BDGP Sequence Production Resources |
Search the DGRC for SD06613
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 66 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | vig2-RA |
Protein status: | SD06613.pep: gold |
Preliminary Size: | 1769 |
Sequenced Size: | 1687 |
Gene | Date | Evidence |
---|---|---|
CG11844 | 2001-07-04 | Blastp of sequenced clone |
CG11844 | 2008-04-29 | Release 5.5 accounting |
CG11844 | 2008-08-15 | Release 5.9 accounting |
CG11844 | 2008-12-18 | 5.12 accounting |
1687 bp (1687 high quality bases) assembled on 2001-07-04
GenBank Submission: AY052117
> SD06613.complete TGGTGCGTAAGTTGCTCCGCGTTTTCGCAATTTTAAGCGATTATCACTTT GTTTGAACTCTAGGCCGGCCATGTGCCTATAAGTTAACAGCAAAGCATAT CGTCGCCATTGGGACCAAAGTAACTCTCAAATCTGGTTCAATTTTAATCC GTAGAAATTTTACATCATGGACAATTCTGGAAATAACCGCTACGAGCTGT TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAGAAGAAGGAGA GCAACAGCGAAGACGAGTTGGAGTATGATCCATCGCTGTATCCTCAGCGC GTGGGCCGCCTTCAGCGCATCGTGGACATCCAGTTCAACTTCAATGATGG ACGCAAGGTCGGATTCCGCAAGGGACCTCGCCCCGGAGCCGGTCCTCGCG AGGGTGGCTTCCGCAATGACGGACCTCGCGGAGAAGGTGGCTATCGCAAT GACGGACCTCGCGGAGAAGGTGGTTATCGCAACGACGGACCTCGCGGAGA GGGTCCACGCAATGAGGGACCGCGTGGAGAAGGCTACCGCAATGACGGAC CGCGTGGAGAGGGATTCCGTGGTCCCCGCTTTAACAACGGACCCAGCAAC GGCTATGAAAACAGACAAGACAACAACAGATTCGGAGAGAAACGCCGCTC CGCCCAGAAGCCACTGAAGGTTGACGATGAAGCTCAATTCCCCACTCTGT GCTAGGAGTTGAGAACAACAATAAGATTTAATAATTTCGCGTATTAAATA ATTAGTAAGCTGGTCCTTCGGTTAACAAATAACCATTAGATTTTCGGGCG CGATCTATGAAGCTTGACGACCGATTAATAAACAGAAACAAATCAGCCAC GCTTATCCATATTCCTTAGTTGTAAACAAAAATTTTTGCATTTTTCACTC TCATCATTTACGCATAAAAAAAACTATTACAAATAGTTGGAATGTTGAAA TAAATTTACATCAATTACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig2-RC | 1700 | vig2-RC | 21..1691 | 1..1671 | 8355 | 100 | Plus |
vig2.d | 1674 | vig2.d | 70..1674 | 64..1668 | 8025 | 100 | Plus |
vig2.b | 1523 | vig2.b | 70..1118 | 155..1203 | 5170 | 99.5 | Plus |
vig2.b | 1523 | vig2.b | 1060..1523 | 1208..1668 | 2205 | 98.7 | Plus |
vig2.b | 1523 | vig2.b | 1018..1086 | 1136..1204 | 270 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20947741..20948771 | 638..1668 | 5155 | 100 | Plus |
chr3R | 27901430 | chr3R | 20946630..20947268 | 1..639 | 3195 | 100 | Plus |
chrYHet | 347003 | chrYHet | 305343..305981 | 1..639 | 2940 | 97.3 | Plus |
chrU | 10048995 | chrU | 5541813..5542381 | 1..566 | 2470 | 96.8 | Plus |
chrYHet | 347003 | chrYHet | 306451..306971 | 638..1158 | 2425 | 97.7 | Plus |
chr3R | 27901430 | chr3R | 20948206..20948333 | 1136..1260 | 290 | 83.6 | Plus |
chr3R | 27901430 | chr3R | 20948239..20948363 | 1103..1230 | 290 | 83.6 | Plus |
chr2L | 23010047 | chr2L | 15063583..15063696 | 1050..937 | 240 | 80.7 | Minus |
chrYHet | 347003 | chrYHet | 306916..306971 | 1136..1191 | 205 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25124589..25125622 | 638..1671 | 5170 | 100 | Plus |
3R | 32079331 | 3R | 25123478..25124116 | 1..639 | 3195 | 100 | Plus |
Y | 3667352 | Y | 3022398..3023036 | 1..639 | 2940 | 97.3 | Plus |
Y | 3667352 | Y | 3023506..3024026 | 638..1158 | 2425 | 97.7 | Plus |
3R | 32079331 | 3R | 25125054..25125181 | 1136..1260 | 290 | 83.6 | Plus |
3R | 32079331 | 3R | 25125087..25125211 | 1103..1230 | 290 | 83.6 | Plus |
2L | 23513712 | 2L | 15064789..15064902 | 1050..937 | 240 | 80.7 | Minus |
