Clone SD06787 Report

Search the DGRC for SD06787

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:67
Well:87
Vector:pOT2
Associated Gene/TranscriptCG14642-RA
Protein status:SD06787.pep: gold
Preliminary Size:1499
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14642 2001-01-01 Release 2 assignment
CG14642 2001-11-09 Blastp of sequenced clone
CG14642 2003-01-01 Sim4 clustering to Release 3
CG14642 2008-04-29 Release 5.5 accounting
CG14642 2008-08-15 Release 5.9 accounting
CG14642 2008-12-18 5.12 accounting

Clone Sequence Records

SD06787.complete Sequence

1389 bp (1389 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069819

> SD06787.complete
CCGCGTTCGCAGAGCCCTTACGATGCTTCGCAATCTGTCCGTGTGTCTGA
TATCATTTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTG
CCCCCAGAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCC
CGTGGACCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGC
CCGAGGAGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTG
GAGGGCCCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCC
GATGCCCGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGG
AAAACAAGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAG
CGCATCTTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGA
CTTCGATGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCG
GACAGAGGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAG
ATTCGTGCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCA
AGTGGGTTCGCATCGGGGACCTTGACCTGGCCTCCGAGAAGCGGTCGGTG
GAGGCCCAGCTGCTTCGGATTGAGCAAGTGTTCGCGCACCCAAATTACAA
AAAAAAGATGTACTATGACGACATAGCCCTACTTAAGCTGGAGAAGGAAG
TGGAGTGGGTACCCAACAAGACAGAAGTGCGACCGCTGTTTGCTAACACG
ATTCTCTAAGACTGACGGAATACGTTAGACCTGTCCGCCTGTGGGTCTTT
CCAGAGCTGCCCACTACGATAGCCTTCGCAATGGGGTACGGCGCAACGAG
CTTCGCCAAGCCCATGACGAACCGCCTCACAAATCTTAACCTGACCGTAG
TGCCGAACGCTGAGTGCAACGCCGAGCTGCCGCCTCTTGCTGAAACTCCC
AGTGGAGTTCTGGAAAGCCAGATCTGCGCCCAGGACTACATTCTCAACAG
AGACACTTGCCAGGGGGACTCGGGTGGACCCCTACAACTGAATTTGCCGG
GTCGGCGCCGAGGGCATAGAATACACTATCACCTAATTGGCATCACCTCA
TACGGCGTGTTCTGCCGCAGTAGTTACCCATCAGTTTACACCAGAGTGTC
TTCTTTCTTGGACTGGATCGAACTTACTGTTTGGGCCTGACAGATGCCTA
CATCAGCCCAACAACTATTTTCACAGGAGATATTTAAATACATTGCTACA
ACATTACACTAGTGAATTGTAAAAATAAATTGTGCTAAACAGTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD06787.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1413 CG14642-RA 70..1413 1..1344 6720 100 Plus
CG14642-RB 1406 CG14642-RB 70..549 1..480 2400 100 Plus
CG14642-RB 1406 CG14642-RB 841..1286 811..1256 2230 100 Plus
CG14642-RB 1406 CG14642-RB 565..840 479..754 1380 100 Plus
Gel-RA 2677 Gel-RA 2611..2677 1344..1278 335 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 66975..67641 1256..590 3335 100 Minus
chr3R 27901430 chr3R 68060..68439 380..1 1900 100 Minus
chr3R 27901430 chr3R 67699..67810 590..479 560 100 Minus
chr3R 27901430 chr3R 67896..67999 480..377 505 99 Minus
chr3R 27901430 chr3R 66767..66856 1344..1255 450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4241253..4241919 1256..590 3335 100 Minus
3R 32079331 3R 4242338..4242717 380..1 1900 100 Minus
3R 32079331 3R 4241977..4242088 590..479 560 100 Minus
3R 32079331 3R 4242174..4242277 480..377 505 99 Minus
3R 32079331 3R 4241045..4241134 1344..1255 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3982084..3982750 1256..590 3335 100 Minus
3R 31820162 3R 3983169..3983548 380..1 1900 100 Minus
3R 31820162 3R 3982808..3982919 590..479 560 100 Minus
3R 31820162 3R 3983005..3983108 480..377 505 99 Minus
3R 31820162 3R 3981876..3981965 1344..1255 450 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:57:49 has no hits.

