Clone SD07518 Report

Search the DGRC for SD07518

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:75
Well:18
Vector:pOT2
Associated Gene/TranscriptSpp-RA
Protein status:SD07518.pep: gold
Preliminary Size:1865
Sequenced Size:1771

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11840 2001-01-01 Release 2 assignment
CG11840 2001-12-12 Blastp of sequenced clone
CG11840 2003-01-01 Sim4 clustering to Release 3
Spp 2008-04-29 Release 5.5 accounting
Spp 2008-08-15 Release 5.9 accounting
Spp 2008-12-18 5.12 accounting

Clone Sequence Records

SD07518.complete Sequence

1771 bp (1771 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070713

> SD07518.complete
TGACGTGTGCTGCTGCGTGTCATTTCGCTTTTCACCCCCGCAAGCCGGCG
ATTTTCAGGAACGGATTGGATTGGACAGCACAGCATGGCGGAGGAAGTCA
TCGGAACCGTTAAGGAGGTGCTGAAGGGCATCATCGAGAATGTGAACGCG
CCGAAGAACGAGTCGGCGCCGGGCGAGAAGAAGCCCTCGACTCCGGAGGG
CATGGCGGTGGCCTACAGCAGCCTGGTGGTGATGGCCATGCTGCCCATCA
TCTTCGGCTCCATCCGCTCCGTGAAGCTGCACAAGCTGAAGAAGTCAACG
GGCGAGAAGGCGGACACGATGACCAAGAAGGACGCCATGTACTTCCCGCT
GATCGCGTCGGCAGCCCTCTTCGGGCTGTACCTGTTCTTCAAGATCTTCC
AGAAGGTGCACATCAACTACCTGCTCACCGGCTACTTCTTCGTGCTGGGA
GTTATTGCTCTGGCGCACCTGCTCAGTCCGGTGATCAACTCGCTGATGCC
CGCCGCCGTGCCGAAGGTGCCCTTCCACATCCTGTTCACTAAGGGGGAGG
GCAAGCACAAGGAAGACATCGTTAACTACAAGTTCTCCACGCACGACATT
GTCTGCCTGGTGATCTCCTCGGCGATCGGAGTGTGGTACCTGCTCAAGAA
GCACTGGATCGCCAACAATCTGTTCGGTCTGGCCTTCGCCATCAACGGCG
TGGAGATGCTGCACCTGAACAACTTCGTCACGGGCGTCATCTTGCTGAGC
GGCCTGTTCTTCTACGACATCTTCTGGGTATTCGGCACCAACGTGATGGT
CACCGTGGCCAAGAGCTTCGAGGCGCCCATCAAGCTAGTGTTCCCCCAGG
ACCTGATCGAGAACGGCCTGAACGCCTCGAACTTCGCAATGCTGGGACTA
GGCGACATCGTTATTCCGGGCATCTTCATCGCTCTGCTGCTGCGCTTCGA
CGACAGCAAGAAGCGCAAGACGCGCATCTACTTCTACTCCACGCTGATTG
CCTACTTCCTTGGCCTGCTGGCCACCATCTTCGTGATGCATGTGTTCAAG
CATGCGCAGCCGGCTCTGCTCTACCTGGTGCCAGCCTGCATGGGCACGCC
CCTCCTGGTGGCCCTCATCCGCGGCGAGCTGAAGGTGCTCTTTGCCTATG
AAGATCATCCCGAGGAGAAGCCCGAAAAGAAGGAGAAGAAGGAGAAGGAC
GAGGGCGTCAGCTCGTCCGGCAGCAAAAAGAAGGAGTCGAAAAAGGGCAA
GTAGAGCCGGGAGGACGCAACATCCGAACAACATCCCCACTCGTTCCATC
GTAAATGTCTTCTGCAGCTAGCCAAGCTCCCTTTCGTTTCGATATGGCTT
CTCCATCTACCGCAGTCCATAGCTCATATGGACTAACACCGCTACAAAAG
ACGATTCACTTACTGAGTTAGTTATGTACGTTCCTTGGCCAGGCACAACA
ATCTTATTTAGTTCGGTTAGGTTACAATTGTAGAAAATGTTCCCTCGACT
TTTTTACCGCAATCAATTTAAATATGTATTTCAAATATTTCTGTGGCTCC
GCACAGGAGGCTTATATGTTTAAGAACAGTTTAGATACAAATATATTCCA
ATTTTTGTAAACAGTGCAATTTTGACTACGAATTCTACATTGCATTTCTT
AAAACTAATGCAGTAATTTGTGTAAACAGTAATGCGAATAAATTTTAATT
CTAACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

SD07518.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-RA 1868 Spp-RA 112..1822 1..1711 8540 99.9 Plus
Spp.a 1742 Spp.a 35..1168 1..1134 5655 99.9 Plus
Spp.a 1742 Spp.a 1169..1734 1146..1711 2830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 543420..544272 1145..293 4250 99.9 Minus
chr2L 23010047 chr2L 542790..543353 1709..1146 2805 99.8 Minus
chr2L 23010047 chr2L 544337..544630 294..1 1470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:51:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 543416..544268 1145..293 4250 99.9 Minus
2L 23513712 2L 542784..543349 1711..1146 2830 100 Minus
2L 23513712 2L 544333..544626 294..1 1470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 543416..544268 1145..293 4250 99.8 Minus
2L 23513712 2L 542784..543349 1711..1146 2830 100 Minus
2L 23513712 2L 544333..544626 294..1 1470 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:53:26 has no hits.

