Clone SD06609 Report

Search the DGRC for SD06609

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:66
Well:9
Vector:pOT2
Associated Gene/TranscriptCG10508-RH
Protein status:SD06609.pep: wuzgold
Preliminary Size:2907
Sequenced Size:3009

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10508 2001-01-01 Release 2 assignment
CG10508 2001-09-19 Blastp of sequenced clone
CG10508 2008-04-29 Release 5.5 accounting
CG10508 2008-08-15 Release 5.9 accounting
CG10508 2008-12-18 5.12 accounting

Clone Sequence Records

SD06609.complete Sequence

3009 bp (3009 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060473.1

> SD06609.complete
CGAGGTTGTTTATAGCGTCGCGACTCCAGGATTCCCCAAAAACGATTCCT
TTCCGGGTAGCTAAAGCCTGGCTGGCTTGCTTACTAACGGCACGCCACAT
CGAACTGTGTGTGTGTGAGCGTGTGTATCTGTGTGTTGCGGTCCTTTTTC
CCGGCAGGCAGTGCCTTGTAAACAAAAATAACTCTGCTGCCGAGGAGAGG
TTGCCATCGAGGGTGGTTACAACCCCCAAATCTGAAACATCCGACGACAA
AGGCAACTACAAAGCTCCGCGCAGGATAAGTGGCGAGGGCACTCCTGCCT
GCCAACTTTTCGGGGTTGCAGACAGTCGGCAAACAAGCTGCGAATGCGAC
TTTAAACGTCCATAAACATTCAGGCAGAAAACGAAAATAATAAAACGACG
GTCGTTCGGTTTAACTGGGCATCGAAGCGCCTCGCATCTGCAAGTGCAAT
TGTTACTGTATCTGCATCTGTATCTATTCGTGAGCGGTGAAAATGAGCGA
ATCCGGTGGCTATCAGAAAATGCCGCCCGGCTGGGACTGCAAATACGATC
AAGCAACTGGAAATTGCTATTACATAAACTATCTGACGAAGGCCATGCAG
CTGGAGGATCCGCGCGGCCGCAGTTACAGGCAGTTGCAGAACGAACGCTG
TTCCACGGAGTCGATAGCCTTGCAGCAGTTGGTCAGTCAGCCGCAGACGT
CGCACAACAGCTCGCCGTACCACGTCCATCCCAGCAACAACTTGACTGCA
ATTCGGGCCTTCCAGGAGCGCCAGCAACCCACGCTGCACAACATCTCTAC
CAGTCCATTGTTGTCGGCCTCCTCCAGGGGACACTTGGAAATGTCTTCAC
CTCTGCCCTTTCAACGAGCTCGCGTGGGACCGAATCTCTCGCGGCGCTCC
ACCATTCAGGAGACCTCGTTCACCACGCAAGCGGAAACGGATGCCGTGGT
GACCAAAATCCAGAACATGTTCCCCACCGCTGGCGAGAACCATATACGTC
TCCTGCTCAAGCGGTAAGAAATTGGTCCCGACTTCAGCTAAGCGCTCGTG
CCAGCTCAGCTAATCCCCCCTAATCTGCGTACTTACATCTATGTCTTCTC
ACACGCCGCCTAATTCTGCTGCTTACTGCACCTGTCTAACCCCACGACTA
AACGCTAATCCCACGCTTACTAACCCACCACTCCAGCTACTACAATAGCG
AGGCGGTTGTCGTCAGTGCGCTGCAGGTGGAGAAGCACCCGGTTACCATG
CCCGGACCCTTTGTGACGCCCCCTTCGCAGCGGCACCTCTTCCACAGCGG
CTCCGCCTTCTACATGACGCCACCGGCACGTCGGCCGGACACGGTAGCTA
GTCGGCGCACGTCGCGCACGGCCAGTCCCCTGCCCGGCGGACGCTTCGGT
AGTCTCGTGAGCGTGCAGAGCGGTCCTGGTGGTCCAAGTGGCCATCAGGC
TGTTCTGCCTCCCAGCTCGGCTGTTCCGCCGGCTCTGCACGGATCGCCCC
TGTGGCGCAGCTCGCCCAGGCCGCACTCGTCGCCCAAGATGAAGCTGAGG
TTCGATGGGGTTCAAAATCGAGGGACATTTCAAAGCATTGTTGGATGGAT
TGCTTTAAAATCTGTGTTAACCAAAAGATCGGATTTAATCTCTTACTTTA
CAGTTTTTTATTTTTTGCTTGTAACAATCTATTAAGGATTATTAGGCTTG
GGTTACTTATAAAAAGTTCTGTATCTTTTAATATAATTCGTTGGTTTTAA
ATTGGTGTTTTGTTAATGTTTTGTTGAAACATTTATTTTATATAATCCAA
GGTAACATATTAAGTGACAAATTTTCAAATTCTCGATGTTGTAACATAAT
ATTCTTTTAACTTAAATTTTCTTCGATGATAAATAATATCCAAATTCCAC
CATAGATACATGAAGAATATATTCCCCAAGGCGGACGAAGAGCTGCTTCT
GGATATCCTGGCCAATGCGGATAACAACGTGCAGTTCGCATCGGAAAAGT
TGATTTCTTTGGGCTACACAAAAAGAGATATGCAACAGCCACACAGACCC
AACAATCGCCCGCCGGACCTAAATCAAGATCAGGAGGCTGGAGGGGATCA
GAGTGGTGTACATATACCGCTGAGACCCAAGGAATACACAGAGGAAGAGA
AGACAAAAATGCAAACTTTGCTTAAGGAGAAGTACCCACAGATTGCCGAG
CGCATTATCCTAATGGCTTTGGAATCCGTCAACTATGCAGAGGATAGGGC
TACACAAATCCTACAAATAGTCCAGGACGAGGACGAGCAGAGGGAGCAAA
AGCAGGCTCCCATGAATCCCAAGCACCTGGATCTTAAGAAAACCACAGGA
ACCGAGCAGATCGATGGTGCCAACGAAAAAGACAGACATCGTCAGCACTC
CCTTGGAAATTCGCATAATTCGGAATCAGCTGAATTTCAATCTATTATCG
AACGAATGGCCAGTTTGGGACCCAATTCCCAGCTAAGCAAGGGTGCAGAT
GAAAATCTTTTGCTAGCCGATTATGTCACCTGGAATGGACCCAACACGAA
GCTTCTTCAAAAGCAGGTCACTCAAGGACCTAATGCTAGTCTTCTCACAG
ATCGCACCTATAAGCCAAGGGGTGGGAAATCGGAACTCTGCAAAGGACCC
CAGTCCGGATTGGCGAAGGGCAGCATCTACGCCCAAGGCAGCAACAAGAG
CGCCAACATCAAATGCAACTAGGCGGAAGTATCTCATCTGGAACCTCCCC
CAGAGTGCCAAAGAAGTGAAGATGAATCTTAGTAGCCAAGCACCACCCTC
CACATGTTCAGACTTACGATTTATATATGTCGTAGTGTTTTTTGCTCTTA
TCCTTAAACACCTACCAAATACCACACAAGTACGTAGACTCAACAAAAAA
AAAAAAAAAAAAAAAGAAAACGAAGTCACATTCCATCCAAGCTCCAATTG
TTTTTAGTAACTCGTAAATAAACAAACTTTAAAACTAACAAAAAAAAAAA
AAAAAAAAA

