Clone SD06923 Report

Search the DGRC for SD06923

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:69
Well:23
Vector:pOT2
Associated Gene/Transcriptrho-4-RA
Protein status:SD06923.pep: gold
Preliminary Size:2558
Sequenced Size:2389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1697 2001-01-01 Release 2 assignment
CG1697 2001-10-10 Blastp of sequenced clone
CG1697 2003-01-01 Sim4 clustering to Release 3
rho-4 2008-04-29 Release 5.5 accounting
rho-4 2008-08-15 Release 5.9 accounting
rho-4 2008-12-18 5.12 accounting

Clone Sequence Records

SD06923.complete Sequence

2389 bp (2389 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061605

> SD06923.complete
AGACGGTTGGTGTTGTTATTTTTTTTTTAGTTCGCTCCGCTGTTTTTAGG
TGCTACGCGCTTTATGGCCCGCTCTTAATCTTATCGCAAATCAAATCAAA
CCGCGGCCAATGAGCACCGTAATTTCACTTTTTGGCTAACGGTAACGGCA
CTTCCGCTCTCCGAATTCGATATTCAAACAGTCGCATTCCATCGAAAAGC
GAAACAAGAAGTGGCCGTAAAAATGACCGTGAAAACAGTGAATCGCCAGC
AGAGCCAAACGCCCACCCAGCAACGGCAATTGCATCAGCAGCGGGACGTC
GAGAATGGGCTCTATCCCACGATTTCGGACGGAATATGCCACATTATTAT
CGGATAGAATACAGGAAATGTAGGATTTAGGTGCTACGCGCTTTATGGCC
CGCTCTTAATCTTATCGCAAATCAAATCAAACCGCGGCCAATGAGCACCG
TAATTTCACTTTTTGGCTAACGGTAACGGCACTTCCGCTCTCCGAATTCG
ATATTCAAACAGTCGCATTCCATCGAAAAGCGAAACAAGAAGTGGCCGCA
AAAATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCCAAACGCCCGCCCA
ACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAATGGGCTCTATCCCA
CGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCCGCAAACGCTGCGA
CAGGACACCATCGATATGGAGGAAATACCGCTCAATCAGACGAACAGCCA
GGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTTGACAAGCACGACT
CTGACAGAGATGGGCTGATCAACACGCACGAGCTGAAGGAACTGATCTCG
GATGGCTATTGCCGGGACATTCCCGCCTACATCGCCGACCAGATCCTGAA
GCGCAGCGATCAGGATAACGACGGCCACCTGGACTTCGAGGAATTCTATG
CGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACATGCTGACCCGCTAC
TGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGGGCGATGAGCCCGA
CGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCGCCGCTCACCATGG
TGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGTGGACGTCATACAT
TTCCAGGACGATCCCAACTACCAGGATCGCATAGGCGAGAGCACAAGTGG
ACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAGCGCTATGAGGGAT
GGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCATCATGCATCTGATG
ATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCCTGGAGCTGGTGCA
TCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGCGTGTTAGCCGGTT
CCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCTAGCGGGCGCATCG
GGTGGAGTATACGCACTGATCACAGCCCACATTGCCACGATAATTATGAA
CTACTCGGAAATGGAGTACGCCATTGTCCAGCTGCTGGCCTTTCTGGTCT
TCTGCTTCACCGACTTGGGTACCTCGGTGTACCGCCACTTGACCGACCAG
CACGATCAGATTGGCTATGTGGCGCATTTGTCCGGTGCCGTCGCCGGTTT
GCTGGTGGGGATCGGTGTGCTGCGCAATTTGGAGGTGCGGCGATGGGAGC
GCATTCTCTGGTGGGTCGCCGTCATCGTTTACTTTGCCCTCATGACCACT
GGCATCATCATACACGTGTTTGTTCCCGACTACTTCCCAAAACAGGAGTA
CAACTAGCCCCATCACTAGCTCTAGCCCTAGCCCTAACCCTTAACCATGT
CCAAAGTGCACTTCGATATTGAGCCGAGGTTGCAGTACGCACAGTACTAT
ATATAGGATTTCTTCTGACCATGTGCCTATGCCAGCTGCAAAAATAATTT
ATTTTTTTACAACTTGCCATGTCAGCTTCATTCCCAATCCGAAAGTGGTG
CAAGCATGTCGTACGTATTTTTATATATTTATATACATACATACATATAT
AGTAACGTAATTATGCCTTCCTCATAATTCTCTTATACAAAAGACCGACC
