Clone SD07269 Report

Search the DGRC for SD07269

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:69
Vector:pOT2
Associated Gene/Transcriptdel-RA
Protein status:SD07269.pep: gold
Preliminary Size:2936
Sequenced Size:3140

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9252 2002-12-13 Blastp of sequenced clone
CG9252 2003-01-01 Sim4 clustering to Release 3
del 2008-04-29 Release 5.5 accounting
del 2008-08-15 Release 5.9 accounting
del 2008-12-18 5.12 accounting

Clone Sequence Records

SD07269.complete Sequence

3140 bp (3140 high quality bases) assembled on 2002-12-13

GenBank Submission: BT003434

> SD07269.complete
ATCATGGAAAAGTTGGACAAAATAAGGATGAGCCAAAAACTGTCCTGCTG
GCAGCATATTCTGACCACGTTGGGGACGAGTTCCAAGACAGAGCAGGAAT
GGAATACTTTTTTCAAGGGGTTCCTCGAAAGTTGGAGAAAGCCCTACTGT
ATCCAAACCAGCTGCGATCCGAGCATACCGCTGAGAAAGGAGCTCTTGGT
CAGACCGAGGAAAGCCCTGCAAGAAAACCCGCATGGACCGGGGTCCACAC
TTCCAGAGTCCCCTGTTTTCCTGGAACCCATCAATTCCACCGCGCCGCGT
GAACATCCGAGTCCCAGCAAGTCACATTCAACAGGTTCAACAGGTTGTGA
TCCTGGTAATGGAGAAAGATCTCCAAGTGTTTCGAATAAAAATTCTAAGT
ATAAAAATCCTGGTAACTCCAAATATGCTAAAATCTGGAAGCGGAGTAAT
AATCATACGACTTCCATTTTCTCCAAAGCTCAAATTTCCAAGCGCAGAGA
TAAACTCTCAAGTACGAAGAAGCGGCCAGATACATGTGCACCAACTGATG
ATTCGCGCAAAAACCGAGAACCACGTGCTTGTGCTCCCAACAAAAATATT
TTCAAGACCAGAGAGACCAATGCTCCAAACTTGACGAAAAATTCATGTGC
TCTTCCAAATGTTCTTATATTAAGTCCCAACAGTGCGTCTAAAATAACAC
AACGTGGACATTCTGTTGGTCAGACGCAAGATTACAAAGCTTCTCCAGGC
AAAATAATCAAGCGTGTTCCCAGATATAGTTTACAATGCTTAAAGAAAAA
AACCGAGAAAGTACATAATAAAATAATGGACAAGCCTAAGAATAAACAGC
AGCCCCAGACTCCACCGCCATTTCTGCTCAATAACGAGTACACGGAATCA
AGCGACGACTCTGATGACCAACTGCCGCTTTCAGAATTGTCGCAAAAGAT
GAAAAGCAATAAACTGAATACCCTTTTCCTTTCTCGCAATGAAGATTGTA
GTCCTGCTCCTGAGAAAGTAAAGCTAAAAGGAGAACGTCCCGCACAAAAT
AAGAAAGAGCAGCTCACATGGGAGCCATCAATATTAACTAATTTAACCGA
TCTAGGCAAGCAAGTAGCAGAGCCCCTTCGAAAATCAGTTAAAAAATCTG
CCAAACAGCAGAAACCACGAGTTAGAGCCCCTCCTCAGGGAAAAAAAACG
TTACCTCAATTGCAAACAGGTTTAAAGACTCAGGACAAGCAATCAACTCA
CGAAATGATAAGTGAGCAGGCCAAAACCATCTCAGAAGCATCTGGACAGC
AGACATCTCAAGTCCAAAGTAGCTTGTCGCCAAACAATATAAGGAACAAT
AGCGTAAAATTAATAAGCGCCAAAACGTTGATGCCAGCCCAGAGATCACA
AGACTATTCCCCAAACAAAATGCAAGTGGGTCAGCCACTGGGTTTCGCCA
TAGAATTACCTAGTCCCGTGGACGGCAAGGAAGCCAGCGTCGAGATCGAT
ACCCAGCTGGTCCATACCAGCAAGTTCTTAGAGAATATGACAAGACCATC
GACAGTGGAGGTACACAAATTCGATTTAATGGACATCTTTATGGGAGAAA
ATGAAAAGTTGGACTATGAGTACGACGATGATGATGTGCTCTCGGTGGCT
GCCTCCTGGAATGGACTCGACGATGAGAATGTGCCTGAGGACGAACCGAG
GAAGGAAGCGAAAACTGCAGAGCAGTTACCCAAACCCGAGCCTTCCACAG