Y | 3667352 | Y | 3023971..3024026 | 1136..1191 | 205 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24865420..24866453 | 638..1671 | 5170 | 100 | Plus |
3R | 31820162 | 3R | 24864309..24864947 | 1..639 | 3195 | 100 | Plus |
Y | 3410481 | Y | 2868868..2869506 | 1..639 | 2940 | 97.3 | Plus |
Y | 3410481 | Y | 2869976..2870496 | 638..1158 | 2425 | 97.6 | Plus |
2L | 23513712 | 2L | 15064789..15064902 | 1050..937 | 240 | 80.7 | Minus |
Y | 3410481 | Y | 2870441..2870496 | 1136..1191 | 205 | 91 | Plus |
2L | 23513712 | 2L | 15066936..15066976 | 639..599 | 175 | 95.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 1496..1540 | 878..921 | 123 | 77.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20946630..20947267 | 1..638 | 100 | -> | Plus |
chr3R | 20947742..20948771 | 639..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11844-RB | 78..1332 | 150..1405 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RB | 78..1332 | 150..1405 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RB | 78..1332 | 150..1405 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11844-RB | 78..1332 | 150..1405 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RB | 78..1332 | 150..1405 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CR41503-RA | 108..1115 | 150..1158 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11844-RC | 21..1688 | 1..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RC | 21..1688 | 1..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RC | 34..1701 | 1..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11844-RC | 21..1688 | 1..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig2-RC | 34..1701 | 1..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25123478..25124115 | 1..638 | 100 | -> | Plus |
3R | 25124590..25125619 | 639..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25123478..25124115 | 1..638 | 100 | -> | Plus |
3R | 25124590..25125619 | 639..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25123478..25124115 | 1..638 | 100 | -> | Plus |
3R | 25124590..25125619 | 639..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20949200..20949837 | 1..638 | 100 | -> | Plus |
arm_3R | 20950312..20951341 | 639..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24864309..24864946 | 1..638 | 100 | -> | Plus |
3R | 24865421..24866450 | 639..1668 | 100 | Plus |
Translation from 166 to 1404
> SD06613.pep MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL KVDDEAQFPTLC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17890-PA | 337 | GF17890-PA | 1..337 | 1..412 | 790 | 54.4 | Plus |
Dana\GF15560-PA | 536 | GF15560-PA | 246..419 | 122..294 | 419 | 54.8 | Plus |
Dana\GF21047-PA | 384 | GF21047-PA | 196..334 | 146..293 | 178 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11363-PA | 428 | GG11363-PA | 1..428 | 1..412 | 1791 | 86.8 | Plus |
Dere\GG24224-PA | 496 | GG24224-PA | 223..496 | 145..412 | 517 | 51.6 | Plus |
Dere\GG19413-PA | 291 | GG19413-PA | 97..180 | 144..230 | 153 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18047-PA | 345 | GH18047-PA | 1..345 | 1..412 | 789 | 48.3 | Plus |
Dgri\GH10817-PA | 497 | GH10817-PA | 216..381 | 145..294 | 412 | 56.5 | Plus |
