Clone SD07614 Report

Search the DGRC for SD07614

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:76
Well:14
Vector:pOT2
Associated Gene/TranscriptNup44A-RA
Protein status:SD07614.pep: gold
Preliminary Size:2576
Sequenced Size:2433

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8722 2001-01-01 Release 2 assignment
CG8722 2001-07-04 Blastp of sequenced clone
CG8722 2003-01-01 Sim4 clustering to Release 3
Nup44A 2008-04-29 Release 5.5 accounting
Nup44A 2008-08-15 Release 5.9 accounting
Nup44A 2008-12-18 5.12 accounting

Clone Sequence Records

SD07614.complete Sequence

2433 bp (2433 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060480

> SD07614.complete
AATCTTTCCCGGCATCTTATCGCACGGAAATTTTTGTATTTCGGTGTTCG
ATTCTGTTCGAATTATTCATGTTTGGCGCGTGGCCAGAAAAAAACCGTCT
ACTGATATCACAGCCAAATAATAATAGAACCGAAAGTCGGTCGCGTGTGA
AACGCCTGATTTCGATGTGCTTATCTCTAGGATTTCTACAGAGCAACAAA
CAACCGATTTGTGCGTGATAACACACTTGAAATCTTGTAGACACTGTAAA
GTGCACGGTTTACAGTTAAATTGTTTTTTAATTTCTTAGCAAAATACTAC
GAATTTGTAGTGACTGCGTTGGATTGAATTTCCGATTCGAGTCCTTGTGA
TATGCTCATATTTCATAAATATACTTATATCGTATTTATGCAATACAATA
CCAACAAGAAATGCAGTCTCCAATTTAGTTCTTATTAGGTAATTGATGCC
GGCCGACATACACACACGTTGGCAGCTATGCTGCTCTCTCGCCCATACAC
ACACATACACACACACACACACATACGTCACGGGCATCGCGCGATGTGTA
AAATCCAATAGGAATCAAGGTCAGCAGCGAGTGCGCGAGCGAGAGAGGGC
GAGCAAGGCAAGACATATTGAGCATATTGCAGATGGAAGCAATTGGAATT
TATGCTGCCCATTGCACTTTGATTGAAATCCGCACTTTAGCCAGCGAATT
CAAATGCTAAACAAACGCGGGTCCCGATCTACATACGACTATGCTGTGGG
GTTGTTCACCCCACTCATTTGCATACACATATGCGCATACATTTCGCTCG
GATCGTATCGTATAGGATCGGGCCGTAATTACCCGTTTAGTGCTTAGATT
ACCGCACTTACTCTTCTCCATCGCACTGCGCTTCGCACGTTTCTTTCGGT
TGGCAATTTTGTTGTGTGTAACTGTTCTTTTCCGGGTGCAAAACGGCCTC
TTGGCGGCTATTGGAGTCCTGACTCTCCGACTAGTGTGGTTCTCGCGAAT
CCCGGATGGGCGTGTGGCACGGCTGATACGTTATCAGCTTGTGATCGACT
AGAGTACTGTGTTTTGTTATTTTTCGCTCGATTTTTTATTCGTATTTCAC
GCGTAATTCGGACCACTAACTCGGTGTGACCGTTCGCCTGGGCGTACTGA
AAAAATACTGAGCAAGGTAAACAACAGCTGTTCGGCGGCTGTTTGCAAGC
CAACCCTGTCTCTCCTTGTAGGGCTGCATTACCGGCGCAGATTTTTCGGC
GCGTGCATTTTATAAACAACATTTCGGTAAATAAGTTGAGTTTTTATCAT
GTTCGACGTGGAACCCATTATTGCCGACCACAAGGATGTGATACACGACG
TGGTCTTCGACTACTACGGCCGCAGGATGGCAACCTGTTCCAGCGATCAG
ACCGTCAAGATTTGGGACGAGGATGGGCAGGGCAAGTGGAATGTCACGAG
CAGCTGGAAAGCGCACTCCGGCTCCATTTGGCGCGTTTCCTGGGCGCACC
CGGAATTTGGCCAGGTTGTGGCCACATGCTCATTTGATCGCACCGCCTCC
GTTTGGGAGGAGGTGATTGGCGAAAAGGTATCCTCCACCAATACCCCCAC
TCGCCGCTGGGTGCGCCGCACCACCCTTGTAGACTCGCGGACCAGTGTCA
CGGATGTGGAGTTTGCACCCAAGTACCTGGGACTCCTGCTGGCCACCGCC
TCCGCCGACGGCATTATTCGCATCTATGAGGCCCCGGACATTATGAACCT
CTCGCAGTGGCCCGTGCAGCACGAGATTAGCAACAAATTGCCGCTGAGCT
GTTTGTCCTGGAACACTTCCACTTACATGGTCACCCAGCTGCTGGCGGCG
GGCAGCGACGAGGCAGCCACGCCTACTGGCAAGGTCTTCTTATTCGCCTA
CAGCGAGAATTCCCGAAAGTGCGTTAAAATCGATACTGTCAATGATATAA
CCGATCCGGTCACGGATGTGGCCTTTGCTCCAAATGCCGGACGCACCTTT
CACATGCTGGCAGTGGCCAGCAAGGATCTTTATATTGTGAACTTGCGGGG
TGTAACGGACGCCACGGACATCTCCAAGTTGGACATCCAGACCATTAAGT
TTAGCGAGCACAATTGCCCAGTGTGGCGCGTCTGTTGGAATATGCTGGCC
ACGATGCTGATCTCCACGGGCGACGACGGTTGTGTGCGTCTGTGGCGAAT
GAACTACAACCGGCAGTGGCGCTGTGCCGCCGTCTTGAAGGCAGAGGGCA
GCGGACCCACCTACGAGCCTGCTCCGCCCACTCCGACACTGGCCACTACC
GCCTCGGCCACGGCCAAGTTCTACAAAAAGGGCACCATCGGCAACCAGGT
GCCGTGGCACTGATCTTGTTCTTAATTGTAAGAGTTCCGAATAAATTCCT
AAGTTAAACCTCAAAAAAAAAAAAAAAAAAAAA