SD06609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-RH 2997 CG10508-RH 1078..2997 1070..2992 9375 99.3 Plus
CG10508-RG 2478 CG10508-RG 1389..2478 1904..2992 5320 99.3 Plus
CG10508-RH 2997 CG10508-RH 11..1071 1..1061 5290 99.9 Plus
CG10508-RG 2478 CG10508-RG 15..1027 1..1013 5050 99.9 Plus
CG10508-RF 2847 CG10508-RF 15..1027 1..1013 5050 99.9 Plus
CG10508-RF 2847 CG10508-RF 1389..1870 1904..2385 2380 99.5 Plus
CG10508-RF 2847 CG10508-RF 2372..2847 2515..2989 2280 98.9 Plus
CG10508-RG 2478 CG10508-RG 1027..1390 1186..1549 1820 100 Plus
CG10508-RF 2847 CG10508-RF 1027..1390 1186..1549 1820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21201786..21203102 837..2159 6335 98.9 Plus
chr3L 24539361 chr3L 21199244..21199809 1..566 2815 99.8 Plus
chr3L 24539361 chr3L 21204581..21205056 2515..2989 2270 98.9 Plus
chr3L 24539361 chr3L 21203156..21203381 2160..2385 1115 99.6 Plus
chr3L 24539361 chr3L 21201229..21201394 673..838 830 100 Plus
chr3L 24539361 chr3L 21204374..21204506 2382..2514 665 100 Plus
chr3L 24539361 chr3L 21201054..21201163 566..675 550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21212781..21214097 837..2159 6335 98.9 Plus
3L 28110227 3L 21210239..21210804 1..566 2815 99.8 Plus
3L 28110227 3L 21215576..21216054 2515..2992 2285 99 Plus
3L 28110227 3L 21214151..21214376 2160..2385 1115 99.6 Plus
3L 28110227 3L 21212224..21212389 673..838 830 100 Plus
3L 28110227 3L 21215369..21215501 2382..2514 665 100 Plus
3L 28110227 3L 21212049..21212158 566..675 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21206112..21207197 1070..2159 5320 99.3 Plus
3L 28103327 3L 21203339..21203904 1..566 2815 99.8 Plus
3L 28103327 3L 21208676..21209154 2515..2992 2295 98.9 Plus
3L 28103327 3L 21205881..21206105 837..1061 1125 100 Plus
3L 28103327 3L 21207251..21207476 2160..2385 1115 99.5 Plus
3L 28103327 3L 21205324..21205489 673..838 830 100 Plus
3L 28103327 3L 21208469..21208601 2382..2514 665 100 Plus
3L 28103327 3L 21205149..21205258 566..675 550 100 Plus
Blast to na_te.dros performed 2019-03-15 14:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 622..731 1751..1634 129 61.9 Minus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 6267..6387 1766..1633 126 63.2 Minus

