Clone SD06613 Report

Search the DGRC for SD06613

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:66
Well:13
Vector:pOT2
Associated Gene/Transcriptvig2-RA
Protein status:SD06613.pep: gold
Preliminary Size:1769
Sequenced Size:1687

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11844 2001-07-04 Blastp of sequenced clone
CG11844 2008-04-29 Release 5.5 accounting
CG11844 2008-08-15 Release 5.9 accounting
CG11844 2008-12-18 5.12 accounting

Clone Sequence Records

SD06613.complete Sequence

1687 bp (1687 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052117

> SD06613.complete
TGGTGCGTAAGTTGCTCCGCGTTTTCGCAATTTTAAGCGATTATCACTTT
GTTTGAACTCTAGGCCGGCCATGTGCCTATAAGTTAACAGCAAAGCATAT
CGTCGCCATTGGGACCAAAGTAACTCTCAAATCTGGTTCAATTTTAATCC
GTAGAAATTTTACATCATGGACAATTCTGGAAATAACCGCTACGAGCTGT
TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC
GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC
ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA
AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG
GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG
TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG
AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT
CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA
GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA
TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG
GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA
GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG
AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC
CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC
CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAGAAGAAGGAGA
GCAACAGCGAAGACGAGTTGGAGTATGATCCATCGCTGTATCCTCAGCGC
GTGGGCCGCCTTCAGCGCATCGTGGACATCCAGTTCAACTTCAATGATGG
ACGCAAGGTCGGATTCCGCAAGGGACCTCGCCCCGGAGCCGGTCCTCGCG
AGGGTGGCTTCCGCAATGACGGACCTCGCGGAGAAGGTGGCTATCGCAAT
GACGGACCTCGCGGAGAAGGTGGTTATCGCAACGACGGACCTCGCGGAGA
GGGTCCACGCAATGAGGGACCGCGTGGAGAAGGCTACCGCAATGACGGAC
CGCGTGGAGAGGGATTCCGTGGTCCCCGCTTTAACAACGGACCCAGCAAC
GGCTATGAAAACAGACAAGACAACAACAGATTCGGAGAGAAACGCCGCTC
CGCCCAGAAGCCACTGAAGGTTGACGATGAAGCTCAATTCCCCACTCTGT
GCTAGGAGTTGAGAACAACAATAAGATTTAATAATTTCGCGTATTAAATA
ATTAGTAAGCTGGTCCTTCGGTTAACAAATAACCATTAGATTTTCGGGCG
CGATCTATGAAGCTTGACGACCGATTAATAAACAGAAACAAATCAGCCAC
GCTTATCCATATTCCTTAGTTGTAAACAAAAATTTTTGCATTTTTCACTC
TCATCATTTACGCATAAAAAAAACTATTACAAATAGTTGGAATGTTGAAA
TAAATTTACATCAATTACAAAAAAAAAAAAAAAAAAA

SD06613.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-RC 1700 vig2-RC 21..1691 1..1671 8355 100 Plus
vig2.d 1674 vig2.d 70..1674 64..1668 8025 100 Plus
vig2.b 1523 vig2.b 70..1118 155..1203 5170 99.5 Plus
vig2.b 1523 vig2.b 1060..1523 1208..1668 2205 98.7 Plus
vig2.b 1523 vig2.b 1018..1086 1136..1204 270 92.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20947741..20948771 638..1668 5155 100 Plus
chr3R 27901430 chr3R 20946630..20947268 1..639 3195 100 Plus
chrYHet 347003 chrYHet 305343..305981 1..639 2940 97.3 Plus
chrU 10048995 chrU 5541813..5542381 1..566 2470 96.8 Plus
chrYHet 347003 chrYHet 306451..306971 638..1158 2425 97.7 Plus
chr3R 27901430 chr3R 20948206..20948333 1136..1260 290 83.6 Plus
chr3R 27901430 chr3R 20948239..20948363 1103..1230 290 83.6 Plus
chr2L 23010047 chr2L 15063583..15063696 1050..937 240 80.7 Minus
chrYHet 347003 chrYHet 306916..306971 1136..1191 205 91.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CR41503-RA 1115 CR41503-RA 111..1115 154..1158 4665 97.6 Plus
CR41503-RA 1115 CR41503-RA 1060..1115 1136..1191 205 91 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25124589..25125622 638..1671 5170 100 Plus
3R 32079331 3R 25123478..25124116 1..639 3195 100 Plus
Y 3667352 Y 3022398..3023036 1..639 2940 97.3 Plus
Y 3667352 Y 3023506..3024026 638..1158 2425 97.7 Plus
3R 32079331 3R 25125054..25125181 1136..1260 290 83.6 Plus
3R 32079331 3R 25125087..25125211 1103..1230 290 83.6 Plus
2L 23513712 2L 15064789..15064902 1050..937 240 80.7 Minus
Y 3667352 Y 3023971..3024026 1136..1191 205 91.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24865420..24866453 638..1671 5170 100 Plus
3R 31820162 3R 24864309..24864947 1..639 3195 100 Plus
Y 3410481 Y 2868868..2869506 1..639 2940 97.3 Plus
Y 3410481 Y 2869976..2870496 638..1158 2425 97.6 Plus
2L 23513712 2L 15064789..15064902 1050..937 240 80.7 Minus
Y 3410481 Y 2870441..2870496 1136..1191 205 91 Plus
2L 23513712 2L 15066936..15066976 639..599 175 95.1 Minus
Blast to na_te.dros performed 2019-03-16 18:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 1496..1540 878..921 123 77.8 Plus