AAACACTTAAGCCAATCGAAAAAGAAAACGCACAAAAAATGCAAAGCATA
AAATCGTTTCAAATTCCTAAACTTAATGCTAAAAATCTGAAGACACAGCC
CTCCGTGATGCGTTCCATCTACGAGAATGAAGAGTTGGAAAAGAATAAGG
TGTTGGCAAAGCCTGCGCCGCCTTCACTAGTGCATCAACCCTTAGCTGAA
TCCAATCGTAACCAACGGGACGAAGCAACTGCTGCCCGACGGGCCAAAGA
AACATTCCCAGTATTTGCTCCACTATATCGTGTAGCACCAGAATCGGCAG
CTACTCTGGTCAGCGCCAACAGCCAACAGGTTATACCACAAGTATACTTT
TCCACCTCCAACCAAGATGGTGTTAATTGGATCAAAGATGTGTTTGGGAT
AAGGTGCATGCAAAGTGTAGACAACAAATGCATCTCTATTAATTGTGATC
ATACGATGAACAGTTTGGGTGAAGTACAGAAACGACTGATGAGGATGGAC
GAGGACACTTTGCTGAGCCTATACCGACAAACGATACGAAGCTTTTTCCT
GTTTCAGACCTACTACACCTCGTTCGTGGATATCTTCAAATTTCGCAATC
TCTGGCAGTATCTGCTAATCATGCTGGTCGACTGTCGCTTGTACAAAAGC
ATTTCAGCTCCCCTACTGGCACACGTCTATGAAGCTCTCAGTAAGTGCGG
TATGCAGAAAGAGGCAGTGAAAAGGATAATGGAGCATGTGTGGTTGCCAT
GCAAAGCTCACAAATATCGGGATCTGATGCTAACGACTCTAAATATTCTG
TCCAACGCCAACTGGGAGGATTATTGCGATAAGCTAACTCAGCTGGACAA
GGATTATAACTTTGAGATACCCCATAAGAACTTGATTACCATACTTAAAT
CCTCCGTAGACTGCTCAGATAAATTTGCAAACGCCCTTAAGTTGATCACC
CTCCATCCAAATTCTATTCGTACCAACGAAACTATTATGTCGATTTTAAG
CAACGCATCGAAAAGCTACAGCTACATGCATAATGAAAGTGCGAGCGCAA
GCCAGGGGCCGCCAGGAGCGGCCTCGTTTCTTGCACCACCTGCTGCTATT
CAGCCTCCACACACCACAGTTCCTAATTTTGGATATTTGCCAAACCCTAG
CTTTCATTATTCCAATGAATATGCGATCAATATACATAATTTTGATTAAG
CAAATGAAAATGAATGAAAAGTATCTAACATATACTTGACATATATCATA
ATCTCTTCATTATTGATGCACATAATTGAATAAATTAAGTTATCAAATTA
TTGTTCCTATTTGATTATTACAAATATCAATAAAGTAAATTTTGCGTTAT
ACTTTCTATTTAACAAAAAAAAAAAAAAAAAAAAAAAAAA

SD07269.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
del-RA 3315 del-RA 202..3314 1..3113 15520 99.9 Plus
del.a 3229 del.a 593..3228 478..3113 13135 99.8 Plus
del.b 3306 del.b 1555..3305 1363..3113 8725 99.8 Plus
del.b 3306 del.b 202..1558 1..1357 6755 99.8 Plus
del.a 3229 del.a 182..593 1..412 2060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21143639..21145389 3113..1363 8725 99.9 Minus
chr2L 23010047 chr2L 21145438..21146640 1368..166 5985 99.8 Minus
chr2L 23010047 chr2L 21146704..21146869 166..1 830 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21145135..21146885 3113..1363 8725 99.9 Minus
2L 23513712 2L 21146934..21148136 1368..166 5985 99.8 Minus
2L 23513712 2L 21148200..21148365 166..1 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21145135..21146885 3113..1363 8725 99.8 Minus
2L 23513712 2L 21146934..21148136 1368..166 5985 99.8 Minus
2L 23513712 2L 21148200..21148365 166..1 830 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:45:55 has no hits.

