Clone SD07421 Report

Search the DGRC for SD07421

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:74
Well:21
Vector:pOT2
Associated Gene/TranscriptVhaSFD-RA
Protein status:SD07421.pep: gold
Preliminary Size:2209
Sequenced Size:2157

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17332 2001-01-01 Release 2 assignment
CG17332 2001-07-04 Blastp of sequenced clone
CG17332 2003-01-01 Sim4 clustering to Release 3
VhaSFD 2008-04-29 Release 5.5 accounting
VhaSFD 2008-08-15 Release 5.9 accounting
VhaSFD 2008-12-18 5.12 accounting

Clone Sequence Records

SD07421.complete Sequence

2157 bp (2157 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052122

> SD07421.complete
CTCGTGCCGGTCAGCTGAATTTCGGTGCTGTGTCGCAGTAGTGTGAAAAA
CACTCGGTTGTATTTGATAGATTTTCATAAATTCTGTGCTTGAATTTGTG
TGTGCCGAGCGTCGTCTCAAGAAAGCCCTCAAAATGACTACCGCCTTGTA
TTTGCCCGAGGAGAACATTGATATGATTGCTGCCACCTCGGTGCTGCAGC
AGCAGGCGGCGGACATCCGCACCAGGACGATCAACTGGGCTTCGTACATG
CAGTCGCAGATGATCAGCGAGGAGGACTACAAGGCAATCAGCGCGTTGGA
CAAGTCACGTGCCAGCTTCTTGGCCCAGAACTCCAGCCAGGTGGTGAAGA
CGCTGCTTAATCTGGTTTCGCATCTGTCGAAGGACTCCACCATTCAGTAC
ATCCTTGTGCTGCTCGACGATTTGCTGCAGGAGGATCGCTCCCGTGTGGA
TCTATTCCATGACACAGCCGGCAAGCTGAAGCAGTGCATCTGGGGTCCGT
TCCTGAACCTGCTGAACCGTCAGGATGGCTTTATTGTCAACATGTCGTCG
CGCATCCTGGCCAAATTCGCCTGCTGGGGCCATGAGACCATGCCCAAGTC
CGACCTGAACTTCTATCTGCAGTTCCTGAAGGATCAGCTGGCCAGCAATA
ACAACGAATACATCCAGTCGGTGGCCCGGTGCCTGCAGATGATGCTCCGT
GTGGATGAGTATCGATTTGCCTTTGTGGGAGTCGACGGAATCAGCACTCT
GATCCGTATCTTGTCGACCCGTGTCAACTTCCAGGTGCAATACCAGTTGA
TCTTTTGCCTGTGGGTGCTGACCTTCAATCCCCTGCTGGCCGCCAAGATG
AATAAGTTCAGCGTGATCCCCATCCTGGCTGATATCCTCAGCGATTGTGC
CAAGGAGAAGGTGACACGCATTATCCTCGCGGTCTTCCGCAATCTGATCG
AGAAGCCGGAGGATTCATCGGTGGCCAAGGACCATTGCATCGCCATGGTC
CAGTGCAAGGTGCTGAAGCAGCTATCCATCCTGGAGCAGCGTCGCTTCGA
CGACGAGGACATTACCGCCGACGTAGAGTACCTGAGCGAGAAGCTCCAGA
ATTCGGTGCAAGACTTGAGCTCCTTTGATGAGTACGCCACAGAGGTGCGC
AGCGGTCGCTTGGAATGGTCGCCTGTGCACAAGTCGGCCAAGTTCTGGCG
CGAGAATGCCCAGCGCCTAAACGAAAAGAACTACGAGTTGCTGCGCATCC
TCGTCCACCTCCTGGAAACCTCAAAAGATGCCATCATCCTTTCCGTCGCC
TGCTTCGACATCGGGGAGTATGTGCGCCACTATCCCCGCGGCAAGCACGT
CTTGGAACAACTCGGAGGCAAGCAGATCGTGATGCAGCATCTTGGCCACG
AGGATCCCAATGTGCGATACGAAGCCCTGCTGGCTGTGCAAAAGCTGATG
GTACACAATTGGGAATACCTGGGCAAGCAGCTGGAGAAGGAAAACGAGAA
CCAGAAACAAGGTGCCGCCCCCATCGCTGGCAAGGCCTAGGTGGTCTAAT
CAACAAGTCATCCATGCACAGGCACACAACAAATATTTTAGCCAGGCCGC
CAGCCTGAAACCTTAACTAACAATAAGAGTCGTAGGGGGATCTATATCTC
CAGCCTGATCCTCCGCTTCTCCATCACACTTGCAATGATGTTTGTTCTTG
CTATTTTTAAGCGCATGTTTGTTCCCCGTTTAAACTAAGTTTTTGTTAGC
CCATACCTCCGTGTACGCCCATTTACACCCTCAGTTCTTAGAAAGTATTG
AGAGAAAAATTCGATTTTTTGTTGGCATTCCAAAAAGCAATTCACTGTAA
TGGCAGAACAAATACAAGCAACTATCCTCTACAAATTGTTCCATTCAATT
CGATTGTTTATATATTTTGTTGTTATTATTATTTGTGTTCTTAATTTTAT
GAGTGCGCCGCTGTACAGAGTTTTTCTAAACCAGATGATATGCGCTTCTT
ACGTTTATATAGTCGCATCTGCGCATCCACATCTAAGCAAAAAACGAAAC
TAAAGAAAACAAAAAATATATTGTATAAACCTATCAAGTATTTCTTTCAT
TAAAAAAAAAATAAATCAAATAAGCATAATTAAAACGAAAAAAAAAAAAA
AAAAAAA

