Clone SD06560 Report

Search the DGRC for SD06560

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:65
Well:60
Vector:pOT2
Associated Gene/TranscriptCG4199-RB
Protein status:SD06560.pep: gold
Preliminary Size:2507
Sequenced Size:2491

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4199 2001-07-04 Blastp of sequenced clone
CG4199 2003-01-01 Sim4 clustering to Release 3
CG4199 2008-04-29 Release 5.5 accounting
CG4199 2008-08-15 Release 5.9 accounting
CG4199 2008-12-18 5.12 accounting

Clone Sequence Records

SD06560.complete Sequence

2491 bp (2491 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052116

> SD06560.complete
AGTGATGATTGGCGACTAAAAGCAATTCGCAAATAAACAACGACGTGTGT
TGTGTGTGCTGCAAAAAACAGCATCTCGGACACGTTTGGGGGAGTTCAGC
ACATCCATCTGCGGCTGATGACTCAGGCTGTGGAGGAATAATTAAATAGA
AATGATTAACACGCGGGAACTAACTAACTGATAACGAGCTTTGGCACAGT
GATTGATTGTTATTAAGTGAAAAGTAAAGCTCCTAAACTGCCCACTCAAC
TTTCAGGTGGCAGTCCCCTCGCACAGCTCTGAGCTTGGTCAAAACGAAAC
GAGCCTTTGAAGGCCTTCTGAGGATACGCAAGCTCCCGTCCAGCCAATCC
TGGAGGATACTCAACGCCCCGTCTTTTGCGAGCCACATCAACAACCGCCT
GTTAAACACAATGGGTTCCGTCAACTGCAAGGAGTACAAGACCACGGGCA
GCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCCTACCAG
TCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGAAGAGTC
TTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCAGAGTTA
CGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAGGACACC
CGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGGTGCTAA
GTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTTTGGGTC
GTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAACGGAGAC
ATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGTGGAAGT
GGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATCTGGTGA
ATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGATCAGCGA
GTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGTGGAAAC
CATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCCGCGAAG
ACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAACCTTGAG
ATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTACGATAT
CGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTCAGAAAG
AGCTGCACTGCAGCAATGGCTACGTGGTGAAGTACGATAAAATCTACCTG
GCCACAGGCTGCTCCGCCTTCCGGCCGCCTATTCCCGGTGTTAACTTGGA
GAACGTCCGCACTGTCCGAGAGTTGGCGGATACAAAGGCGATATTGGCAT
CGATCACCCCGGAGTCCCGCGTCGTCTGTCTGGGATCGAGCTTTATCGCC
TTGGAGGCAGCTGCTGGGTTGGTCTCCAAAGTGCAAAGCGTCACGGTTGT
GGGTCGTGAAAACGTCCCACTTAAGGCCGCATTCGGCGCGGAGATTGGTC
AGAGGGTGCTCCAGCTGTTCGAGGACAACAAGGTGGTCATGCGCATGGAG
AGCGGCATCGCCGAGATCGTTGGCAACGAAGACGGCAAGGTATCAGAGGT
GGTGCTGGTAGATGACACGCGTCTGCCTTGCGATCTGCTGATCTTGGGCA
CTGGCTCCAAGCTCAACACCCAATTTCTGGCCAAGTCGGGCGTGAAGGTA
AATCGTAACGGATCCGTGGACGTCACTGATTTCCTGGAGTCCAATGTACC
CGATGTGTATGTGGGCGGTGATATAGCAAACGCCCACATTCACGGGCTGG
CCCACGATCGCGTGAACATCGGGCATTACCAGCTGGCTCAATACCATGGA
CGAGTGGCGGCCATCAACATGTGCGGCGGGGTAAAGAAGCTGGAGGCCGT
GCCCTTCTTTTTCACCCTCATCTTCGGCAAGGGAATTCGGTATGCCGGGC
ATGGCTCTTACAAGGATGTGATCATTGACGGCAGCATGGAGGACTTTAAG
TTTGTGGCCTACTTCATCAACGAGGCGGATACGGTGACAGCGGTGGCTTC
GTGCGGCCGGGATCCGATTGTGGCCCAGTTTGCCGAGCTAATCTCGCAGG
GCAAGTGCCTCGGTCGTGGCCAGATCGAAGACCCGGCCACCCGTGAGGAC
TGGACAAAGAAGCTTGGCCAGCCGTTGCCCCAAGTTCGCTAAATAATCAA
CTTAATGTGTATTACCGCTGAGATTTGTTGTTATATTTTCATGCAATCGT
TGAGTATTTATTATGGGTACTCGTATGCAAAACTCTATAAACGTGTAACT
ATATCTGTGTATATTTATAATTGTAGTTGTGGGGACTTCCTTGAGTTCCC
GCCGCGGTTGCCACTTTTGGCCCAAGAGATCAAAGATGTAAGCGTTTCAT
TCCCTTGCCACACAATGGCGTATTGGTTTACTTTTGCTAAATAAAGAATT
TTAACGTTTCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAA

SD06560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4199.d 2754 CG4199.d 285..2754 1..2470 12335 99.9 Plus
CG4199-RD 2470 CG4199-RD 1..2470 1..2470 12335 99.9 Plus
CG4199-RB 2375 CG4199-RB 162..2375 257..2470 11070 100 Plus
CG4199-RB 2375 CG4199-RB 1..164 38..201 820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1960349..1962344 2466..471 9950 99.9 Minus
chrX 22417052 chrX 1965272..1965750 479..1 2380 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:49:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2066431..2068430 2470..471 9985 100 Minus
X 23542271 X 2071358..2071836 479..1 2380 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2074529..2076528 2470..471 9985 99.9 Minus
X 23527363 X 2079456..2079934 479..1 2380 99.7 Minus
2L 23513712 2L 19078709..19078801 841..749 165 78.4 Minus
2L 23513712 2L 19077449..19077517 2101..2033 150 81.1 Minus
Blast to na_te.dros performed on 2019-03-16 13:41:09 has no hits.

