Clone SD07191 Report

Search the DGRC for SD07191

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:71
Well:91
Vector:pOT2
Associated Gene/Transcriptl(3)04053-RA
Protein status:SD07191.pep: gold
Preliminary Size:2402
Sequenced Size:2451

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11238 2001-01-01 Release 2 assignment
CG11238 2001-09-19 Blastp of sequenced clone
CG11238 2003-01-01 Sim4 clustering to Release 3
l(3)04053 2008-04-29 Release 5.5 accounting
l(3)04053 2008-08-15 Release 5.9 accounting
l(3)04053 2008-12-18 5.12 accounting

Clone Sequence Records

SD07191.complete Sequence

2451 bp (2451 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058781

> SD07191.complete
GAAAAATGGGATGCAAAAATAACTGAGAGTCAGGAGAGAACGCGACCACA
AGAGGCAGTGAAACAGCACGGGCTACAGACAGTAGGACAAACAAACCGCC
CAGCTTGGCCGACACGTATAAAGGCAACCGGCAACAAGAAGGGCCAACCG
CTCTCTGTCCGCGTTTACAATTAAATGGCAAATGGAAGTGCGACCGAAGC
GGCGGCCACGGCCAATCCGCAGCAGAGGATTCCACAAGCCGCACAGCAAG
CGCTTCTTACCGAGACGACAATGGGCTCAAAAGATTGCGCGCCGGCCGCT
TTGGGGGTAAACGATCTCGTGGCGGACGTGTGTATGAACGGCCGCGGAGC
GGACTTCCCCAGCATACGGACCACAACGTCCACGGGAGGAGCGGGACCAG
CAGCAGCTTCCTCGTCATCGTTCTCCTTTAAACATTTTCTAAGCAGTACC
GGAACGGTGACTGCCCCGACTAGCACGGTGACCTCGGCTGCCGTGCAAAC
GTCAACGGGTGCCCGACCTAAGGTACCTCAGTCAGCCTCTGTCTCCCATA
TGCAGCCGCCTGATGTGAACGGCAGCAGTGCATCCTCTAGAATGAAGCGA
TCCCCGCGCTTCAGTAGTTTTGACTCGCAGGCGAGTCTGGCGGAGTACGC
ATCATGTGGGGGAGGCACATCCAGTAGCAGCGGCGGGTCGCAATCTCAGC
ACCGCTTGAGGCCGGATCATCGGCTGGGTCACGATGCTGTTCAGGACGCT
CTGGATAACGATGATGACGACCATGTGGCTCTGGCTCAGGTGCGCAACAC
AAACAGGCATTACGATGAAAGAATAGACGACGATATTTTTCCATCCGCTT
CCAACCAGCAACCTGCCGTTGGCTCGCGCTACGTGCCACGCTCGTACTCC
AACTACGATATGCCTCCCCATTTGCCAGGCCCTTCGTCATCGCCCCGTCG
TCGGCCGACTGGAAACCGCGACCAACGCCCCACCAGACTTGTGCTGTCTG
CCGGCCCCAAGATGAAGCTTGACCTGCCCCTGGATACATGCAATGTAGCT
GGCGGCGGAGCCGGTGGTAGTGCTGCTGCAGCATCAGCCCTGCCAGACTT
CGTGCAGGATCACTTGCCGGATGCTTGGTGCGCCGGTCAGGATGCTCTGA
GCTCTCCGCCAAACTCCCCTCTGGTTGGAGCTGAAGCGTCGAGCGGAGCA
GTAGGGCTTCTGCCGTCCTCTCTCGCACCCAGATGTTCCAGTGCTGCCGC
CCTCCCCGGTCCAACTGGCGAACCAACCGCCGGCTCTACCGTCAAAATGC
TGCCCGACTTTCTGTCCGACGGTTCCATAATTCACTCGTCTCAGCGACTA
GCTGACGTAGCTATCGGGCTGCCCTCCAACCCTATTGACTCGCCTCCCCA
GGAGGCGGAAGGTACGTTGCAACTGTCGACACTGAGACAGGAGAACGAAC
GTCTACAGCGGGAGCTGCAGGAAGCTCGTGCGGAACTTAATCTCCAGACC
AGACGGGCCAGCGAGTTTGAGCAGCAGCTTCTGCAACTGTCAGAGACGTC
GCGGCGCCGGGAGGCCCTAGCCACGACGACCAATACGCAAACCACGCAAC
ACCTAAGGCGACAGCTGGCTCAACTAGAGGCGGAACTTCGCTCTCTAAGA
GGAAGTTCTGGAAGTTCTGATTGCGCAACAGGAGGAGTTCCAGTGGCGAC
ACCTGGTAGAGACAGTGAAGCCTCCACCAGCAGCGGGATTAGCGCAGAAC
GACCGTCCAGAACACAGCATTTGTCTAGGGATTTGCTGCGCGCCGCCGAC
ACCGCTGAACAGAATCTGAGGCAATTGCTAACTGGCGTCGAAAATCTGCG
ACAGATGGCAGCTAGCCTAGAGCAACCGGCCCAGCCAACAGCAGCGCCCA
GAAGTCCCGATCTGTACACTGACTTTAACTGATCTCCCCGGGATGGAGGC
TTTAAAGTGGACGTTATATACGAAGATAGGTTATTGTTTTCTGTGTAAAC
ACTGTATCCCACGACTTCGCATTGAGCTTGTTTTTAGATGACCCCGCAAA
CATTTTATGTTTCCGTATTATCTGTTGCATTGGGTTATATTTGGTGGGAA
AATTAAGGGAGGGATGGGCAATGTGAGAATCAAAGCGCAAACTCGTGATG
TTGGTTGATAAAGCAAAATATATAATTCATACTTGATAAATCGATATAGC
ATATTGAAGGACCTAACTATCGACGGCTAGTGGAAATTACACTGCAATGT
TAAATGCCAGCCACTCCAGAAAAACGGCGATTCTGATCCGGGACAGGACG
TCCCGCACAGCGATTGAAAAGAAGAGCAAATGCGATATATTTTTTGTTAA
GAACAAAGGATTACCTAAGCACTTCAGTAGTTTGTGCTTCAGTACGTAGC
AAGCAAGAATTGAAATAAATTATTATGAGACAAAAAAAAAAAAAAAAAAA
A

