SD06609.complete Sequence
3009 bp (3009 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060473.1
> SD06609.complete
CGAGGTTGTTTATAGCGTCGCGACTCCAGGATTCCCCAAAAACGATTCCT
TTCCGGGTAGCTAAAGCCTGGCTGGCTTGCTTACTAACGGCACGCCACAT
CGAACTGTGTGTGTGTGAGCGTGTGTATCTGTGTGTTGCGGTCCTTTTTC
CCGGCAGGCAGTGCCTTGTAAACAAAAATAACTCTGCTGCCGAGGAGAGG
TTGCCATCGAGGGTGGTTACAACCCCCAAATCTGAAACATCCGACGACAA
AGGCAACTACAAAGCTCCGCGCAGGATAAGTGGCGAGGGCACTCCTGCCT
GCCAACTTTTCGGGGTTGCAGACAGTCGGCAAACAAGCTGCGAATGCGAC
TTTAAACGTCCATAAACATTCAGGCAGAAAACGAAAATAATAAAACGACG
GTCGTTCGGTTTAACTGGGCATCGAAGCGCCTCGCATCTGCAAGTGCAAT
TGTTACTGTATCTGCATCTGTATCTATTCGTGAGCGGTGAAAATGAGCGA
ATCCGGTGGCTATCAGAAAATGCCGCCCGGCTGGGACTGCAAATACGATC
AAGCAACTGGAAATTGCTATTACATAAACTATCTGACGAAGGCCATGCAG
CTGGAGGATCCGCGCGGCCGCAGTTACAGGCAGTTGCAGAACGAACGCTG
TTCCACGGAGTCGATAGCCTTGCAGCAGTTGGTCAGTCAGCCGCAGACGT
CGCACAACAGCTCGCCGTACCACGTCCATCCCAGCAACAACTTGACTGCA
ATTCGGGCCTTCCAGGAGCGCCAGCAACCCACGCTGCACAACATCTCTAC
CAGTCCATTGTTGTCGGCCTCCTCCAGGGGACACTTGGAAATGTCTTCAC
CTCTGCCCTTTCAACGAGCTCGCGTGGGACCGAATCTCTCGCGGCGCTCC
ACCATTCAGGAGACCTCGTTCACCACGCAAGCGGAAACGGATGCCGTGGT
GACCAAAATCCAGAACATGTTCCCCACCGCTGGCGAGAACCATATACGTC
TCCTGCTCAAGCGGTAAGAAATTGGTCCCGACTTCAGCTAAGCGCTCGTG
CCAGCTCAGCTAATCCCCCCTAATCTGCGTACTTACATCTATGTCTTCTC
ACACGCCGCCTAATTCTGCTGCTTACTGCACCTGTCTAACCCCACGACTA
AACGCTAATCCCACGCTTACTAACCCACCACTCCAGCTACTACAATAGCG
AGGCGGTTGTCGTCAGTGCGCTGCAGGTGGAGAAGCACCCGGTTACCATG
CCCGGACCCTTTGTGACGCCCCCTTCGCAGCGGCACCTCTTCCACAGCGG
CTCCGCCTTCTACATGACGCCACCGGCACGTCGGCCGGACACGGTAGCTA
GTCGGCGCACGTCGCGCACGGCCAGTCCCCTGCCCGGCGGACGCTTCGGT
AGTCTCGTGAGCGTGCAGAGCGGTCCTGGTGGTCCAAGTGGCCATCAGGC
TGTTCTGCCTCCCAGCTCGGCTGTTCCGCCGGCTCTGCACGGATCGCCCC
TGTGGCGCAGCTCGCCCAGGCCGCACTCGTCGCCCAAGATGAAGCTGAGG
TTCGATGGGGTTCAAAATCGAGGGACATTTCAAAGCATTGTTGGATGGAT
TGCTTTAAAATCTGTGTTAACCAAAAGATCGGATTTAATCTCTTACTTTA
CAGTTTTTTATTTTTTGCTTGTAACAATCTATTAAGGATTATTAGGCTTG
GGTTACTTATAAAAAGTTCTGTATCTTTTAATATAATTCGTTGGTTTTAA
ATTGGTGTTTTGTTAATGTTTTGTTGAAACATTTATTTTATATAATCCAA
GGTAACATATTAAGTGACAAATTTTCAAATTCTCGATGTTGTAACATAAT
ATTCTTTTAACTTAAATTTTCTTCGATGATAAATAATATCCAAATTCCAC
CATAGATACATGAAGAATATATTCCCCAAGGCGGACGAAGAGCTGCTTCT
GGATATCCTGGCCAATGCGGATAACAACGTGCAGTTCGCATCGGAAAAGT
TGATTTCTTTGGGCTACACAAAAAGAGATATGCAACAGCCACACAGACCC
AACAATCGCCCGCCGGACCTAAATCAAGATCAGGAGGCTGGAGGGGATCA
GAGTGGTGTACATATACCGCTGAGACCCAAGGAATACACAGAGGAAGAGA
AGACAAAAATGCAAACTTTGCTTAAGGAGAAGTACCCACAGATTGCCGAG
CGCATTATCCTAATGGCTTTGGAATCCGTCAACTATGCAGAGGATAGGGC
TACACAAATCCTACAAATAGTCCAGGACGAGGACGAGCAGAGGGAGCAAA
AGCAGGCTCCCATGAATCCCAAGCACCTGGATCTTAAGAAAACCACAGGA
ACCGAGCAGATCGATGGTGCCAACGAAAAAGACAGACATCGTCAGCACTC
CCTTGGAAATTCGCATAATTCGGAATCAGCTGAATTTCAATCTATTATCG
AACGAATGGCCAGTTTGGGACCCAATTCCCAGCTAAGCAAGGGTGCAGAT
GAAAATCTTTTGCTAGCCGATTATGTCACCTGGAATGGACCCAACACGAA
GCTTCTTCAAAAGCAGGTCACTCAAGGACCTAATGCTAGTCTTCTCACAG
ATCGCACCTATAAGCCAAGGGGTGGGAAATCGGAACTCTGCAAAGGACCC
CAGTCCGGATTGGCGAAGGGCAGCATCTACGCCCAAGGCAGCAACAAGAG
CGCCAACATCAAATGCAACTAGGCGGAAGTATCTCATCTGGAACCTCCCC
CAGAGTGCCAAAGAAGTGAAGATGAATCTTAGTAGCCAAGCACCACCCTC
CACATGTTCAGACTTACGATTTATATATGTCGTAGTGTTTTTTGCTCTTA
TCCTTAAACACCTACCAAATACCACACAAGTACGTAGACTCAACAAAAAA
AAAAAAAAAAAAAAAGAAAACGAAGTCACATTCCATCCAAGCTCCAATTG
