 CG42456-PA 1..81 1..81 422 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16603-PA 83 GI16603-PA 1..81 1..81 334 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16137-PA 81 GL16137-PA 1..81 1..81 392 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28395-PA 81 GA28395-PA 1..81 1..81 392 93.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14563-PA 81 GM14563-PA 1..81 1..81 404 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13755-PA 81 GD13755-PA 1..81 1..81 404 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12856-PA 83 GJ12856-PA 1..83 1..81 324 79.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21356-PA 81 GE21356-PA 1..81 1..81 393 96.3 Plus

SD05789.hyp Sequence

Translation from 567 to 1538

> SD05789.hyp
MPQWLVIGISGVTCGGKTTLAHSLHDYFKGLRGAPLWNSPYTIGEVRLIS
QDDYFLPVEDKRHQRNEALNAINFELITSLDMAKMLNDIAHIIKGRHVAP
EPQEHLVTYANFEHYAQQFQQQYQYNANYYKQANGGVYQYPPQQHPRHHP
HHQQHHHQHHQIQQQQQHIMSINAQIAAQLRDKKVNFLLVEGFMIFNQPE
LLALCNIKYHFHLPYEKCFERRSKRTYDPPDVTGYFELCVWPHYEKNFSE
YRDCKDITFLNGEIAKEKILAFVLHRIVHYFKERCEVPAPAPVVCPPQQK
RFGMLYMGPSNNNVMPSACPMEQ*

SD05789.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-PB 323 CG12016-PB 1..323 1..323 1788 100 Plus
CG12016-PA 323 CG12016-PA 1..323 1..323 1788 100 Plus

SD05789.pep Sequence

Translation from 567 to 1538

> SD05789.pep
MPQWLVIGISGVTCGGKTTLAHSLHDYFKGLRGAPLWNSPYTIGEVRLIS
QDDYFLPVEDKRHQRNEALNAINFELITSLDMAKMLNDIAHIIKGRHVAP
EPQEHLVTYANFEHYAQQFQQQYQYNANYYKQANGGVYQYPPQQHPRHHP
HHQQHHHQHHQIQQQQQHIMSINAQIAAQLRDKKVNFLLVEGFMIFNQPE
LLALCNIKYHFHLPYEKCFERRSKRTYDPPDVTGYFELCVWPHYEKNFSE
YRDCKDITFLNGEIAKEKILAFVLHRIVHYFKERCEVPAPAPVVCPPQQK
RFGMLYMGPSNNNVMPSACPMEQ*

SD05789.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10530-PA 326 GF10530-PA 1..326 1..323 1332 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15131-PA 320 GG15131-PA 1..320 1..323 1406 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15952-PA 341 GH15952-PA 1..341 1..323 1080 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-PB 323 CG12016-PB 1..323 1..323 1788 100 Plus
CG12016-PA 323 CG12016-PA 1..323 1..323 1788 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16604-PA 353 GI16604-PA 198..353 170..323 716 80.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16138-PA 321 GL16138-PA 1..321 1..323 1204 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11339-PA 335 GA11339-PA 1..335 1..323 1270 78.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14564-PA 323 GM14564-PA 1..323 1..323 1446 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13756-PA 323 GD13756-PA 1..323 1..323 1455 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12857-PA 329 GJ12857-PA 1..329 1..323 1112 67.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20507-PA 355 GK20507-PA 1..355 1..323 1087 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21357-PA 322 GE21357-PA 1..322 1..323 1441 93.5 Plus