BDGP Sequence Production Resources |
Search the DGRC for SD06560
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 65 |
Well: | 60 |
Vector: | pOT2 |
Associated Gene/Transcript | CG4199-RB |
Protein status: | SD06560.pep: gold |
Preliminary Size: | 2507 |
Sequenced Size: | 2491 |
Gene | Date | Evidence |
---|---|---|
CG4199 | 2001-07-04 | Blastp of sequenced clone |
CG4199 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4199 | 2008-04-29 | Release 5.5 accounting |
CG4199 | 2008-08-15 | Release 5.9 accounting |
CG4199 | 2008-12-18 | 5.12 accounting |
2491 bp (2491 high quality bases) assembled on 2001-07-04
GenBank Submission: AY052116
> SD06560.complete AGTGATGATTGGCGACTAAAAGCAATTCGCAAATAAACAACGACGTGTGT TGTGTGTGCTGCAAAAAACAGCATCTCGGACACGTTTGGGGGAGTTCAGC ACATCCATCTGCGGCTGATGACTCAGGCTGTGGAGGAATAATTAAATAGA AATGATTAACACGCGGGAACTAACTAACTGATAACGAGCTTTGGCACAGT GATTGATTGTTATTAAGTGAAAAGTAAAGCTCCTAAACTGCCCACTCAAC TTTCAGGTGGCAGTCCCCTCGCACAGCTCTGAGCTTGGTCAAAACGAAAC GAGCCTTTGAAGGCCTTCTGAGGATACGCAAGCTCCCGTCCAGCCAATCC TGGAGGATACTCAACGCCCCGTCTTTTGCGAGCCACATCAACAACCGCCT GTTAAACACAATGGGTTCCGTCAACTGCAAGGAGTACAAGACCACGGGCA GCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCCTACCAG TCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGAAGAGTC TTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCAGAGTTA CGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAGGACACC CGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGGTGCTAA GTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTTTGGGTC GTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAACGGAGAC ATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGTGGAAGT GGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATCTGGTGA ATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGATCAGCGA GTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGTGGAAAC CATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCCGCGAAG ACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAACCTTGAG ATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTACGATAT CGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTCAGAAAG AGCTGCACTGCAGCAATGGCTACGTGGTGAAGTACGATAAAATCTACCTG GCCACAGGCTGCTCCGCCTTCCGGCCGCCTATTCCCGGTGTTAACTTGGA GAACGTCCGCACTGTCCGAGAGTTGGCGGATACAAAGGCGATATTGGCAT CGATCACCCCGGAGTCCCGCGTCGTCTGTCTGGGATCGAGCTTTATCGCC TTGGAGGCAGCTGCTGGGTTGGTCTCCAAAGTGCAAAGCGTCACGGTTGT GGGTCGTGAAAACGTCCCACTTAAGGCCGCATTCGGCGCGGAGATTGGTC AGAGGGTGCTCCAGCTGTTCGAGGACAACAAGGTGGTCATGCGCATGGAG AGCGGCATCGCCGAGATCGTTGGCAACGAAGACGGCAAGGTATCAGAGGT GGTGCTGGTAGATGACACGCGTCTGCCTTGCGATCTGCTGATCTTGGGCA CTGGCTCCAAGCTCAACACCCAATTTCTGGCCAAGTCGGGCGTGAAGGTA AATCGTAACGGATCCGTGGACGTCACTGATTTCCTGGAGTCCAATGTACC CGATGTGTATGTGGGCGGTGATATAGCAAACGCCCACATTCACGGGCTGG CCCACGATCGCGTGAACATCGGGCATTACCAGCTGGCTCAATACCATGGA CGAGTGGCGGCCATCAACATGTGCGGCGGGGTAAAGAAGCTGGAGGCCGT GCCCTTCTTTTTCACCCTCATCTTCGGCAAGGGAATTCGGTATGCCGGGC ATGGCTCTTACAAGGATGTGATCATTGACGGCAGCATGGAGGACTTTAAG TTTGTGGCCTACTTCATCAACGAGGCGGATACGGTGACAGCGGTGGCTTC GTGCGGCCGGGATCCGATTGTGGCCCAGTTTGCCGAGCTAATCTCGCAGG GCAAGTGCCTCGGTCGTGGCCAGATCGAAGACCCGGCCACCCGTGAGGAC TGGACAAAGAAGCTTGGCCAGCCGTTGCCCCAAGTTCGCTAAATAATCAA CTTAATGTGTATTACCGCTGAGATTTGTTGTTATATTTTCATGCAATCGT TGAGTATTTATTATGGGTACTCGTATGCAAAACTCTATAAACGTGTAACT ATATCTGTGTATATTTATAATTGTAGTTGTGGGGACTTCCTTGAGTTCCC GCCGCGGTTGCCACTTTTGGCCCAAGAGATCAAAGATGTAAGCGTTTCAT TCCCTTGCCACACAATGGCGTATTGGTTTACTTTTGCTAAATAAAGAATT TTAACGTTTCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4199.d | 2754 | CG4199.d | 285..2754 | 1..2470 | 12335 | 99.9 | Plus |
CG4199-RD | 2470 | CG4199-RD | 1..2470 | 1..2470 | 12335 | 99.9 | Plus |
CG4199-RB | 2375 | CG4199-RB | 162..2375 | 257..2470 | 11070 | 100 | Plus |
CG4199-RB | 2375 | CG4199-RB | 1..164 | 38..201 | 820 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2074529..2076528 | 2470..471 | 9985 | 99.9 | Minus |
X | 23527363 | X | 2079456..2079934 | 479..1 | 2380 | 99.7 | Minus |
2L | 23513712 | 2L | 19078709..19078801 | 841..749 | 165 | 78.4 | Minus |
2L | 23513712 | 2L | 19077449..19077517 | 2101..2033 | 150 | 81.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1960349..1962337 | 478..2466 | 99 | <- | Minus |
chrX | 1965274..1965750 | 1..477 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RB | 1..1782 | 411..2192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RB | 1..1782 | 411..2192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RG | 1..1782 | 411..2192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RF | 63..1998 | 257..2192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RG | 1..1782 | 411..2192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RD | 1..2466 | 1..2466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RD | 1..2466 | 1..2466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RD | 1..2466 | 1..2466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RD | 1..2466 | 1..2466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4199-RD | 1..2466 | 1..2466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2066435..2068423 | 478..2466 | 100 | <- | Minus |
