Clone SD06874 Report

Search the DGRC for SD06874

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:68
Well:74
Vector:pOT2
Associated Gene/TranscriptPyK-RB
Protein status:SD06874.pep: gold
Preliminary Size:3336
Sequenced Size:2041

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7070 2001-01-01 Release 2 assignment
CG7070 2002-06-01 Blastp of sequenced clone
CG7070 2003-01-01 Sim4 clustering to Release 3
PyK 2008-04-29 Release 5.5 accounting

Clone Sequence Records

SD06874.complete Sequence

2041 bp (2041 high quality bases) assembled on 2002-06-01

GenBank Submission: AY118442

> SD06874.complete
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTTTCTGATTGGAGTGTT
CGCTGCCTGTGCATTTAAATTGAATTAAAATAATTCCAAAACAGGAAGAG
CAAATACATCTTTCCGCGAGTTCACCTTTACTGTCAAAAACAGCCCAACG
AAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGAGCACATG
TGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGTCCGGAAT
CGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTGGAGAAGA
TGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCACGGATCG
CACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGGTGAAGAA
CTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCCCTGGACA
CCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGGCACCGCC
GAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCAACAAGGA
ATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTACGAGAACA
TTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGACGGTCTG
ATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTGCGAGGT
GGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTGCCAGGCG
TGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGATCTGCTG
TTCGGTGTGGAGCAGGAAGTGGACATGATCTTTGCTTCGTTCATCCGCAA
CGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGGGCAAGA
ACATCAAGATCATTTCCAAGATCGAGAACCAGCAGGGCATGCACAACCTG
GACGAGATCATCGAGGCCGGTGATGGCATTATGGTGGCCCGTGGAGATCT
GGGTATTGAGATTCCCGCCGAGAAGGTGTTCCTCGCCCAGAAGGCCATGA
TTGCCCGCTGCAACAAGGCTGGCAAGCCTGTGATCTGCGCCACTCAGATG
TTGGAGTCAATGGTGAAGAAGCCACGTCCCACTCGCGCTGAGATCTCTGA
TGTGGCCAACGCTGTGCTCGATGGTGCTGATTGCGTCATGTTGTCTGGTG
AGACCGCCAAGGGCGAGTACCCGCTGGAGTGCGTCCTGACCATGGCCAAG
ACCTGCAAGGAGGCCGAGGCTGCCCTCTGGCACCAGAACCTCTTTAACGA
CTTGGTTCGCGGCGCTGGTACCATCGATGCCTCTCACGCGGCTGCCATCG
CTGCCGTTGAGGCTGCCACCAAGGCCAAGGCCTCCGCCATCGTGGTGATC
ACCACCAGCGGCAAGTCGGCCTTCCAGGTGAGCAAGTACCGCCCACGCTG
CCCCATCATCGCGGTCACCCGTTTCGCGCAGACCGCCCGACAGGCCCATC
TCTACCGTGGACTGGTGCCACTCATCTACAAGGAGCCCGGTCTTGGTGAC
TGGCTGAAGGACGTGGACGTGCGCGTGCAGTTCGGTCTGCAGGTCGGAAA
GAAGAACGGCTTCATCAAGACCGGCGATTCCGTCGTGGTGGTTACCGGCT
GGAAGCAGGGCTCCGGCTTCACCAACACCATCCGCATTGTCACCGTCGAA
TAAATTCTGCCGCTCAGGAAGTACCTGGATGCGTCGCAGCTGCCGCGGGC
GTCGCGTTGATTACTGTTAATAACCAAGTTAATTTATTAATTACACAATA
TTCGGAATATTGGAAACTGCAGGAGGCTGCTGGAACCGCTGTCAGAAGCG
CCGAAGGCCGGCCCGGGCCTCAAACAGACACACAAATATACTATACCATT
GTTGAATAATAGAGATTTCTTCGAAAATTATAATAAAGTCATCACTGTAT
TTATGTACGTATGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD06874.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-RB 2078 PyK-RB 112..2048 81..2017 9685 100 Plus
PyK.e 2237 PyK.e 299..2235 81..2017 9685 100 Plus
PyK.d 1968 PyK.d 140..1966 191..2017 9135 100 Plus
PyK.d 1968 PyK.d 16..128 81..193 565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18194322..18195714 191..1583 6965 100 Plus
chr3R 27901430 chr3R 18196016..18196289 1741..2014 1370 100 Plus
chr3R 27901430 chr3R 18195772..18195929 1583..1740 790 100 Plus
chr3R 27901430 chr3R 18191094..18191206 81..193 565 100 Plus
chr3R 27901430 chr3R 18197169..18197727 747..1305 530 73 Plus
chr3R 27901430 chr3R 10578156..10578345 1298..1109 260 75.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22370775..22372167 191..1583 6965 100 Plus
3R 32079331 3R 22372469..22372745 1741..2017 1385 100 Plus
3R 32079331 3R 22372225..22372382 1583..1740 790 100 Plus
3R 32079331 3R 22367556..22367668 81..193 565 100 Plus
3R 32079331 3R 22373622..22374180 747..1305 530 73 Plus
3R 32079331 3R 14753414..14753603 1298..1109 290 76.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22111606..22112998 191..1583 6965 100 Plus
3R 31820162 3R 22113300..22113576 1741..2017 1385 100 Plus
3R 31820162 3R 22113056..22113213 1583..1740 790 100 Plus
3R 31820162 3R 22108387..22108499 81..193 565 100 Plus
3R 31820162 3R 22114815..22115011 1109..1305 400 80.2 Plus
3R 31820162 3R 14494245..14494434 1298..1109 290 76.8 Minus
3R 31820162 3R 22114728..22114798 1022..1092 145 80.2 Plus
Blast to na_te.dros performed on 2019-03-16 00:29:05 has no hits.