TTTTTAGTAACTCGTAAATAAACAAACTTTAAAACTAACAAAAAAAAAAA
AAAAAAAAA
SD06609.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10508-RH | 2997 | CG10508-RH | 1078..2997 | 1070..2992 | 9375 | 99.3 | Plus |
CG10508-RG | 2478 | CG10508-RG | 1389..2478 | 1904..2992 | 5320 | 99.3 | Plus |
CG10508-RH | 2997 | CG10508-RH | 11..1071 | 1..1061 | 5290 | 99.9 | Plus |
CG10508-RG | 2478 | CG10508-RG | 15..1027 | 1..1013 | 5050 | 99.9 | Plus |
CG10508-RF | 2847 | CG10508-RF | 15..1027 | 1..1013 | 5050 | 99.9 | Plus |
CG10508-RF | 2847 | CG10508-RF | 1389..1870 | 1904..2385 | 2380 | 99.5 | Plus |
CG10508-RF | 2847 | CG10508-RF | 2372..2847 | 2515..2989 | 2280 | 98.9 | Plus |
CG10508-RG | 2478 | CG10508-RG | 1027..1390 | 1186..1549 | 1820 | 100 | Plus |
CG10508-RF | 2847 | CG10508-RF | 1027..1390 | 1186..1549 | 1820 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 21201786..21203102 | 837..2159 | 6335 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 21199244..21199809 | 1..566 | 2815 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 21204581..21205056 | 2515..2989 | 2270 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 21203156..21203381 | 2160..2385 | 1115 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 21201229..21201394 | 673..838 | 830 | 100 | Plus |
chr3L | 24539361 | chr3L | 21204374..21204506 | 2382..2514 | 665 | 100 | Plus |
chr3L | 24539361 | chr3L | 21201054..21201163 | 566..675 | 550 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21212781..21214097 | 837..2159 | 6335 | 98.9 | Plus |
3L | 28110227 | 3L | 21210239..21210804 | 1..566 | 2815 | 99.8 | Plus |
3L | 28110227 | 3L | 21215576..21216054 | 2515..2992 | 2285 | 99 | Plus |
3L | 28110227 | 3L | 21214151..21214376 | 2160..2385 | 1115 | 99.6 | Plus |
3L | 28110227 | 3L | 21212224..21212389 | 673..838 | 830 | 100 | Plus |
3L | 28110227 | 3L | 21215369..21215501 | 2382..2514 | 665 | 100 | Plus |
3L | 28110227 | 3L | 21212049..21212158 | 566..675 | 550 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 21206112..21207197 | 1070..2159 | 5320 | 99.3 | Plus |
3L | 28103327 | 3L | 21203339..21203904 | 1..566 | 2815 | 99.8 | Plus |
3L | 28103327 | 3L | 21208676..21209154 | 2515..2992 | 2295 | 98.9 | Plus |
3L | 28103327 | 3L | 21205881..21206105 | 837..1061 | 1125 | 100 | Plus |
3L | 28103327 | 3L | 21207251..21207476 | 2160..2385 | 1115 | 99.5 | Plus |
3L | 28103327 | 3L | 21205324..21205489 | 673..838 | 830 | 100 | Plus |
3L | 28103327 | 3L | 21208469..21208601 | 2382..2514 | 665 | 100 | Plus |
3L | 28103327 | 3L | 21205149..21205258 | 566..675 | 550 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 14:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 622..731 | 1751..1634 | 129 | 61.9 | Minus |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 6267..6387 | 1766..1633 | 126 | 63.2 | Minus |
SD06609.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:38:08 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 21199244..21199809 | 1..566 | 99 | -> | Plus |
chr3L | 21201055..21201163 | 567..675 | 100 | -> | Plus |
chr3L | 21201232..21201393 | 676..837 | 100 | -> | Plus |
chr3L | 21201787..21203102 | 838..2159 | 98 | -> | Plus |