X | 2071360..2071836 | 1..477 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2066435..2068423 | 478..2466 | 100 | <- | Minus |
X | 2071360..2071836 | 1..477 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2066435..2068423 | 478..2466 | 100 | <- | Minus |
X | 2071360..2071836 | 1..477 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1960468..1962456 | 478..2466 | 100 | <- | Minus |
arm_X | 1965393..1965869 | 1..477 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2074533..2076521 | 478..2466 | 100 | <- | Minus |
X | 2079458..2079934 | 1..477 | 99 | Minus |
Translation from 410 to 2191
> SD06560.hyp MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4199-PI | 593 | CG4199-PI | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PH | 593 | CG4199-PH | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PG | 593 | CG4199-PG | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PB | 593 | CG4199-PB | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PD | 593 | CG4199-PD | 1..593 | 1..593 | 3076 | 100 | Plus |
Translation from 410 to 2191
> SD06560.pep MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22227-PA | 595 | GF22227-PA | 1..594 | 1..592 | 2634 | 81.1 | Plus |
Dana\GF14603-PA | 737 | GF14603-PA | 223..644 | 157..542 | 184 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12653-PA | 593 | GG12653-PA | 1..593 | 1..593 | 3103 | 98 | Plus |
Dere\GG21653-PA | 541 | GG21653-PA | 5..537 | 52..585 | 1683 | 58.2 | Plus |
Dere\GG24832-PA | 738 | GG24832-PA | 256..627 | 182..526 | 188 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24706-PA | 588 | GH24706-PA | 1..588 | 1..593 | 2339 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4199-PI | 593 | CG4199-PI | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PH | 593 | CG4199-PH | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PG | 593 | CG4199-PG | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PB | 593 | CG4199-PB | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PD | 593 | CG4199-PD | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PC | 593 | CG4199-PC | 1..593 | 1..593 | 3076 | 100 | Plus |
CG4199-PA | 552 | CG4199-PA | 1..552 | 42..593 | 2859 | 100 | Plus |
CG10700-PA | 539 | CG10700-PA | 3..537 | 50..585 | 1645 | 59 | Plus |
AIF-PA | 674 | CG7263-PA | 192..613 | 182..577 | 185 | 23.4 | Plus |
AIF-PC | 738 | CG7263-PC | 256..677 | 182..577 | 185 | 23.4 | Plus |
AIF-PB | 739 | CG7263-PB | 257..678 | 182..577 | 185 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21803-PA | 587 | GI21803-PA | 1..587 | 1..593 | 2292 | 69.3 | Plus |
Dmoj\GI15735-PA | 716 | GI15735-PA | 243..614 | 182..526 | 173 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13338-PA | 596 | GL13338-PA | 1..596 | 1..593 | 2577 | 80.2 | Plus |
Dper\GL18705-PA | 704 | GL18705-PA | 222..587 | 182..515 | 176 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18023-PA | 596 | GA18023-PA | 1..596 | 1..593 | 2575 | 80.2 | Plus |
Dpse\GA20220-PA | 707 | GA20220-PA | 225..590 | 182..515 | 171 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17031-PA | 539 | GM17031-PA | 3..537 | 50..585 | 1663 | 57.8 | Plus |
Dsec\GM18922-PA | 512 | GM18922-PA | 55..338 | 1..284 | 1522 | 98.2 | Plus |
Dsec\GM23729-PA | 739 | GM23729-PA | 257..628 | 182..526 | 186 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21781-PA | 539 | GD21781-PA | 3..537 | 50..585 | 1688 | 58.8 | Plus |
Dsim\GD24615-PA | 68 | GD24615-PA | 1..68 | 526..593 | 363 | 98.5 | Plus |
Dsim\GD23134-PA | 674 | GD23134-PA | 192..563 | 182..526 | 186 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16976-PA | 588 | GJ16976-PA | 1..588 | 1..593 | 2382 | 72.7 | Plus |
Dvir\GJ10210-PA | 731 | GJ10210-PA | 231..628 | 152..526 | 171 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25759-PA | 594 | GK25759-PA | 1..594 | 1..593 | 2429 | 75.8 | Plus |
Dwil\GK15141-PA | 674 | GK15141-PA | 202..573 | 182..526 | 180 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12673-PA | 543 | GE12673-PA | 5..539 | 52..585 | 1663 | 58.6 | Plus |
Dyak\GE16981-PA | 274 | GE16981-PA | 1..273 | 1..273 | 1442 | 97.4 | Plus |
Dyak\GE16982-PA | 152 | GE16982-PA | 1..152 | 442..593 | 818 | 98.7 | Plus |
Dyak\GE17954-PA | 739 | GE17954-PA | 257..628 | 182..526 | 185 | 24.2 | Plus |