SD06560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:42:10 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1960349..1962337 478..2466 99 <- Minus
chrX 1965274..1965750 1..477 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:10 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RB 1..1782 411..2192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:17 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RB 1..1782 411..2192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:46 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RG 1..1782 411..2192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:25 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RF 63..1998 257..2192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:23:38 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RG 1..1782 411..2192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:04:24 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RD 1..2466 1..2466 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:17 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RD 1..2466 1..2466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:46 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RD 1..2466 1..2466 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:25 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RD 1..2466 1..2466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:38 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
CG4199-RD 1..2466 1..2466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:10 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
X 2066435..2068423 478..2466 100 <- Minus
X 2071360..2071836 1..477 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:10 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
X 2066435..2068423 478..2466 100 <- Minus
X 2071360..2071836 1..477 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:10 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
X 2066435..2068423 478..2466 100 <- Minus
X 2071360..2071836 1..477 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:46 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1960468..1962456 478..2466 100 <- Minus
arm_X 1965393..1965869 1..477 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:21:04 Download gff for SD06560.complete
Subject Subject Range Query Range Percent Splice Strand
X 2074533..2076521 478..2466 100 <- Minus
X 2079458..2079934 1..477 99   Minus

SD06560.hyp Sequence

Translation from 410 to 2191

> SD06560.hyp
MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD
SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH
YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE
GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ
EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW
QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR
TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE
NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV
DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY
VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF
FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR
DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVR*

SD06560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4199-PI 593 CG4199-PI 1..593 1..593 3076 100 Plus
CG4199-PH 593 CG4199-PH 1..593 1..593 3076 100 Plus
CG4199-PG 593 CG4199-PG 1..593 1..593 3076 100 Plus
CG4199-PB 593 CG4199-PB 1..593 1..593 3076 100 Plus
CG4199-PD 593 CG4199-PD 1..593 1..593 3076 100 Plus

SD06560.pep Sequence

Translation from 410 to 2191

> SD06560.pep
MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD
SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH
YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE
GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ
EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW
QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR
TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE
NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV
DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY
VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF
FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR
DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVR*

SD06560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22227-PA 595 GF22227-PA 1..594 1..592 2634 81.1 Plus
Dana\GF14603-PA 737 GF14603-PA 223..644 157..542 184 23.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12653-PA 593 GG12653-PA 1..593 1..593 3103 98 Plus
Dere\GG21653-PA 541 GG21653-PA 5..537 52..585 1683 58.2 Plus
Dere\GG24832-PA 738 GG24832-PA 256..627 182..526 188 24 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24706-PA 588 GH24706-PA 1..588 1..593 2339 72.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4199-PI 593 CG4199-PI 1..593 1..593 3076 100 Plus
CG4199-PH 593 CG4199-PH 1..593 1..593 3076 100 Plus
CG4199-PG 593 CG4199-PG 1..593 1..593 3076 100 Plus
CG4199-PB 593 CG4199-PB 1..593 1..593 3076 100 Plus
CG4199-PD 593 CG4199-PD 1..593 1..593 3076 100 Plus
CG4199-PC 593 CG4199-PC 1..593 1..593 3076 100 Plus
CG4199-PA 552 CG4199-PA 1..552 42..593 2859 100 Plus
CG10700-PA 539 CG10700-PA 3..537 50..585 1645 59 Plus
AIF-PA 674 CG7263-PA 192..613 182..577 185 23.4 Plus
AIF-PC 738 CG7263-PC 256..677 182..577 185 23.4 Plus
AIF-PB 739 CG7263-PB 257..678 182..577 185 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21803-PA 587 GI21803-PA 1..587 1..593 2292 69.3 Plus
Dmoj\GI15735-PA 716 GI15735-PA 243..614 182..526 173 22.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13338-PA 596 GL13338-PA 1..596 1..593 2577 80.2 Plus
Dper\GL18705-PA 704 GL18705-PA 222..587 182..515 176 22.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18023-PA 596 GA18023-PA 1..596 1..593 2575 80.2 Plus
Dpse\GA20220-PA 707 GA20220-PA 225..590 182..515 171 22.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17031-PA 539 GM17031-PA 3..537 50..585 1663 57.8 Plus
Dsec\GM18922-PA 512 GM18922-PA 55..338 1..284 1522 98.2 Plus
Dsec\GM23729-PA 739 GM23729-PA 257..628 182..526 186 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21781-PA 539 GD21781-PA 3..537 50..585 1688 58.8 Plus
Dsim\GD24615-PA 68 GD24615-PA 1..68 526..593 363 98.5 Plus
Dsim\GD23134-PA 674 GD23134-PA 192..563 182..526 186 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16976-PA 588 GJ16976-PA 1..588 1..593 2382 72.7 Plus
Dvir\GJ10210-PA 731 GJ10210-PA 231..628 152..526 171 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25759-PA 594 GK25759-PA 1..594 1..593 2429 75.8 Plus
Dwil\GK15141-PA 674 GK15141-PA 202..573 182..526 180 23.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12673-PA 543 GE12673-PA 5..539 52..585 1663 58.6 Plus
Dyak\GE16981-PA 274 GE16981-PA 1..273 1..273 1442 97.4 Plus
Dyak\GE16982-PA 152 GE16982-PA 1..152 442..593 818 98.7 Plus
Dyak\GE17954-PA 739 GE17954-PA 257..628 182..526 185 24.2 Plus