SD07421.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
VhaSFD-RA 2307 VhaSFD-RA 96..1856 10..1770 8790 99.9 Plus
VhaSFD.b 2351 VhaSFD.b 36..1488 10..1462 7265 100 Plus
VhaSFD-RB 2469 VhaSFD-RB 898..2018 650..1770 5590 99.9 Plus
VhaSFD-RB 2469 VhaSFD-RB 36..675 10..649 3200 100 Plus
VhaSFD.b 2351 VhaSFD.b 1894..2262 1774..2142 1830 99.7 Plus
VhaSFD-RA 2307 VhaSFD-RA 1850..2218 1774..2142 1830 99.7 Plus
VhaSFD-RB 2469 VhaSFD-RB 2012..2380 1774..2142 1830 99.7 Plus
VhaSFD.b 2351 VhaSFD.b 1591..1900 1461..1770 1535 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16721964..16722630 2137..1461 3185 98.4 Minus
chr2L 23010047 chr2L 16722964..16723528 1347..783 2825 100 Minus
chr2L 23010047 chr2L 16725751..16726230 649..170 2400 100 Minus
chr2L 23010047 chr2L 16726371..16726531 170..10 805 100 Minus
chr2L 23010047 chr2L 16723588..16723725 787..650 690 100 Minus
chr2L 23010047 chr2L 16722789..16722903 1462..1348 575 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:50:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16723227..16723898 2142..1461 3210 98.4 Minus
2L 23513712 2L 16724232..16724796 1347..783 2825 100 Minus
2L 23513712 2L 16727010..16727489 649..170 2400 100 Minus
2L 23513712 2L 16727630..16727790 170..10 805 100 Minus
2L 23513712 2L 16724856..16724993 787..650 690 100 Minus
2L 23513712 2L 16724057..16724171 1462..1348 575 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16724232..16724796 1347..783 2825 100 Minus
2L 23513712 2L 16727010..16727489 649..170 2400 100 Minus
2L 23513712 2L 16723227..16723595 2142..1774 1830 99.7 Minus
2L 23513712 2L 16723589..16723898 1770..1461 1535 99.6 Minus
2L 23513712 2L 16727630..16727790 170..10 805 100 Minus
2L 23513712 2L 16724856..16724993 787..650 690 100 Minus
2L 23513712 2L 16724057..16724171 1462..1348 575 100 Minus
Blast to na_te.dros performed 2019-03-15 19:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1189..1418 1898..2135 144 57.4 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6592..6644 1950..1899 118 71.7 Minus

SD07421.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:48:50 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16726371..16726534 7..170 99   Minus
chr2L 16721964..16722629 1462..2137 98 <- Minus
chr2L 16722790..16722903 1348..1461 100 <- Minus
chr2L 16722964..16723526 785..1347 100 <- Minus
chr2L 16723591..16723725 650..784 100 <- Minus
chr2L 16725751..16726229 171..649 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:03:14 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 1..1407 134..1540 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:59 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 1..1407 134..1540 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:14:58 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 1..1407 134..1540 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:12 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 1..1407 134..1540 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:36 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 1..1407 134..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:51 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 33..2153 7..2137 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:58 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 33..2153 7..2137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:14:58 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 34..2154 7..2137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:12 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 33..2153 7..2137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:36 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
VhaSFD-RA 34..2154 7..2137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:50 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16727630..16727793 7..170 99   Minus
2L 16723232..16723897 1462..2137 98 <- Minus
2L 16724058..16724171 1348..1461 100 <- Minus
2L 16724232..16724794 785..1347 100 <- Minus
2L 16724859..16724993 650..784 100 <- Minus
2L 16727010..16727488 171..649 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:50 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16727630..16727793 7..170 99   Minus
2L 16723232..16723897 1462..2137 98 <- Minus
2L 16724058..16724171 1348..1461 100 <- Minus
2L 16724232..16724794 785..1347 100 <- Minus
2L 16724859..16724993 650..784 100 <- Minus
2L 16727010..16727488 171..649 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:50 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16727630..16727793 7..170 99   Minus
2L 16723232..16723897 1462..2137 98 <- Minus
2L 16724058..16724171 1348..1461 100 <- Minus
2L 16724232..16724794 785..1347 100 <- Minus
2L 16724859..16724993 650..784 100 <- Minus
2L 16727010..16727488 171..649 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:14:58 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16724058..16724171 1348..1461 100 <- Minus
arm_2L 16724859..16724993 650..784 100 <- Minus
arm_2L 16723232..16723897 1462..2137 98 <- Minus
arm_2L 16724232..16724794 785..1347 100 <- Minus
arm_2L 16727010..16727488 171..649 100 <- Minus
arm_2L 16727630..16727793 7..170 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:29 Download gff for SD07421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16723232..16723897 1462..2137 98 <- Minus
2L 16724058..16724171 1348..1461 100 <- Minus
2L 16724232..16724794 785..1347 100 <- Minus
2L 16724859..16724993 650..784 100 <- Minus
2L 16727010..16727488 171..649 100 <- Minus
2L 16727630..16727793 7..170 99   Minus