GCGGTGGTCCGCCGTATCGATTCCTTGTTACTCGATATTGCGCATCCACT
TAAGCCGTAACCAAAACCCAGACACTAGGCAGGCACATACATAGCCACGT
AGCACATAAGAATTCTTTTTCATATGTATGCACAAAAGCATAAGCAAGAA
GCGCTCTCGCGCAGATCAAGTAAACAACCCACTAACCAAGTACATTTAAG
ATTTTCTCACACCATTTGTTTCAGTCTTAAGCTGATATTCAATCAATAAA
AACGCAAAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD06923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4.c 2478 rho-4.c 1..2363 1..2363 11815 100 Plus
rho-4-RB 2478 rho-4-RB 1..2363 1..2363 11815 100 Plus
rho-4.a 2517 rho-4.a 41..2402 1..2363 11775 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11496336..11497199 1498..2361 4320 100 Plus
chrX 22417052 chrX 11491108..11491525 376..793 2090 100 Plus
chrX 22417052 chrX 11478505..11478886 1..382 1910 100 Plus
chrX 22417052 chrX 11484784..11485165 1..382 1910 100 Plus
chrX 22417052 chrX 11488970..11489351 1..382 1910 100 Plus
chrX 22417052 chrX 11480598..11480979 1..382 1895 99.7 Plus
chrX 22417052 chrX 11482691..11483072 1..382 1895 99.7 Plus
chrX 22417052 chrX 11486877..11487258 1..382 1895 99.7 Plus
chrX 22417052 chrX 11495509..11495873 792..1156 1825 100 Plus
chrX 22417052 chrX 11495935..11496277 1156..1498 1715 100 Plus
chrX 22417052 chrX 11491063..11491391 1..328 1490 97.6 Plus
chrX 22417052 chrX 11480642..11480925 376..659 1330 97.9 Plus
chrX 22417052 chrX 11482735..11483018 376..659 1330 97.9 Plus
chrX 22417052 chrX 11486921..11487204 376..659 1330 97.9 Plus
chrX 22417052 chrX 11478549..11478832 376..659 1315 97.5 Plus
chrX 22417052 chrX 11484828..11485111 376..659 1315 97.5 Plus
chrX 22417052 chrX 11489014..11489297 376..659 1315 97.5 Plus
chr3RHet 2517486 chr3RHet 378295..378610 2057..2361 990 88.8 Plus
chrU 10048995 chrU 501985..502211 2131..2361 865 92.6 Plus
chr2R 21145070 chr2R 335721..335947 2131..2361 850 92.2 Plus
chr3LHet 2555433 chr3LHet 1065642..1065966 2361..2052 820 85.6 Minus
chr3LHet 2555433 chr3LHet 1098845..1099169 2361..2052 820 85.6 Minus
chrU 10048995 chrU 3409345..3409655 2361..2051 780 84 Minus
chrU 10048995 chrU 519003..519266 2057..2309 745 86.9 Plus
chrU 10048995 chrU 622203..622415 2143..2361 740 91.3 Plus
chrU 10048995 chrU 6229481..6229727 2289..2054 660 86.1 Minus
chrU 10048995 chrU 1497880..1498074 2330..2131 615 89.5 Minus
chrU 10048995 chrU 8947321..8947482 2361..2200 615 92 Minus
chrU 10048995 chrU 9717937..9718098 2361..2200 615 92 Minus
chr3RHet 2517486 chr3RHet 819495..819746 2289..2046 585 85.3 Minus
chr3RHet 2517486 chr3RHet 2002359..2002491 2361..2229 560 94.7 Minus
chrU 10048995 chrU 5268090..5268298 2131..2350 550 85.5 Plus
chr2R 21145070 chr2R 709267..709577 2046..2359 515 80.5 Plus
chrU 10048995 chrU 4881217..4881404 2142..2341 510 86 Plus
chr3RHet 2517486 chr3RHet 576349..576599 2299..2051 485 81.5 Minus
chrU 10048995 chrU 6580875..6580988 2360..2247 435 92.1 Minus
chr2RHet 3288813 chr2RHet 2390408..2390525 2361..2236 430 91.3 Minus
chrU 10048995 chrU 4420067..4420175 2154..2266 395 92 Plus
chr3RHet 2517486 chr3RHet 212983..213105 2352..2229 390 89.5 Minus
chrU 10048995 chrU 1918371..1918552 2221..2051 365 82.3 Minus