SD07518.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:54:17 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 544337..544630 1..294 100   Minus
chr2L 542790..543353 1146..1709 99 <- Minus
chr2L 543420..544270 295..1145 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:03:20 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 85..1254 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:57 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 85..1254 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:02 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 85..1254 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:05 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 85..1254 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:35 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 85..1254 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:10 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 2..1710 1..1709 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:57 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 2..1710 1..1709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:02 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 28..1736 1..1709 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:06 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 2..1710 1..1709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:35 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 28..1736 1..1709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:17 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
2L 542786..543349 1146..1709 100 <- Minus
2L 543416..544266 295..1145 99 <- Minus
2L 544333..544626 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:17 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
2L 542786..543349 1146..1709 100 <- Minus
2L 543416..544266 295..1145 99 <- Minus
2L 544333..544626 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:17 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
2L 542786..543349 1146..1709 100 <- Minus
2L 543416..544266 295..1145 99 <- Minus
2L 544333..544626 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:02 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 542786..543349 1146..1709 100 <- Minus
arm_2L 543416..544266 295..1145 99 <- Minus
arm_2L 544333..544626 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:26 Download gff for SD07518.complete
Subject Subject Range Query Range Percent Splice Strand
2L 542786..543349 1146..1709 100 <- Minus
2L 543416..544266 295..1145 99 <- Minus
2L 544333..544626 1..294 100   Minus

SD07518.pep Sequence

Translation from 84 to 1253

> SD07518.pep
MAEEVIGTVKEVLKGIIENVNAPKNESAPGEKKPSTPEGMAVAYSSLVVM
AMLPIIFGSIRSVKLHKLKKSTGEKADTMTKKDAMYFPLIASAALFGLYL
FFKIFQKVHINYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIL
FTKGEGKHKEDIVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLA
FAINGVEMLHLNNFVTGVILLSGLFFYDIFWVFGTNVMVTVAKSFEAPIK
LVFPQDLIENGLNASNFAMLGLGDIVIPGIFIALLLRFDDSKKRKTRIYF
YSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLLVALIRGELK
VLFAYEDHPEEKPEKKEKKEKDEGVSSSGSKKKESKKGK*

SD07518.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24718-PA 389 GF24718-PA 1..358 1..358 1809 96.4 Plus
Dana\GF16778-PA 435 GF16778-PA 67..432 46..366 346 28.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24644-PA 389 GG24644-PA 1..389 1..389 1991 98.5 Plus
Dere\GG11430-PA 417 GG11430-PA 49..414 46..366 336 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10510-PA 390 GH10510-PA 1..359 1..358 1747 92.5 Plus
Dgri\GH22306-PA 424 GH22306-PA 56..421 46..366 338 28.1 Plus
Dgri\GH22226-PA 92 GH22226-PA 1..75 1..74 276 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-PA 389 CG11840-PA 1..389 1..389 1983 100 Plus
SppL-PF 417 CG17370-PF 49..414 46..366 335 27.9 Plus
SppL-PC 417 CG17370-PC 49..414 46..366 335 27.9 Plus
SppL-PB 417 CG17370-PB 49..414 46..366 335 27.9 Plus
SppL-PA 417 CG17370-PA 49..414 46..366 335 27.9 Plus
SppL-PE 422 CG17370-PE 49..419 46..366 329 27.5 Plus
SppL-PD 422 CG17370-PD 49..419 46..366 329 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18028-PA 391 GI18028-PA 1..359 1..358 1741 91.1 Plus
Dmoj\GI22975-PA 422 GI22975-PA 54..419 46..366 338 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19257-PA 391 GL19257-PA 1..360 1..358 1718 91.9 Plus
Dper\GL21795-PA 434 GL21795-PA 66..430 46..362 347 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11227-PA 391 GA11227-PA 1..360 1..358 1718 91.9 Plus
Dpse\GA14486-PA 432 GA14486-PA 64..428 46..362 347 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16661-PA 376 GM16661-PA 1..376 1..389 1913 95.6 Plus
Dsec\GM10271-PA 417 GM10271-PA 49..414 46..366 336 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22952-PA 374 GD22952-PA 1..374 1..389 1871 94.1 Plus
Dsim\GD21240-PA 417 GD21240-PA 49..414 46..366 336 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19708-PA 398 GJ19708-PA 1..363 1..358 1695 90.6 Plus
Dvir\GJ22735-PA 280 GJ22735-PA 59..277 46..252 168 24.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14664-PA 406 GK14664-PA 1..369 1..361 1719 90.5 Plus
Dwil\GK12863-PA 432 GK12863-PA 64..428 46..362 345 28.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16062-PA 389 GE16062-PA 1..389 1..389 2002 99 Plus
Dyak\GE23625-PA 417 GE23625-PA 49..414 46..366 336 28.1 Plus

SD07518.hyp Sequence

Translation from 84 to 1253

> SD07518.hyp
MAEEVIGTVKEVLKGIIENVNAPKNESAPGEKKPSTPEGMAVAYSSLVVM
AMLPIIFGSIRSVKLHKLKKSTGEKADTMTKKDAMYFPLIASAALFGLYL
FFKIFQKVHINYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIL
FTKGEGKHKEDIVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLA
FAINGVEMLHLNNFVTGVILLSGLFFYDIFWVFGTNVMVTVAKSFEAPIK
LVFPQDLIENGLNASNFAMLGLGDIVIPGIFIALLLRFDDSKKRKTRIYF
YSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLLVALIRGELK
VLFAYEDHPEEKPEKKEKKEKDEGVSSSGSKKKESKKGK*

SD07518.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-PA 389 CG11840-PA 1..389 1..389 1983 100 Plus
SppL-PF 417 CG17370-PF 49..414 46..366 335 27.9 Plus
SppL-PC 417 CG17370-PC 49..414 46..366 335 27.9 Plus
SppL-PB 417 CG17370-PB 49..414 46..366 335 27.9 Plus
SppL-PA 417 CG17370-PA 49..414 46..366 335 27.9 Plus