SD07269.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:46:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21143638..21145389 1363..3114 99 <- Minus
chr2L 21145444..21146640 166..1362 99 <- Minus
chr2L 21146705..21146869 1..165 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:02:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 1..2946 4..2949 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:23 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 1..2946 4..2949 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:14:34 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 1..2946 4..2949 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 1..2946 4..2949 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:00 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 1..2946 4..2949 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:12 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 182..3294 1..3114 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:22 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 182..3294 1..3114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:14:34 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 53..3163 1..3111 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 182..3294 1..3114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:00 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
del-RA 53..3163 1..3111 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21145134..21146885 1363..3114 99 <- Minus
2L 21146940..21148136 166..1362 99 <- Minus
2L 21148201..21148365 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21145134..21146885 1363..3114 99 <- Minus
2L 21146940..21148136 166..1362 99 <- Minus
2L 21148201..21148365 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:59 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21145134..21146885 1363..3114 99 <- Minus
2L 21146940..21148136 166..1362 99 <- Minus
2L 21148201..21148365 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:14:34 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21145134..21146885 1363..3114 99 <- Minus
arm_2L 21146940..21148136 166..1362 99 <- Minus
arm_2L 21148201..21148365 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:40 Download gff for SD07269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21145134..21146885 1363..3114 99 <- Minus
2L 21146940..21148136 166..1362 99 <- Minus
2L 21148201..21148365 1..165 100   Minus

SD07269.hyp Sequence

Translation from 0 to 2948

> SD07269.hyp
IMEKLDKIRMSQKLSCWQHILTTLGTSSKTEQEWNTFFKGFLESWRKPYC
IQTSCDPSIPLRKELLVRPRKALQENPHGPGSTLPESPVFLEPINSTAPR
EHPSPSKSHSTGSTGCDPGNGERSPSVSNKNSKYKNPGNSKYAKIWKRSN
NHTTSIFSKAQISKRRDKLSSTKKRPDTCAPTDDSRKNREPRACAPNKNI
FKTRETNAPNLTKNSCALPNVLILSPNSASKITQRGHSVGQTQDYKASPG
KIIKRVPRYSLQCLKKKTEKVHNKIMDKPKNKQQPQTPPPFLLNNEYTES
SDDSDDQLPLSELSQKMKSNKLNTLFLSRNEDCSPAPEKVKLKGERPAQN
KKEQLTWEPSILTNLTDLGKQVAEPLRKSVKKSAKQQKPRVRAPPQGKKT
LPQLQTGLKTQDKQSTHEMISEQAKTISEASGQQTSQVQSSLSPNNIRNN
SVKLISAKTLMPAQRSQDYSPNKMQVGQPLGFAIELPSPVDGKEASVEID
TQLVHTSKFLENMTRPSTVEVHKFDLMDIFMGENEKLDYEYDDDDVLSVA
ASWNGLDDENVPEDEPRKEAKTAEQLPKPEPSTETLKPIEKENAQKMQSI
KSFQIPKLNAKNLKTQPSVMRSIYENEELEKNKVLAKPAPPSLVHQPLAE
SNRNQRDEATAARRAKETFPVFAPLYRVAPESAATLVSANSQQVIPQVYF
STSNQDGVNWIKDVFGIRCMQSVDNKCISINCDHTMNSLGEVQKRLMRMD
EDTLLSLYRQTIRSFFLFQTYYTSFVDIFKFRNLWQYLLIMLVDCRLYKS
ISAPLLAHVYEALSKCGMQKEAVKRIMEHVWLPCKAHKYRDLMLTTLNIL
SNANWEDYCDKLTQLDKDYNFEIPHKNLITILKSSVDCSDKFANALKLIT
LHPNSIRTNETIMSILSNASKSYSYMHNESASASQGPPGAASFLAPPAAI
QPPHTTVPNFGYLPNPSFHYSNEYAINIHNFD*