SD06609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:38:08 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21199244..21199809 1..566 99 -> Plus
chr3L 21201055..21201163 567..675 100 -> Plus
chr3L 21201232..21201393 676..837 100 -> Plus
chr3L 21201787..21203102 838..2159 98 -> Plus
chr3L 21203156..21203381 2160..2385 99 -> Plus
chr3L 21204378..21204506 2386..2514 100 -> Plus
chr3L 21204581..21205056 2515..2989 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 21:02:16 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 19:57:43 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 00:38:07 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:26:56 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 21:05:29 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:44:13 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RH 11..2994 1..2989 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:42 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RH 11..2994 1..2989 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:38:07 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RL 25..1037 1..1013 99 == Plus
CG10508-RL 1038..2122 1906..2989 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:56 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RH 11..2994 1..2989 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:29 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RL 25..1037 1..1013 99 == Plus
CG10508-RL 1038..2122 1906..2989 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21210239..21210804 1..566 99 -> Plus
3L 21212050..21212158 567..675 100 -> Plus
3L 21212227..21212388 676..837 100 -> Plus
3L 21212782..21214097 838..2159 98 -> Plus
3L 21214151..21214376 2160..2385 99 -> Plus
3L 21215373..21215501 2386..2514 100 -> Plus
3L 21215576..21216051 2515..2989 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21210239..21210804 1..566 99 -> Plus
3L 21212050..21212158 567..675 100 -> Plus
3L 21212227..21212388 676..837 100 -> Plus
3L 21212782..21214097 838..2159 98 -> Plus
3L 21214151..21214376 2160..2385 99 -> Plus
3L 21215373..21215501 2386..2514 100 -> Plus
3L 21215576..21216051 2515..2989 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:38:08 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21210239..21210804 1..566 99 -> Plus
3L 21212050..21212158 567..675 100 -> Plus
3L 21212227..21212388 676..837 100 -> Plus
3L 21212782..21214097 838..2159 98 -> Plus
3L 21214151..21214376 2160..2385 99 -> Plus
3L 21215373..21215501 2386..2514 100 -> Plus
3L 21215576..21216051 2515..2989 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:38:07 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21203339..21203904 1..566 99 -> Plus
arm_3L 21205150..21205258 567..675 100 -> Plus
arm_3L 21205327..21205488 676..837 100 -> Plus
arm_3L 21205882..21207197 838..2159 98 -> Plus
arm_3L 21207251..21207476 2160..2385 99 -> Plus
arm_3L 21208473..21208601 2386..2514 100 -> Plus
arm_3L 21208676..21209151 2515..2989 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:04:12 Download gff for SD06609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21203339..21203904 1..566 99 -> Plus
3L 21205150..21205258 567..675 100 -> Plus
3L 21205327..21205488 676..837 100 -> Plus
3L 21205882..21207197 838..2159 98 -> Plus
3L 21207251..21207476 2160..2385 99 -> Plus
3L 21208473..21208601 2386..2514 100 -> Plus
3L 21208676..21209151 2515..2989 98   Plus