SD07191.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)04053-RA 2689 l(3)04053-RA 162..2598 1..2437 12155 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22729422..22730253 832..1 4160 100 Minus
chr3L 24539361 chr3L 22728558..22729356 1630..832 3995 100 Minus
chr3L 24539361 chr3L 22727505..22728117 2431..1819 3050 99.8 Minus
chr3L 24539361 chr3L 22728174..22728367 1821..1628 970 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22740519..22741350 832..1 4160 100 Minus
3L 28110227 3L 22739655..22740453 1630..832 3995 100 Minus
3L 28110227 3L 22738596..22739214 2437..1819 3065 99.7 Minus
3L 28110227 3L 22739271..22739464 1821..1628 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22733619..22734450 832..1 4160 100 Minus
3L 28103327 3L 22732755..22733553 1630..832 3995 100 Minus
3L 28103327 3L 22731696..22732314 2437..1819 3065 99.6 Minus
3L 28103327 3L 22732371..22732564 1821..1628 970 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:22:35 has no hits.

SD07191.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:23:11 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22727505..22728115 1821..2431 99 <- Minus
chr3L 22728175..22728365 1630..1820 100 <- Minus
chr3L 22728559..22729355 833..1629 100 <- Minus
chr3L 22729422..22730253 1..832 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:54 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 1..1758 175..1932 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:39 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 1..1758 175..1932 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:27 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 1..1758 175..1932 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:18:48 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 1..1758 175..1932 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:44 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 1..1758 175..1932 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:17 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 35..2465 1..2431 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:39 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 35..2465 1..2431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:27 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 39..2469 1..2431 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:18:48 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 35..2465 1..2431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:44 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)04053-RA 39..2469 1..2431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:11 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22738602..22739212 1821..2431 99 <- Minus
3L 22739272..22739462 1630..1820 100 <- Minus
3L 22739656..22740452 833..1629 100 <- Minus
3L 22740519..22741350 1..832 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:11 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22738602..22739212 1821..2431 99 <- Minus
3L 22739272..22739462 1630..1820 100 <- Minus
3L 22739656..22740452 833..1629 100 <- Minus
3L 22740519..22741350 1..832 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:11 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22738602..22739212 1821..2431 99 <- Minus
3L 22739272..22739462 1630..1820 100 <- Minus
3L 22739656..22740452 833..1629 100 <- Minus
3L 22740519..22741350 1..832 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:27 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22731702..22732312 1821..2431 99 <- Minus
arm_3L 22732372..22732562 1630..1820 100 <- Minus
arm_3L 22732756..22733552 833..1629 100 <- Minus
arm_3L 22733619..22734450 1..832 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:53:44 Download gff for SD07191.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22732756..22733552 833..1629 100 <- Minus
3L 22731702..22732312 1821..2431 99 <- Minus
3L 22732372..22732562 1630..1820 100 <- Minus
3L 22733619..22734450 1..832 100   Minus