SD06874.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:29:46 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18191094..18191206 81..193 100 -> Plus
chr3R 18194325..18195714 194..1583 100 -> Plus
chr3R 18195773..18195929 1584..1740 100 -> Plus
chr3R 18196016..18196289 1741..2014 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:32 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 41..1602 192..1753 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:12 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 41..1602 192..1753 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:20 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 41..1602 192..1753 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:01 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 41..1602 192..1753 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:03:07 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 41..1602 192..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:11 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 45..1978 81..2014 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:12 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 45..1978 81..2014 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:20 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 21..1954 81..2014 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:01 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 45..1978 81..2014 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:03:07 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 21..1954 81..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:46 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22367556..22367668 81..193 100 -> Plus
3R 22370778..22372167 194..1583 100 -> Plus
3R 22372226..22372382 1584..1740 100 -> Plus
3R 22372469..22372742 1741..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:46 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22367556..22367668 81..193 100 -> Plus
3R 22370778..22372167 194..1583 100 -> Plus
3R 22372226..22372382 1584..1740 100 -> Plus
3R 22372469..22372742 1741..2014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:46 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22367556..22367668 81..193 100 -> Plus
3R 22370778..22372167 194..1583 100 -> Plus
3R 22372226..22372382 1584..1740 100 -> Plus
3R 22372469..22372742 1741..2014 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:20 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18198191..18198464 1741..2014 100   Plus
arm_3R 18193278..18193390 81..193 100 -> Plus
arm_3R 18196500..18197889 194..1583 100 -> Plus
arm_3R 18197948..18198104 1584..1740 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:24 Download gff for SD06874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22111609..22112998 194..1583 100 -> Plus
3R 22113057..22113213 1584..1740 100 -> Plus
3R 22113300..22113573 1741..2014 100   Plus
3R 22108387..22108499 81..193 100 -> Plus

SD06874.pep Sequence

Translation from 214 to 1752

> SD06874.pep
MAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATG
MNIARMNFSHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPE
IRTGLIGGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVV
KPGNRVFVDDGLISLIVREVGKDSLTCEVENGGSLGSRKGVNLPGVPVDL
PAVSEKDKSDLLFGVEQEVDMIFASFIRNAAALTEIRKVLGEKGKNIKII
SKIENQQGMHNLDEIIEAGDGIMVARGDLGIEIPAEKVFLAQKAMIARCN
KAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKG
EYPLECVLTMAKTCKEAEAALWHQNLFNDLVRGAGTIDASHAAAIAAVEA
ATKAKASAIVVITTSGKSAFQVSKYRPRCPIIAVTRFAQTARQAHLYRGL
VPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQGS
GFTNTIRIVTVE*