chr3L | 21203156..21203381 | 2160..2385 | 99 | -> | Plus |
chr3L | 21204378..21204506 | 2386..2514 | 100 | -> | Plus |
chr3L | 21204581..21205056 | 2515..2989 | 93 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 21:02:16 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 19:57:43 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 00:38:07 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:26:56 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 21:05:29 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:44:13 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10508-RH | 11..2994 | 1..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:42 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10508-RH | 11..2994 | 1..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:38:07 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10508-RL | 25..1037 | 1..1013 | 99 | == | Plus |
CG10508-RL | 1038..2122 | 1906..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:56 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10508-RH | 11..2994 | 1..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:29 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10508-RL | 25..1037 | 1..1013 | 99 | == | Plus |
CG10508-RL | 1038..2122 | 1906..2989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21210239..21210804 | 1..566 | 99 | -> | Plus |
3L | 21212050..21212158 | 567..675 | 100 | -> | Plus |
3L | 21212227..21212388 | 676..837 | 100 | -> | Plus |
3L | 21212782..21214097 | 838..2159 | 98 | -> | Plus |
3L | 21214151..21214376 | 2160..2385 | 99 | -> | Plus |
3L | 21215373..21215501 | 2386..2514 | 100 | -> | Plus |
3L | 21215576..21216051 | 2515..2989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21210239..21210804 | 1..566 | 99 | -> | Plus |
3L | 21212050..21212158 | 567..675 | 100 | -> | Plus |
3L | 21212227..21212388 | 676..837 | 100 | -> | Plus |
3L | 21212782..21214097 | 838..2159 | 98 | -> | Plus |
3L | 21214151..21214376 | 2160..2385 | 99 | -> | Plus |
3L | 21215373..21215501 | 2386..2514 | 100 | -> | Plus |
3L | 21215576..21216051 | 2515..2989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21210239..21210804 | 1..566 | 99 | -> | Plus |
3L | 21212050..21212158 | 567..675 | 100 | -> | Plus |
3L | 21212227..21212388 | 676..837 | 100 | -> | Plus |
3L | 21212782..21214097 | 838..2159 | 98 | -> | Plus |
3L | 21214151..21214376 | 2160..2385 | 99 | -> | Plus |
3L | 21215373..21215501 | 2386..2514 | 100 | -> | Plus |
3L | 21215576..21216051 | 2515..2989 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:38:07 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21203339..21203904 | 1..566 | 99 | -> | Plus |
arm_3L | 21205150..21205258 | 567..675 | 100 | -> | Plus |
arm_3L | 21205327..21205488 | 676..837 | 100 | -> | Plus |
arm_3L | 21205882..21207197 | 838..2159 | 98 | -> | Plus |
arm_3L | 21207251..21207476 | 2160..2385 | 99 | -> | Plus |
arm_3L | 21208473..21208601 | 2386..2514 | 100 | -> | Plus |
arm_3L | 21208676..21209151 | 2515..2989 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:04:12 Download gff for