SD06609.pep Sequence

Translation from 492 to 1016

> SD06609.pep
MSESGGYQKMPPGWDCKYDQATGNCYYINYLTKAMQLEDPRGRSYRQLQN
ERCSTESIALQQLVSQPQTSHNSSPYHVHPSNNLTAIRAFQERQQPTLHN
ISTSPLLSASSRGHLEMSSPLPFQRARVGPNLSRRSTIQETSFTTQAETD
AVVTKIQNMFPTAGENHIRLLLKR*

SD06609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24301-PA 742 GF24301-PA 1..181 1..174 865 91.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16166-PA 733 GG16166-PA 1..174 1..174 921 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14970-PA 727 GH14970-PA 7..178 4..174 745 82.3 Plus
Dgri\GH12144-PA 727 GH12144-PA 7..178 4..174 745 82.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-PL 445 CG10508-PL 1..174 1..174 913 100 Plus
CG10508-PK 733 CG10508-PK 1..174 1..174 913 100 Plus
CG10508-PJ 732 CG10508-PJ 1..173 1..174 896 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13130-PA 723 GI13130-PA 1..171 1..174 692 78.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24668-PA 410 GL24668-PA 1..174 1..174 849 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10361-PA 755 GA10361-PA 1..174 1..174 844 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22348-PA 732 GM22348-PA 1..173 1..174 916 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14941-PA 732 GD14941-PA 1..174 1..174 940 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13878-PA 709 GJ13878-PA 1..180 1..174 723 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16817-PA 776 GK16817-PA 1..170 1..174 761 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23056-PA 733 GE23056-PA 1..174 1..174 938 98.9 Plus
Dyak\GE19734-PA 498 GE19734-PA 1..174 1..174 929 98.9 Plus

SD06609.hyp Sequence

Translation from 1909 to 2721

> SD06609.hyp
MKNIFPKADEELLLDILANADNNVQFASEKLISLGYTKRDMQQPHRPNNR
PPDLNQDQEAGGDQSGVHIPLRPKEYTEEEKTKMQTLLKEKYPQIAERII
LMALESVNYAEDRATQILQIVQDEDEQREQKQAPMNPKHLDLKKTTGTEQ
IDGANEKDRHRQHSLGNSHNSESAEFQSIIERMASLGPNSQLSKGADENL
LLADYVTWNGPNTKLLQKQITQGPNASLLTDRTYKPRGGKSELCKGPQSG
LAKGSIYAQGSNKSANIKCN*

SD06609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-PL 445 CG10508-PL 176..445 1..270 1398 100 Plus
CG10508-PI 329 CG10508-PI 1..158 1..158 814 100 Plus
CG10508-PJ 732 CG10508-PJ 296..453 1..158 814 100 Plus
CG10508-PK 733 CG10508-PK 297..454 1..158 814 100 Plus
CG10508-PJ 732 CG10508-PJ 621..732 159..270 581 99.1 Plus
CG10508-PK 733 CG10508-PK 622..733 159..270 581 99.1 Plus