SD06613.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:47:55 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20946630..20947267 1..638 100 -> Plus
chr3R 20947742..20948771 639..1668 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:17 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RB 78..1332 150..1405 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:12:04 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RB 78..1332 150..1405 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:43 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RB 78..1332 150..1405 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:43:12 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RB 78..1332 150..1405 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:49 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RB 78..1332 150..1405 99   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:50:03 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
CR41503-RA 108..1115 150..1158 97   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:04:05 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RC 21..1688 1..1668 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:12:04 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 21..1688 1..1668 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:43 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 34..1701 1..1668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:43:12 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RC 21..1688 1..1668 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:49 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 34..1701 1..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:55 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25123478..25124115 1..638 100 -> Plus
3R 25124590..25125619 639..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:55 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25123478..25124115 1..638 100 -> Plus
3R 25124590..25125619 639..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:55 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25123478..25124115 1..638 100 -> Plus
3R 25124590..25125619 639..1668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:43 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20949200..20949837 1..638 100 -> Plus
arm_3R 20950312..20951341 639..1668 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:49 Download gff for SD06613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24864309..24864946 1..638 100 -> Plus
3R 24865421..24866450 639..1668 100   Plus

SD06613.pep Sequence

Translation from 166 to 1404

> SD06613.pep
MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS
EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG
RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR
QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN
EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW
KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF
RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE
GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL
KVDDEAQFPTLC*

SD06613.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17890-PA 337 GF17890-PA 1..337 1..412 790 54.4 Plus
Dana\GF15560-PA 536 GF15560-PA 246..419 122..294 419 54.8 Plus
Dana\GF21047-PA 384 GF21047-PA 196..334 146..293 178 37.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11363-PA 428 GG11363-PA 1..428 1..412 1791 86.8 Plus
Dere\GG24224-PA 496 GG24224-PA 223..496 145..412 517 51.6 Plus
Dere\GG19413-PA 291 GG19413-PA 97..180 144..230 153 40.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18047-PA 345 GH18047-PA 1..345 1..412 789 48.3 Plus
Dgri\GH10817-PA 497 GH10817-PA 216..381 145..294 412 56.5 Plus
Dgri\GH24647-PA 312 GH24647-PA 138..291 142..314 260 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-PD 412 CG11844-PD 1..412 1..412 2217 100 Plus
vig2-PA 412 CG11844-PA 1..412 1..412 2217 100 Plus
vig2-PC 412 CG11844-PC 1..412 1..412 2217 100 Plus
vig2-PB 443 CG11844-PB 32..443 1..412 2217 100 Plus
FDY-PE 317 CG41503-PE 1..317 14..330 1604 95.9 Plus
FDY-PD 317 CG41503-PD 1..317 14..330 1604 95.9 Plus
vig-PB 490 CG4170-PB 1..489 1..411 716 41.7 Plus
vig-PA 490 CG4170-PA 1..489 1..411 716 41.7 Plus
vig-PC 490 CG4170-PC 1..489 1..411 716 41.7 Plus
vig-PD 490 CG4170-PD 1..489 1..411 716 41.7 Plus
PPYR1-PA 309 CG15031-PA 96..179 144..230 170 42.5 Plus
Nopp140-PE 773 CG7421-PE 385..760 15..374 163 22.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23826-PA 335 GI23826-PA 1..335 1..412 807 47.6 Plus
Dmoj\GI17329-PA 476 GI17329-PA 185..372 113..299 437 54.2 Plus
Dmoj\GI21552-PA 397 GI21552-PA 188..368 142..309 392 47.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21903-PA 333 GL21903-PA 1..291 1..308 778 54.8 Plus
Dper\GL25726-PA 534 GL25726-PA 242..517 145..412 449 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11231-PA 333 GA11231-PA 1..291 1..308 797 55.8 Plus
Dpse\GA18005-PA 518 GA18005-PA 242..518 145..412 453 48.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17804-PA 196 GM17804-PA 1..196 1..194 954 96.4 Plus
Dsec\GM17805-PA 198 GM17805-PA 1..198 218..412 833 91.5 Plus
Dsec\GM14534-PA 489 GM14534-PA 217..489 145..412 478 50.7 Plus
Dsec\GM22055-PA 316 GM22055-PA 96..180 144..230 156 42.2 Plus
Dsec\GM15190-PA 262 GM15190-PA 96..180 144..230 152 42.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21176-PA 406 GD21176-PA 1..406 1..412 1977 95.4 Plus
Dsim\GD21970-PA 520 GD21970-PA 262..520 159..412 403 48.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23598-PA 303 GJ23598-PA 1..255 1..305 797 59.3 Plus
Dvir\GJ15695-PA 432 GJ15695-PA 206..394 142..297 409 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13399-PA 376 GK13399-PA 1..376 1..412 938 55.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23560-PA 421 GE23560-PA 1..421 1..412 1826 89.6 Plus
Dyak\GE19416-PA 486 GE19416-PA 214..486 145..412 487 51 Plus
Dyak\GE16059-PA 316 GE16059-PA 104..207 144..249 178 41.5 Plus

SD06613.hyp Sequence

Translation from 166 to 1404

> SD06613.hyp
MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS
EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG
RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR
QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN
EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW
KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF
RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE
GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL
KVDDEAQFPTLC*

SD06613.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-PD 412 CG11844-PD 1..412 1..412 2217 100 Plus
vig2-PA 412 CG11844-PA 1..412 1..412 2217 100 Plus
vig2-PC 412 CG11844-PC 1..412 1..412 2217 100 Plus
vig2-PB 443 CG11844-PB 32..443 1..412 2217 100 Plus
fdy-PB 350 CR41503-PB 21..350 1..330 1674 96.1 Plus