chrU 10048995 chrU 5606757..5606916 2189..2045 360 83.1 Minus
chrYHet 347003 chrYHet 43562..43652 2361..2271 350 92.3 Minus
chr3L 24539361 chr3L 23949233..23949438 2058..2255 350 80.8 Plus
chrU 10048995 chrU 3086143..3086338 2241..2057 340 82.6 Minus
chr3RHet 2517486 chr3RHet 818312..818393 2361..2280 335 93.9 Minus
chrU 10048995 chrU 9694945..9695097 2134..2299 330 82.6 Plus
chrU 10048995 chrU 7833803..7833896 2130..2037 320 89.4 Minus
chrU 10048995 chrU 5606695..5606757 2361..2299 315 100 Minus
chrU 10048995 chrU 3065537..3065640 2127..2233 305 89.8 Plus
chrX 22417052 chrX 22326844..22326921 2046..2123 270 89.7 Plus
chrX 22417052 chrX 22037466..22037520 2351..2297 260 98.2 Minus
chrX 22417052 chrX 22326924..22326996 2289..2361 260 90.4 Plus
chrU 10048995 chrU 622130..622190 2045..2105 260 95.1 Plus
chrU 10048995 chrU 2122344..2122407 2343..2280 260 93.8 Minus
chrX 22417052 chrX 11491737..11491784 335..382 240 100 Plus
chrU 10048995 chrU 4420011..4420067 2051..2107 240 94.7 Plus
chr3RHet 2517486 chr3RHet 595437..595507 2299..2229 235 88.7 Minus
chr2RHet 3288813 chr2RHet 2390601..2390659 2105..2047 235 93.2 Minus
chrU 10048995 chrU 4420175..4420237 2297..2361 230 93.8 Plus
chr2R 21145070 chr2R 335643..335695 2041..2093 220 94.3 Plus
chrU 10048995 chrU 1498105..1498159 2105..2051 200 90.9 Minus
chr3RHet 2517486 chr3RHet 2017243..2017293 2095..2045 195 92.2 Minus
chrU 10048995 chrU 3065640..3065702 2254..2317 195 90.6 Plus
chr2RHet 3288813 chr2RHet 2390539..2390591 2183..2131 190 90.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11605137..11606002 1498..2363 4330 100 Plus
X 23542271 X 11599909..11600326 376..793 2090 100 Plus
X 23542271 X 11587306..11587687 1..382 1910 100 Plus
X 23542271 X 11593585..11593966 1..382 1910 100 Plus
X 23542271 X 11597771..11598152 1..382 1910 100 Plus
X 23542271 X 11589399..11589780 1..382 1895 99.7 Plus
X 23542271 X 11591492..11591873 1..382 1895 99.7 Plus
X 23542271 X 11595678..11596059 1..382 1895 99.7 Plus
X 23542271 X 11604310..11604674 792..1156 1825 100 Plus
X 23542271 X 11604736..11605078 1156..1498 1715 100 Plus
X 23542271 X 11599864..11600192 1..328 1490 97.6 Plus
X 23542271 X 11589443..11589726 376..659 1330 97.9 Plus
X 23542271 X 11591536..11591819 376..659 1330 97.9 Plus
X 23542271 X 11595722..11596005 376..659 1330 97.9 Plus
X 23542271 X 11587350..11587633 376..659 1315 97.5 Plus
X 23542271 X 11593629..11593912 376..659 1315 97.5 Plus
X 23542271 X 11597815..11598098 376..659 1315 97.5 Plus
3R 32079331 3R 1065468..1065783 2361..2057 990 88.8 Minus
3R 32079331 3R 1965934..1966160 2131..2361 865 92.6 Plus
2R 25286936 2R 4448116..4448342 2131..2361 850 92.2 Plus
3L 28110227 3L 25682976..25683300 2361..2052 820 85.6 Minus
3L 28110227 3L 25716179..25716503 2361..2052 820 85.6 Minus
3R 32079331 3R 2425049..2425359 2361..2051 780 84 Minus
3R 32079331 3R 1982953..1983216 2057..2309 745 86.9 Plus
3R 32079331 3R 1540156..1540368 2143..2361 740 91.3 Plus
U 3151297 U 2533708..2533954 2289..2054 660 86.1 Minus
U 3151297 U 2092492..2092653 2361..2200 615 92 Minus