Dgri\GH24647-PA | 312 | GH24647-PA | 138..291 | 142..314 | 260 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig2-PD | 412 | CG11844-PD | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PA | 412 | CG11844-PA | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PC | 412 | CG11844-PC | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PB | 443 | CG11844-PB | 32..443 | 1..412 | 2217 | 100 | Plus |
FDY-PE | 317 | CG41503-PE | 1..317 | 14..330 | 1604 | 95.9 | Plus |
FDY-PD | 317 | CG41503-PD | 1..317 | 14..330 | 1604 | 95.9 | Plus |
vig-PB | 490 | CG4170-PB | 1..489 | 1..411 | 716 | 41.7 | Plus |
vig-PA | 490 | CG4170-PA | 1..489 | 1..411 | 716 | 41.7 | Plus |
vig-PC | 490 | CG4170-PC | 1..489 | 1..411 | 716 | 41.7 | Plus |
vig-PD | 490 | CG4170-PD | 1..489 | 1..411 | 716 | 41.7 | Plus |
PPYR1-PA | 309 | CG15031-PA | 96..179 | 144..230 | 170 | 42.5 | Plus |
Nopp140-PE | 773 | CG7421-PE | 385..760 | 15..374 | 163 | 22.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23826-PA | 335 | GI23826-PA | 1..335 | 1..412 | 807 | 47.6 | Plus |
Dmoj\GI17329-PA | 476 | GI17329-PA | 185..372 | 113..299 | 437 | 54.2 | Plus |
Dmoj\GI21552-PA | 397 | GI21552-PA | 188..368 | 142..309 | 392 | 47.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21903-PA | 333 | GL21903-PA | 1..291 | 1..308 | 778 | 54.8 | Plus |
Dper\GL25726-PA | 534 | GL25726-PA | 242..517 | 145..412 | 449 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11231-PA | 333 | GA11231-PA | 1..291 | 1..308 | 797 | 55.8 | Plus |
Dpse\GA18005-PA | 518 | GA18005-PA | 242..518 | 145..412 | 453 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17804-PA | 196 | GM17804-PA | 1..196 | 1..194 | 954 | 96.4 | Plus |
Dsec\GM17805-PA | 198 | GM17805-PA | 1..198 | 218..412 | 833 | 91.5 | Plus |
Dsec\GM14534-PA | 489 | GM14534-PA | 217..489 | 145..412 | 478 | 50.7 | Plus |
Dsec\GM22055-PA | 316 | GM22055-PA | 96..180 | 144..230 | 156 | 42.2 | Plus |
Dsec\GM15190-PA | 262 | GM15190-PA | 96..180 | 144..230 | 152 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21176-PA | 406 | GD21176-PA | 1..406 | 1..412 | 1977 | 95.4 | Plus |
Dsim\GD21970-PA | 520 | GD21970-PA | 262..520 | 159..412 | 403 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23598-PA | 303 | GJ23598-PA | 1..255 | 1..305 | 797 | 59.3 | Plus |
Dvir\GJ15695-PA | 432 | GJ15695-PA | 206..394 | 142..297 | 409 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13399-PA | 376 | GK13399-PA | 1..376 | 1..412 | 938 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23560-PA | 421 | GE23560-PA | 1..421 | 1..412 | 1826 | 89.6 | Plus |
Dyak\GE19416-PA | 486 | GE19416-PA | 214..486 | 145..412 | 487 | 51 | Plus |
Dyak\GE16059-PA | 316 | GE16059-PA | 104..207 | 144..249 | 178 | 41.5 | Plus |
Translation from 166 to 1404
> SD06613.hyp MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL KVDDEAQFPTLC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig2-PD | 412 | CG11844-PD | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PA | 412 | CG11844-PA | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PC | 412 | CG11844-PC | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PB | 443 | CG11844-PB | 32..443 | 1..412 | 2217 | 100 | Plus |
fdy-PB | 350 | CR41503-PB | 21..350 | 1..330 | 1674 | 96.1 | Plus |