SD07269.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
del-PC 981 CG9252-PC 1..981 2..982 5137 100 Plus
del-PA 981 CG9252-PA 1..981 2..982 5137 100 Plus
del-PB 978 CG9252-PB 1..978 2..982 5110 99.7 Plus

SD07269.pep Sequence

Translation from 3 to 2948

> SD07269.pep
MEKLDKIRMSQKLSCWQHILTTLGTSSKTEQEWNTFFKGFLESWRKPYCI
QTSCDPSIPLRKELLVRPRKALQENPHGPGSTLPESPVFLEPINSTAPRE
HPSPSKSHSTGSTGCDPGNGERSPSVSNKNSKYKNPGNSKYAKIWKRSNN
HTTSIFSKAQISKRRDKLSSTKKRPDTCAPTDDSRKNREPRACAPNKNIF
KTRETNAPNLTKNSCALPNVLILSPNSASKITQRGHSVGQTQDYKASPGK
IIKRVPRYSLQCLKKKTEKVHNKIMDKPKNKQQPQTPPPFLLNNEYTESS
DDSDDQLPLSELSQKMKSNKLNTLFLSRNEDCSPAPEKVKLKGERPAQNK
KEQLTWEPSILTNLTDLGKQVAEPLRKSVKKSAKQQKPRVRAPPQGKKTL
PQLQTGLKTQDKQSTHEMISEQAKTISEASGQQTSQVQSSLSPNNIRNNS
VKLISAKTLMPAQRSQDYSPNKMQVGQPLGFAIELPSPVDGKEASVEIDT
QLVHTSKFLENMTRPSTVEVHKFDLMDIFMGENEKLDYEYDDDDVLSVAA
SWNGLDDENVPEDEPRKEAKTAEQLPKPEPSTETLKPIEKENAQKMQSIK
SFQIPKLNAKNLKTQPSVMRSIYENEELEKNKVLAKPAPPSLVHQPLAES
NRNQRDEATAARRAKETFPVFAPLYRVAPESAATLVSANSQQVIPQVYFS
TSNQDGVNWIKDVFGIRCMQSVDNKCISINCDHTMNSLGEVQKRLMRMDE
DTLLSLYRQTIRSFFLFQTYYTSFVDIFKFRNLWQYLLIMLVDCRLYKSI
SAPLLAHVYEALSKCGMQKEAVKRIMEHVWLPCKAHKYRDLMLTTLNILS
NANWEDYCDKLTQLDKDYNFEIPHKNLITILKSSVDCSDKFANALKLITL
HPNSIRTNETIMSILSNASKSYSYMHNESASASQGPPGAASFLAPPAAIQ
PPHTTVPNFGYLPNPSFHYSNEYAINIHNFD*

SD07269.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15157-PA 1370 GF15157-PA 666..985 578..901 634 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21522-PA 1030 GG21522-PA 1..1030 7..981 2709 58.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13221-PA 634 GH13221-PA 252..584 536..886 349 28.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
del-PC 981 CG9252-PC 1..981 1..981 5137 100 Plus
del-PA 981 CG9252-PA 1..981 1..981 5137 100 Plus
del-PB 978 CG9252-PB 1..978 1..981 5110 99.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25473-PA 661 GA25473-PA 400..621 653..884 433 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23276-PA 976 GM23276-PA 1..976 1..981 3882 78.7 Plus
Dsec\GM13366-PA 115 GM13366-PA 1..106 1..107 267 54.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21652-PA 962 GD21652-PA 1..962 1..981 3791 77.8 Plus
Dsim\GD15723-PA 113 GD15723-PA 1..104 1..107 254 54.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16287-PA 1189 GJ16287-PA 696..1189 497..980 360 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13777-PA 842 GK13777-PA 452..784 545..900 528 37.3 Plus
Dwil\GK18873-PA 372 GK18873-PA 28..267 634..885 459 41.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13002-PA 1041 GE13002-PA 4..1039 1..976 2776 59.5 Plus