U 3151297 U 22263..22457 2330..2131 615 89.5 Minus
U 3151297 U 1475810..1475971 2361..2200 615 92 Minus
3R 32079331 3R 2116967..2117218 2289..2046 585 85.3 Minus
3R 32079331 3R 3485671..3485803 2229..2361 560 94.7 Plus
U 3151297 U 881062..881270 2131..2350 550 85.5 Plus
Y 3667352 Y 502518..502726 2131..2350 535 85 Plus
2R 25286936 2R 4821697..4822007 2046..2359 515 80.5 Plus
2CEN 225573 2CEN 121397..121584 2142..2341 510 86 Plus
3R 32079331 3R 928987..929237 2051..2299 485 81.5 Plus
3R 32079331 3R 1082076..1082323 2054..2299 470 81.3 Plus
3R 32079331 3R 1117198..1117445 2054..2299 470 81.3 Plus
U 3151297 U 2777509..2777622 2360..2247 435 92.1 Minus
2R 25286936 2R 3592585..3592702 2361..2236 430 91.3 Minus
U 3151297 U 1919437..1919545 2154..2266 395 92 Plus
Y 3667352 Y 1685790..1685898 2154..2266 395 92 Plus
3R 32079331 3R 1221279..1221401 2229..2352 390 89.5 Plus
Y 3667352 Y 2670551..2670767 2252..2046 375 81.1 Minus
U 3151297 U 151367..151548 2221..2051 365 82.3 Minus
3R 32079331 3R 721646..721805 2189..2045 360 83.1 Minus
3L 28110227 3L 23960327..23960532 2058..2255 350 80.8 Plus
Y 3667352 Y 521939..522029 2361..2271 350 92.3 Minus
2CEN 225573 2CEN 4249..4339 2271..2361 350 92.3 Plus
3R 32079331 3R 629174..629369 2057..2241 340 82.6 Plus
3R 32079331 3R 2115784..2115865 2361..2280 335 93.9 Minus
3R 32079331 3R 1085817..1085969 2134..2299 330 82.6 Plus
U 3151297 U 2257873..2257966 2130..2037 320 89.4 Minus
3R 32079331 3R 721584..721646 2361..2299 315 100 Minus
3R 32079331 3R 649975..650078 2233..2127 305 89.8 Minus
Y 3667352 Y 2670465..2670543 2361..2283 305 92.4 Minus
X 23542271 X 22930815..22930892 2046..2123 270 89.7 Plus
X 23542271 X 22641507..22641561 2351..2297 260 98.2 Minus
X 23542271 X 22930895..22930967 2289..2361 260 90.4 Plus
3R 32079331 3R 1540083..1540143 2045..2105 260 95.1 Plus
Ymm 880023 Ymm 97681..97744 2343..2280 260 93.8 Minus
X 23542271 X 11600538..11600585 335..382 240 100 Plus
U 3151297 U 1919381..1919437 2051..2107 240 94.7 Plus
Y 3667352 Y 1685734..1685790 2051..2107 240 94.7 Plus
3R 32079331 3R 910079..910149 2229..2299 235 88.7 Plus
2R 25286936 2R 3592778..3592836 2105..2047 235 93.2 Minus
U 3151297 U 1919545..1919607 2297..2361 230 93.8 Plus
Y 3667352 Y 1685898..1685960 2297..2361 230 93.8 Plus
2R 25286936 2R 4448038..4448090 2041..2093 220 94.3 Plus
Y 3667352 Y 1477035..1477103 2062..2130 210 87 Plus
Y 3667352 Y 1864462..1864530 2130..2062 210 87 Minus
U 3151297 U 22488..22542 2105..2051 200 90.9 Minus
3R 32079331 3R 649913..649975 2317..2254 195 90.6 Minus
3R 32079331 3R 3470869..3470919 2045..2095 195 92.2 Plus
2R 25286936 2R 3592716..3592768 2183..2131 190 90.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11613235..11614100 1498..2363 4330 100 Plus
X 23527363 X 11608007..11608424 376..793 2090 100 Plus
X 23527363 X 11605869..11606250 1..382 1910 100 Plus
X 23527363 X 11601683..11602064 1..382 1910 100 Plus
X 23527363 X 11595404..11595785 1..382 1910 100 Plus
X 23527363 X 11603776..11604157 1..382 1895 99.7 Plus
X 23527363 X 11599590..11599971 1..382 1895 99.7 Plus
X 23527363 X 11597497..11597878 1..382 1895 99.7 Plus