SD07421.pep Sequence

Translation from 133 to 1539

> SD07421.pep
MTTALYLPEENIDMIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYK
AISALDKSRASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQE
DRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGH
ETMPKSDLNFYLQFLKDQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGV
DGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKFSVIPILAD
ILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSIL
EQRRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHK
SAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHY
PRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMVHNWEYLGKQL
EKENENQKQGAAPIAGKA*

SD07421.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24362-PA 545 GF24362-PA 250..545 173..468 1594 99.7 Plus
Dana\GF24362-PA 545 GF24362-PA 1..182 1..182 900 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20115-PA 545 GG20115-PA 250..545 173..468 1537 96.3 Plus
Dere\GG20115-PA 545 GG20115-PA 1..182 1..182 917 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10362-PA 546 GH10362-PA 227..546 149..468 1577 91.9 Plus
Dgri\GH10362-PA 546 GH10362-PA 1..204 1..204 856 77.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
VhaSFD-PE 468 CG17332-PE 1..468 1..468 2390 100 Plus
VhaSFD-PA 468 CG17332-PA 1..468 1..468 2390 100 Plus
VhaSFD-PD 441 CG17332-PD 1..440 1..440 2238 100 Plus
VhaSFD-PB 542 CG17332-PB 120..542 35..468 1520 73 Plus
VhaSFD-PB 542 CG17332-PB 1..182 1..182 887 96.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21354-PA 545 GI21354-PA 250..545 173..468 1587 99.3 Plus
Dmoj\GI21354-PA 545 GI21354-PA 1..182 1..182 874 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19340-PA 548 GL19340-PA 253..548 173..468 1585 99.3 Plus
Dper\GL19340-PA 548 GL19340-PA 1..181 1..181 918 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14464-PA 548 GA14464-PA 253..548 173..468 1585 99.3 Plus
Dpse\GA14464-PA 548 GA14464-PA 1..181 1..181 918 94.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17165-PA 545 GM17165-PA 250..545 173..468 1597 100 Plus
Dsec\GM17165-PA 545 GM17165-PA 1..182 1..182 914 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21903-PA 545 GD21903-PA 250..545 173..468 1596 100 Plus
Dsim\GD21903-PA 545 GD21903-PA 1..182 1..182 914 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11146-PA 541 GJ11146-PA 246..541 173..468 1570 98 Plus
Dvir\GJ11146-PA 541 GJ11146-PA 1..181 1..181 893 90.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15126-PA 541 GK15126-PA 246..541 173..468 1570 99 Plus
Dwil\GK15126-PA 541 GK15126-PA 1..182 1..182 889 90.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13171-PA 545 GE13171-PA 250..545 173..468 1538 96.3 Plus
Dyak\GE13171-PA 545 GE13171-PA 1..182 1..182 914 94.5 Plus

SD07421.hyp Sequence

Translation from 133 to 1539

> SD07421.hyp
MTTALYLPEENIDMIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYK
AISALDKSRASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQE
DRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGH
ETMPKSDLNFYLQFLKDQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGV
DGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKFSVIPILAD
ILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSIL
EQRRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHK
SAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHY
PRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMVHNWEYLGKQL
EKENENQKQGAAPIAGKA*

SD07421.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
VhaSFD-PE 468 CG17332-PE 1..468 1..468 2390 100 Plus
VhaSFD-PA 468 CG17332-PA 1..468 1..468 2390 100 Plus
VhaSFD-PD 441 CG17332-PD 1..440 1..440 2238 100 Plus
VhaSFD-PB 542 CG17332-PB 120..542 35..468 1520 73 Plus
VhaSFD-PB 542 CG17332-PB 1..182 1..182 887 96.2 Plus