SD07191.pep Sequence

Translation from 174 to 1931

> SD07191.pep
MANGSATEAAATANPQQRIPQAAQQALLTETTMGSKDCAPAALGVNDLVA
DVCMNGRGADFPSIRTTTSTGGAGPAAASSSSFSFKHFLSSTGTVTAPTS
TVTSAAVQTSTGARPKVPQSASVSHMQPPDVNGSSASSRMKRSPRFSSFD
SQASLAEYASCGGGTSSSSGGSQSQHRLRPDHRLGHDAVQDALDNDDDDH
VALAQVRNTNRHYDERIDDDIFPSASNQQPAVGSRYVPRSYSNYDMPPHL
PGPSSSPRRRPTGNRDQRPTRLVLSAGPKMKLDLPLDTCNVAGGGAGGSA
AAASALPDFVQDHLPDAWCAGQDALSSPPNSPLVGAEASSGAVGLLPSSL
APRCSSAAALPGPTGEPTAGSTVKMLPDFLSDGSIIHSSQRLADVAIGLP
SNPIDSPPQEAEGTLQLSTLRQENERLQRELQEARAELNLQTRRASEFEQ
QLLQLSETSRRREALATTTNTQTTQHLRRQLAQLEAELRSLRGSSGSSDC
ATGGVPVATPGRDSEASTSSGISAERPSRTQHLSRDLLRAADTAEQNLRQ
LLTGVENLRQMAASLEQPAQPTAAPRSPDLYTDFN*

SD07191.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23447-PA 585 GF23447-PA 47..585 46..585 1550 67.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13169-PA 585 GG13169-PA 1..585 1..585 2256 89.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14767-PA 627 GH14767-PA 48..626 42..584 1130 51 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)04053-PA 585 CG11238-PA 1..585 1..585 2971 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11870-PA 653 GI11870-PA 1..653 1..585 1245 52.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18114-PA 129 GL18114-PA 4..129 459..585 356 68.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10857-PA 625 GA10857-PA 5..625 2..585 1763 67.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22080-PA 585 GM22080-PA 1..585 1..585 2909 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12055-PA 306 GD12055-PA 1..306 280..585 1494 96.4 Plus
Dsim\GD17557-PA 107 GD17557-PA 1..105 1..105 421 89.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13564-PA 638 GJ13564-PA 55..638 45..585 1349 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20567-PA 671 GK20567-PA 78..671 44..585 1203 54.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19491-PA 580 GE19491-PA 1..580 1..585 2332 88 Plus
Dyak\GE22702-PA 580 GE22702-PA 1..580 1..585 2329 87.9 Plus

SD07191.hyp Sequence

Translation from 174 to 1931

> SD07191.hyp
MANGSATEAAATANPQQRIPQAAQQALLTETTMGSKDCAPAALGVNDLVA
DVCMNGRGADFPSIRTTTSTGGAGPAAASSSSFSFKHFLSSTGTVTAPTS
TVTSAAVQTSTGARPKVPQSASVSHMQPPDVNGSSASSRMKRSPRFSSFD
SQASLAEYASCGGGTSSSSGGSQSQHRLRPDHRLGHDAVQDALDNDDDDH
VALAQVRNTNRHYDERIDDDIFPSASNQQPAVGSRYVPRSYSNYDMPPHL
PGPSSSPRRRPTGNRDQRPTRLVLSAGPKMKLDLPLDTCNVAGGGAGGSA
AAASALPDFVQDHLPDAWCAGQDALSSPPNSPLVGAEASSGAVGLLPSSL
APRCSSAAALPGPTGEPTAGSTVKMLPDFLSDGSIIHSSQRLADVAIGLP
SNPIDSPPQEAEGTLQLSTLRQENERLQRELQEARAELNLQTRRASEFEQ
QLLQLSETSRRREALATTTNTQTTQHLRRQLAQLEAELRSLRGSSGSSDC
ATGGVPVATPGRDSEASTSSGISAERPSRTQHLSRDLLRAADTAEQNLRQ
LLTGVENLRQMAASLEQPAQPTAAPRSPDLYTDFN*

SD07191.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)04053-PA 585 CG11238-PA 1..585 1..585 2971 100 Plus