X 23527363 X 11612408..11612772 792..1156 1825 100 Plus
X 23527363 X 11612834..11613176 1156..1498 1715 100 Plus
X 23527363 X 11607962..11608290 1..328 1500 97.5 Plus
X 23527363 X 11597541..11597824 376..659 1330 97.8 Plus
X 23527363 X 11603820..11604103 376..659 1330 97.8 Plus
X 23527363 X 11599634..11599917 376..659 1330 97.8 Plus
X 23527363 X 11605913..11606196 376..659 1315 97.5 Plus
X 23527363 X 11601727..11602010 376..659 1315 97.5 Plus
X 23527363 X 11595448..11595731 376..659 1315 97.5 Plus
3R 31820162 3R 1763512..1763738 2131..2361 875 92.6 Plus
3R 31820162 3R 863046..863272 2361..2131 860 92.2 Minus
2R 25260384 2R 4449315..4449541 2131..2361 860 92.2 Plus
3R 31820162 3R 1337734..1337946 2143..2361 760 91.3 Plus
3L 28103327 3L 25709279..25709452 2361..2189 710 94.8 Minus
3L 28103327 3L 25676076..25676249 2361..2189 710 94.8 Minus
3R 31820162 3R 2222627..2222799 2361..2189 640 91.3 Minus
Unmapped_scaffold_04 86267 Unmapped_scaffold_04 22263..22457 2330..2131 635 89.5 Minus
3R 31820162 3R 1780620..1780794 2131..2309 630 91 Plus
3R 31820162 3R 3147109..3147241 2229..2361 560 94.7 Plus
3R 31820162 3R 1914545..1914645 2289..2189 445 96 Minus
3R 31820162 3R 1018857..1018989 2229..2361 410 89.5 Plus
Y 3410481 Y 1784899..1785007 2154..2266 405 92 Plus
Y 3410481 Y 499753..499843 2361..2271 350 92.3 Minus
Unmapped_scaffold_10 19956 Unmapped_scaffold_10 4249..4339 2271..2361 350 92.3 Plus
Y 3410481 Y 480332..480431 2131..2234 345 90.3 Plus
2R 25260384 2R 4823120..4823206 2273..2359 345 93.1 Plus
2R 25260384 2R 4823000..4823111 2131..2246 345 87.9 Plus
3R 31820162 3R 726565..726644 2051..2130 340 95 Plus
2R 25260384 2R 3593784..3593860 2361..2285 340 96.1 Minus
Unimproved_211000022278415_1109_2956 1847 Unimproved_211000022278415_1109_2956 38..120 2259..2341 340 93.9 Plus
3R 31820162 3R 1913362..1913443 2361..2280 335 93.9 Minus
3R 31820162 3R 426840..426947 2131..2241 330 89.2 Plus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 29383..29490 2241..2131 330 89.2 Minus
3R 31820162 3R 863288..863361 2130..2057 325 95.9 Minus
3R 31820162 3R 914776..914852 2054..2130 325 94.8 Plus
3R 31820162 3R 879654..879730 2054..2130 325 94.8 Plus
Y 3410481 Y 480444..480540 2254..2350 320 88.6 Plus
2R 25260384 2R 4822896..4822965 2046..2115 320 97.1 Plus
3R 31820162 3R 519162..519224 2361..2299 315 100 Minus
Unmapped_scaffold_08 88768 Unmapped_scaffold_08 65110..65181 2122..2051 315 95.8 Minus
3R 31820162 3R 1780531..1780604 2057..2130 310 94.5 Plus
3R 31820162 3R 726713..726815 2198..2299 310 88.3 Plus
3R 31820162 3R 914921..915023 2198..2299 310 88.3 Plus
3R 31820162 3R 883445..883547 2198..2299 310 88.3 Plus
3R 31820162 3R 879799..879901 2198..2299 310 88.3 Plus
3R 31820162 3R 2222858..2222937 2130..2051 310 92.5 Minus
3R 31820162 3R 519298..519383 2130..2045 310 90.6 Minus
Y 3410481 Y 2598892..2598968 2122..2046 310 93.5 Minus
Y 3410481 Y 2598666..2598744 2361..2283 305 92.4 Minus
3R 31820162 3R 1914717..1914796 2125..2046 295 91.2 Minus
3L 28103327 3L 23953427..23953499 2058..2130 275 91.7 Plus