SD06787.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:58:42 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 66767..66854 1257..1344 100 <- Minus
chr3R 66975..67641 590..1256 100 <- Minus
chr3R 67700..67809 480..589 100 <- Minus
chr3R 67897..67995 381..479 100 <- Minus
chr3R 68060..68439 1..380 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:28 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..603 23..625 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:24 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..603 23..625 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RB 1..458 23..480 100 == Plus
CG14642-RB 750..1179 811..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:04 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..603 23..625 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:04 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RB 1..458 23..480 100 == Plus
CG14642-RB 750..1179 811..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:08 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 70..1413 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:23 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 70..1413 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..1344 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:04 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 70..1413 1..1344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:04 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..1344 1..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:42 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4241045..4241132 1257..1344 100 <- Minus
3R 4241253..4241919 590..1256 100 <- Minus
3R 4241978..4242087 480..589 100 <- Minus
3R 4242175..4242273 381..479 100 <- Minus
3R 4242338..4242717 1..380 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:42 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4241045..4241132 1257..1344 100 <- Minus
3R 4241253..4241919 590..1256 100 <- Minus
3R 4241978..4242087 480..589 100 <- Minus
3R 4242175..4242273 381..479 100 <- Minus
3R 4242338..4242717 1..380 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:58:42 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4241045..4241132 1257..1344 100 <- Minus
3R 4241253..4241919 590..1256 100 <- Minus
3R 4241978..4242087 480..589 100 <- Minus
3R 4242175..4242273 381..479 100 <- Minus
3R 4242338..4242717 1..380 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:17 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 66767..66854 1257..1344 100 <- Minus
arm_3R 66975..67641 590..1256 100 <- Minus
arm_3R 67700..67809 480..589 100 <- Minus
arm_3R 67897..67995 381..479 100 <- Minus
arm_3R 68060..68439 1..380 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:40 Download gff for SD06787.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3982084..3982750 590..1256 100 <- Minus
3R 3982809..3982918 480..589 100 <- Minus
3R 3983006..3983104 381..479 100 <- Minus
3R 3983169..3983548 1..380 100   Minus
3R 3981876..3981963 1257..1344 100 <- Minus

SD06787.hyp Sequence

Translation from 0 to 624

> SD06787.hyp
RVRRALTMLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSP
VDRDIVFPELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPP
MPGQPFPPPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDAD
FDGRVLARPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQ
VGSHRGP*

SD06787.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 200 CG14642-PA 1..200 8..207 1100 100 Plus
CG14642-PC 392 CG14642-PC 1..153 8..160 847 100 Plus
CG14642-PB 392 CG14642-PB 1..153 8..160 847 100 Plus

SD06787.pep Sequence

Translation from 22 to 624

> SD06787.pep
MLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSPVDRDIVF
PELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPPMPGQPFP
PPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDADFDGRVLA
RPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQVGSHRGP
*

SD06787.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16825-PA 391 GF16825-PA 14..149 9..153 210 55.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11752-PA 384 GG11752-PA 1..145 1..153 407 72.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21866-PA 388 GH21866-PA 3..146 16..153 235 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 200 CG14642-PA 1..200 1..200 1100 100 Plus
CG14642-PC 392 CG14642-PC 1..153 1..153 847 100 Plus
CG14642-PB 392 CG14642-PB 1..153 1..153 847 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21934-PA 382 GI21934-PA 30..140 43..153 195 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12336-PA 400 GL12336-PA 45..157 38..153 325 67.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13141-PC 208 GA13141-PC 45..203 38..199 449 64.2 Plus
Dpse\GA13141-PA 397 GA13141-PA 45..157 38..153 331 67.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10721-PA 391 GM10721-PA 1..152 1..153 591 92.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19695-PA 464 GD19695-PA 73..225 1..153 608 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14293-PA 381 GJ14293-PA 3..139 8..153 220 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22652-PA 386 GK22652-PA 40..154 36..153 276 62 Plus