SD06874.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18439-PA 530 GF18439-PA 22..530 1..509 2514 95.9 Plus
Dana\GF14982-PA 555 GF14982-PA 14..513 7..509 1334 48.4 Plus
Dana\GF19944-PA 699 GF19944-PA 1..444 51..493 1140 52.5 Plus
Dana\GF25162-PA 642 GF25162-PA 94..595 10..502 174 19.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11123-PA 533 GG11123-PA 22..533 1..512 2679 98.4 Plus
Dere\GG24888-PA 554 GG24888-PA 14..513 7..509 1322 48.2 Plus
Dere\GG11124-PA 727 GG11124-PA 1..461 51..511 1298 55.6 Plus
Dere\GG21066-PA 891 GG21066-PA 238..539 189..493 728 50.2 Plus
Dere\GG21066-PA 891 GG21066-PA 148..260 7..119 215 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13278-PA 535 GH13278-PA 22..535 1..512 2436 92 Plus
Dgri\GH20329-PA 535 GH20329-PA 22..535 1..512 2428 91.8 Plus
Dgri\GH20341-PA 550 GH20341-PA 17..466 7..454 1394 57.3 Plus
Dgri\GH13289-PA 550 GH13289-PA 17..466 7..454 1391 57.3 Plus
Dgri\GH19261-PA 539 GH19261-PA 1..508 1..509 1312 49 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-PA 533 CG7070-PA 22..533 1..512 2595 100 Plus
PyK-PB 512 CG7070-PB 1..512 1..512 2595 100 Plus
CG2964-PA 554 CG2964-PA 14..513 7..509 1268 47.8 Plus
CG7069-PA 744 CG7069-PA 1..461 51..511 1257 56.4 Plus
CG7362-PB 793 CG7362-PB 109..413 191..493 704 49.8 Plus
CG7362-PB 793 CG7362-PB 15..109 7..101 216 42.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22374-PA 535 GI22374-PA 22..535 1..512 2470 93.8 Plus
Dmoj\GI22375-PA 541 GI22375-PA 1..426 51..476 1307 57.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24201-PA 530 GL24201-PA 22..530 1..509 2469 91.7 Plus
Dper\GL24202-PA 502 GL24202-PA 1..443 51..493 1330 58.5 Plus
Dper\GL15445-PA 555 GL15445-PA 14..515 7..509 1315 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26534-PA 530 GA26534-PA 22..530 1..509 2483 91.9 Plus
Dpse\GA26534-PB 509 GA26534-PB 1..509 1..509 2482 91.9 Plus
Dpse\GA20296-PA 502 GA20296-PA 1..443 51..493 1330 58.5 Plus
Dpse\GA15544-PA 555 GA15544-PA 14..515 7..509 1316 47.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26420-PA 533 GM26420-PA 22..533 1..512 2709 99.6 Plus
Dsec\GM26421-PA 849 GM26421-PA 67..571 7..511 1406 54.9 Plus
Dsec\GM18368-PA 554 GM18368-PA 14..513 7..509 1324 48 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23184-PA 554 GD23184-PA 14..513 7..509 1324 48 Plus
Dsim\GD20940-PA 754 GD20940-PA 67..441 7..380 1276 62.7 Plus
Dsim\GD20939-PA 239 GD20939-PA 9..239 282..512 1200 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24408-PA 946 GJ24408-PA 22..534 1..511 2473 94 Plus
Dvir\GJ24408-PA 946 GJ24408-PA 533..802 190..457 878 62.3 Plus
Dvir\GJ11126-PA 339 GJ11126-PA 1..300 211..509 784 48.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14262-PA 533 GK14262-PA 22..533 1..512 2522 95.3 Plus
Dwil\GK21752-PA 534 GK21752-PA 14..515 7..509 1343 48.2 Plus
Dwil\GK18960-PA 593 GK18960-PA 1..490 9..497 1333 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\PyK-PA 533 GE10289-PA 22..533 1..512 2708 99.4 Plus
Dyak\GE10290-PA 824 GE10290-PA 53..557 7..511 1422 55.3 Plus
Dyak\GE18182-PA 556 GE18182-PA 14..513 7..509 1319 48 Plus
Dyak\smp-30-PA 757 GE26429-PA 85..377 163..457 733 50.7 Plus
Dyak\smp-30-PA 757 GE26429-PA 15..109 7..101 222 42.1 Plus

SD06874.hyp Sequence

Translation from 214 to 1752

> SD06874.hyp
MAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATG
MNIARMNFSHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPE
IRTGLIGGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVV
KPGNRVFVDDGLISLIVREVGKDSLTCEVENGGSLGSRKGVNLPGVPVDL
PAVSEKDKSDLLFGVEQEVDMIFASFIRNAAALTEIRKVLGEKGKNIKII
SKIENQQGMHNLDEIIEAGDGIMVARGDLGIEIPAEKVFLAQKAMIARCN
KAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKG
EYPLECVLTMAKTCKEAEAALWHQNLFNDLVRGAGTIDASHAAAIAAVEA
ATKAKASAIVVITTSGKSAFQVSKYRPRCPIIAVTRFAQTARQAHLYRGL
VPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQGS
GFTNTIRIVTVE*

SD06874.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-PA 533 CG7070-PA 22..533 1..512 2595 100 Plus
PyK-PB 512 CG7070-PB 1..512 1..512 2595 100 Plus
CG2964-PA 554 CG2964-PA 14..513 7..509 1268 47.8 Plus
CG7069-PA 744 CG7069-PA 1..461 51..511 1257 56.4 Plus
CG7362-PB 793 CG7362-PB 109..413 191..493 704 49.8 Plus