X 23527363 X 22915907..22915984 2046..2123 270 89.7 Plus
3R 31820162 3R 447594..447656 2189..2127 270 95.2 Minus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 8674..8736 2127..2189 270 95.2 Plus
Unmapped_scaffold_08 88768 Unmapped_scaffold_08 65000..65086 2221..2131 265 87.9 Minus
X 23527363 X 22915987..22916059 2289..2361 260 90.4 Plus
X 23527363 X 22626599..22626653 2351..2297 260 98.1 Minus
3R 31820162 3R 1337661..1337721 2045..2105 260 95 Plus
3L 28103327 3L 25709525..25709603 2130..2052 260 88.6 Minus
3L 28103327 3L 25676322..25676400 2130..2052 260 88.6 Minus
X 23527363 X 11608636..11608683 335..382 240 100 Plus
Y 3410481 Y 1784843..1784899 2051..2107 240 94.7 Plus
Y 3410481 Y 1785007..1785069 2297..2361 240 93.8 Plus
3R 31820162 3R 707657..707727 2229..2299 235 88.7 Plus
3R 31820162 3R 519224..519282 2189..2131 235 93.2 Minus
2R 25260384 2R 3593977..3594035 2105..2047 235 93.2 Minus
Y 3410481 Y 2598794..2598868 2209..2131 220 87.3 Minus
2R 25260384 2R 4449237..4449289 2041..2093 220 94.3 Plus
2R 25260384 2R 3593856..3593901 2281..2236 215 97.8 Minus
3R 31820162 3R 726663..726713 2134..2184 210 94.1 Plus
3R 31820162 3R 914871..914921 2134..2184 210 94.1 Plus
3R 31820162 3R 883395..883445 2134..2184 210 94.1 Plus
3R 31820162 3R 879749..879799 2134..2184 210 94.1 Plus
3R 31820162 3R 2222798..2222842 2175..2131 210 97.7 Minus
Y 3410481 Y 1383102..1383170 2062..2130 210 86.9 Plus
Y 3410481 Y 1963571..1963639 2130..2062 210 86.9 Minus
3R 31820162 3R 447491..447553 2317..2254 205 90.6 Minus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 8777..8839 2254..2317 205 90.6 Plus
Unmapped_scaffold_04 86267 Unmapped_scaffold_04 22491..22542 2102..2051 200 92.3 Minus
3R 31820162 3R 3132307..3132357 2045..2095 195 92.1 Plus
3L 28103327 3L 23953568..23953632 2192..2255 195 89.2 Plus
2R 25260384 2R 3593915..3593967 2183..2131 190 90.5 Minus
3L 28103327 3L 23953515..23953567 2131..2183 190 90.5 Plus
Unimproved_211000022278415_1109_2956 1847 Unimproved_211000022278415_1109_2956 1..41 2214..2254 190 97.5 Plus
3R 31820162 3R 1763461..1763492 2094..2125 145 96.8 Plus
3L 28103327 3L 25709463..25709509 2177..2131 145 87.2 Minus
3L 28103327 3L 25676260..25676306 2177..2131 145 87.2 Minus
Unmapped_scaffold_08 88768 Unmapped_scaffold_08 64943..64989 2317..2271 145 87.2 Minus
Y 3410481 Y 480258..480306 2041..2089 140 85.7 Plus
3L 28103327 3L 23953662..23953692 2331..2361 140 96.7 Plus
Blast to na_te.dros performed 2019-03-15 23:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tom1 410 Tom1 DMTOM1_LTR 410bp 1..322 2051..2361 1316 91.1 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 327..385 2301..2357 145 78.3 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 7254..7312 2301..2357 145 78.3 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 235..323 2266..2357 129 64.9 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6821..6909 2266..2357 129 64.9 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 270..319 2313..2360 128 76 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6851..6900 2313..2360 128 76 Plus