SD06609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21203339..21203904 | 1..566 | 99 | -> | Plus |
3L | 21205150..21205258 | 567..675 | 100 | -> | Plus |
3L | 21205327..21205488 | 676..837 | 100 | -> | Plus |
3L | 21205882..21207197 | 838..2159 | 98 | -> | Plus |
3L | 21207251..21207476 | 2160..2385 | 99 | -> | Plus |
3L | 21208473..21208601 | 2386..2514 | 100 | -> | Plus |
3L | 21208676..21209151 | 2515..2989 | 98 | | Plus |
SD06609.pep Sequence
Translation from 492 to 1016
> SD06609.pep
MSESGGYQKMPPGWDCKYDQATGNCYYINYLTKAMQLEDPRGRSYRQLQN
ERCSTESIALQQLVSQPQTSHNSSPYHVHPSNNLTAIRAFQERQQPTLHN
ISTSPLLSASSRGHLEMSSPLPFQRARVGPNLSRRSTIQETSFTTQAETD
AVVTKIQNMFPTAGENHIRLLLKR*
SD06609.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24301-PA | 742 | GF24301-PA | 1..181 | 1..174 | 865 | 91.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16166-PA | 733 | GG16166-PA | 1..174 | 1..174 | 921 | 97.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH14970-PA | 727 | GH14970-PA | 7..178 | 4..174 | 745 | 82.3 | Plus |
Dgri\GH12144-PA | 727 | GH12144-PA | 7..178 | 4..174 | 745 | 82.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10508-PL | 445 | CG10508-PL | 1..174 | 1..174 | 913 | 100 | Plus |
CG10508-PK | 733 | CG10508-PK | 1..174 | 1..174 | 913 | 100 | Plus |
CG10508-PJ | 732 | CG10508-PJ | 1..173 | 1..174 | 896 | 99.4 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI13130-PA | 723 | GI13130-PA | 1..171 | 1..174 | 692 | 78.9 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL24668-PA | 410 | GL24668-PA | 1..174 | 1..174 | 849 | 87.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA10361-PA | 755 | GA10361-PA | 1..174 | 1..174 | 844 | 87.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22348-PA | 732 | GM22348-PA | 1..173 | 1..174 | 916 | 98.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14941-PA | 732 | GD14941-PA | 1..174 | 1..174 | 940 | 98.9 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13878-PA | 709 | GJ13878-PA | 1..180 | 1..174 | 723 | 78.7 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK16817-PA | 776 | GK16817-PA | 1..170 | 1..174 | 761 | 83.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23056-PA | 733 | GE23056-PA | 1..174 | 1..174 | 938 | 98.9 | Plus |
Dyak\GE19734-PA | 498 | GE19734-PA | 1..174 | 1..174 | 929 | 98.9 | Plus |
SD06609.hyp Sequence
Translation from 1909 to 2721
> SD06609.hyp
MKNIFPKADEELLLDILANADNNVQFASEKLISLGYTKRDMQQPHRPNNR
PPDLNQDQEAGGDQSGVHIPLRPKEYTEEEKTKMQTLLKEKYPQIAERII
LMALESVNYAEDRATQILQIVQDEDEQREQKQAPMNPKHLDLKKTTGTEQ
IDGANEKDRHRQHSLGNSHNSESAEFQSIIERMASLGPNSQLSKGADENL
LLADYVTWNGPNTKLLQKQITQGPNASLLTDRTYKPRGGKSELCKGPQSG
LAKGSIYAQGSNKSANIKCN*
SD06609.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10508-PL | 445 | CG10508-PL | 176..445 | 1..270 | 1398 | 100 | Plus |
CG10508-PI | 329 | CG10508-PI | 1..158 | 1..158 | 814 | 100 | Plus |
CG10508-PJ | 732 | CG10508-PJ | 296..453 | 1..158 | 814 | 100 | Plus |
CG10508-PK | 733 | CG10508-PK | 297..454 | 1..158 | 814 | 100 | Plus |
CG10508-PJ | 732 | CG10508-PJ | 621..732 | 159..270 | 581 | 99.1 | Plus |
CG10508-PK | 733 | CG10508-PK | 622..733 | 159..270 | 581 | 99.1 | Plus |