SD06923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:23:06 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11488970..11489349 1..380 100 -> Plus
chrX 11491113..11491525 381..793 100 -> Plus
chrX 11495511..11495872 794..1155 100 -> Plus
chrX 11495935..11496277 1156..1498 100 -> Plus
chrX 11496337..11496888 1499..2050 93 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:37 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 554..1807 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:13 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 554..1807 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:21 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 554..1807 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:08 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 554..1807 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:28 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 554..1807 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:14 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RB 1..2361 1..2361 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:13 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RB 1..2361 1..2361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:21 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 72..2057 376..2361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:08 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RB 1..2361 1..2361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:28 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 72..2057 376..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:06 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11604736..11605078 1156..1498 100 -> Plus
X 11597771..11598150 1..380 100 -> Plus
X 11599914..11600326 381..793 100 -> Plus
X 11604312..11604673 794..1155 100 -> Plus
X 11605138..11606000 1499..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:06 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11604736..11605078 1156..1498 100 -> Plus
X 11597771..11598150 1..380 100 -> Plus
X 11599914..11600326 381..793 100 -> Plus
X 11604312..11604673 794..1155 100 -> Plus
X 11605138..11606000 1499..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:06 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11604736..11605078 1156..1498 100 -> Plus
X 11597771..11598150 1..380 100 -> Plus
X 11599914..11600326 381..793 100 -> Plus
X 11604312..11604673 794..1155 100 -> Plus
X 11605138..11606000 1499..2361 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:21 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11491804..11492183 1..380 100 -> Plus
arm_X 11493947..11494359 381..793 100 -> Plus
arm_X 11498345..11498706 794..1155 100 -> Plus
arm_X 11498769..11499111 1156..1498 100 -> Plus
arm_X 11499171..11500033 1499..2361 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:12 Download gff for SD06923.complete
Subject Subject Range Query Range Percent Splice Strand
X 11605869..11606248 1..380 100 -> Plus
X 11608012..11608424 381..793 100 -> Plus
X 11612410..11612771 794..1155 100 -> Plus
X 11612834..11613176 1156..1498 100 -> Plus
X 11613236..11614098 1499..2361 100   Plus

SD06923.hyp Sequence

Translation from 553 to 1806

> SD06923.hyp
MPVKTVNRQQSQTPAQQLQLQQQRDVENGLYPTIPAERRSPPSRPQTLRQ
DTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISD
GYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYC
RYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHF
QDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMM
NLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASG
GVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLTDQH
DQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTG
IIIHVFVPDYFPKQEYN*

SD06923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-PB 417 CG1697-PB 1..417 1..417 2210 100 Plus
rho-4-PA 417 CG1697-PA 1..417 1..417 2210 100 Plus
stet-PB 485 CG33166-PB 66..459 54..405 501 31.1 Plus
stet-PA 330 CG33166-PA 57..304 169..405 492 37.6 Plus
rho-PB 355 CG1004-PB 102..328 179..405 472 40.5 Plus

SD06923.pep Sequence

Translation from 553 to 1806

> SD06923.pep
MPVKTVNRQQSQTPAQQLQLQQQRDVENGLYPTIPAERRSPPSRPQTLRQ
DTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISD
GYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYC
RYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHF
QDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMM
NLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASG
GVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLTDQH
DQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTG
IIIHVFVPDYFPKQEYN*

SD06923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21300-PA 418 GF21300-PA 1..418 1..417 2108 95.5 Plus
Dana\GF25034-PA 485 GF25034-PA 56..459 44..405 481 29.6 Plus
Dana\rho-PA 365 GF24766-PA 112..338 179..405 468 40.5 Plus
Dana\GF24760-PA 352 GF24760-PA 106..324 178..405 416 38.7 Plus
Dana\GF15679-PA 260 GF15679-PA 97..254 222..377 299 36.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18433-PA 417 GG18433-PA 1..417 1..417 2219 98.8 Plus
Dere\GG14598-PA 485 GG14598-PA 56..459 44..405 503 31.3 Plus
Dere\GG14792-PA 353 GG14792-PA 100..326 179..405 465 40.5 Plus
Dere\GG14787-PA 349 GG14787-PA 105..321 178..405 380 38.6 Plus
Dere\GG10271-PA 263 GG10271-PA 96..254 221..377 266 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24104-PA 420 GH24104-PA 1..420 1..417 1978 88.6 Plus
Dgri\GH15206-PA 476 GH15206-PA 65..450 54..405 509 32.7 Plus
Dgri\GH16240-PA 436 GH16240-PA 171..409 179..405 449 38.1 Plus
Dgri\GH16237-PA 321 GH16237-PA 48..280 156..393 423 37.8 Plus
Dgri\GH11182-PA 229 GH11182-PA 73..229 222..376 295 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-PB 417 CG1697-PB 1..417 1..417 2210 100 Plus
rho-4-PA 417 CG1697-PA 1..417 1..417 2210 100 Plus
stet-PB 485 CG33166-PB 66..459 54..405 501 31.1 Plus
stet-PA 330 CG33166-PA 57..304 169..405 492 37.6 Plus
rho-PB 355 CG1004-PB 102..328 179..405 472 40.5 Plus
rho-PA 355 CG1004-PA 102..328 179..405 472 40.5 Plus
ru-PA 341 CG1214-PA 97..313 178..405 427 36.9 Plus
rho-6-PB 263 CG17212-PB 96..254 221..377 295 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14374-PA 420 GI14374-PA 1..420 1..417 1950 87.1 Plus
Dmoj\GI16724-PA 476 GI16724-PA 65..450 54..405 511 32.2 Plus
Dmoj\GI16668-PA 398 GI16668-PA 142..367 179..401 466 41.1 Plus
Dmoj\GI16665-PA 311 GI16665-PA 39..270 155..393 363 37.5 Plus
Dmoj\GI15831-PA 242 GI15831-PA 27..236 156..377 281 28.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26733-PA 417 GL26733-PA 1..417 1..417 2075 94 Plus
Dper\GL22587-PA 487 GL22587-PA 57..466 44..407 499 31.7 Plus
Dper\GL22503-PA 344 GL22503-PA 101..329 177..415 420 38 Plus
Dper\GL22508-PA 342 GL22508-PA 136..315 217..405 293 35.8 Plus
Dper\GL19515-PA 204 GL19515-PA 68..199 248..377 184 33.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14244-PA 417 GA14244-PA 1..417 1..417 2077 94.2 Plus
Dpse\GA17336-PA 487 GA17336-PA 57..465 44..406 495 31.8 Plus
Dpse\rho-PA 365 GA10027-PA 136..338 217..405 449 42.9 Plus
Dpse\GA11431-PA 336 GA11431-PA 93..321 177..415 421 38 Plus
Dpse\GA14394-PA 252 GA14394-PA 90..247 222..377 254 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13096-PA 417 GM13096-PA 1..417 1..417 2240 99.8 Plus
Dsec\GM14213-PA 485 GM14213-PA 56..459 44..405 505 31.1 Plus
Dsec\ve-PA 364 GM14413-PA 111..337 179..405 462 40.5 Plus
Dsec\GM14406-PA 344 GM14406-PA 100..316 178..405 376 36.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17034-PA 382 GD17034-PA 1..382 1..417 1846 85.9 Plus
Dsim\GD13475-PA 485 GD13475-PA 56..459 44..405 505 31.1 Plus
Dsim\GD13619-PA 355 GD13619-PA 102..328 179..405 462 40.5 Plus
Dsim\GD13615-PA 344 GD13615-PA 100..316 178..405 373 36.5 Plus
Dsim\GD18262-PA 91 GD18262-PA 5..62 80..137 320 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19413-PA 350 GJ19413-PA 1..291 1..289 1286 85.3 Plus
Dvir\GJ12468-PA 476 GJ12468-PA 65..450 54..405 517 32.2 Plus
Dvir\rho-PA 401 GJ12920-PA 145..370 179..401 468 41.1 Plus
Dvir\GJ12917-PA 314 GJ12917-PA 46..273 162..393 375 38.1 Plus
Dvir\GJ10319-PA 246 GJ10319-PA 69..236 214..384 293 33.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15930-PA 418 GK15930-PA 1..418 1..417 1994 90.2 Plus
Dwil\GK17206-PA 475 GK17206-PA 54..449 44..405 495 31.2 Plus
Dwil\GK16984-PA 391 GK16984-PA 137..364 179..405 473 41.2 Plus
Dwil\GK16979-PA 315 GK16979-PA 72..300 177..415 380 36.1 Plus
Dwil\GK14633-PA 257 GK14633-PA 74..215 188..343 248 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15951-PA 417 GE15951-PA 1..417 1..417 2223 99.3 Plus
Dyak\GE20958-PA 485 GE20958-PA 56..459 44..405 507 31.3 Plus
Dyak\GE21154-PA 355 GE21154-PA 102..328 179..405 464 40.5 Plus
Dyak\GE21150-PA 343 GE21150-PA 99..315 178..405 383 37.3 Plus
Dyak\GE12391-PA 263 GE12391-PA 97..254 222..377 249 33.3 Plus