SD07614.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-RA 2423 Nup44A-RA 497..2401 509..2413 9525 100 Plus
Nup44A.b 1485 Nup44A.b 270..1463 1220..2413 5970 100 Plus
Nup44A.a 1283 Nup44A.a 68..1261 1220..2413 5970 100 Plus
Nup44A-RA 2423 Nup44A-RA 1..511 1..511 2540 99.8 Plus
Nup44A.b 1485 Nup44A.b 1..272 896..1167 1360 100 Plus
Nup44A.a 1283 Nup44A.a 1..70 1098..1167 350 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3876081..3877487 1..1409 6980 99.9 Plus
chr2R 21145070 chr2R 3877547..3877987 1408..1848 2205 100 Plus
chr2R 21145070 chr2R 3878352..3878707 2057..2412 1780 100 Plus
chr2R 21145070 chr2R 3878082..3878292 1847..2057 1055 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:51:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7988667..7990063 1..1409 6830 99.1 Plus
2R 25286936 2R 7990123..7990563 1408..1848 2205 100 Plus
2R 25286936 2R 7990928..7991284 2057..2413 1785 100 Plus
2R 25286936 2R 7990658..7990868 1847..2057 1055 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7990362..7991262 509..1409 4505 100 Plus
2R 25260384 2R 7989866..7990376 1..511 2540 99.8 Plus
2R 25260384 2R 7991322..7991762 1408..1848 2205 100 Plus
2R 25260384 2R 7992127..7992483 2057..2413 1785 100 Plus
2R 25260384 2R 7991857..7992067 1847..2057 1055 100 Plus
Blast to na_te.dros performed 2019-03-16 00:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1539..1612 223..296 127 63.5 Plus
1360 3409 1360 1360 3409bp 2746..2786 1093..1053 124 78 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 125..160 296..261 117 80.6 Minus

SD07614.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:31:24 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3878083..3878291 1848..2056 100 -> Plus
chr2R 3878352..3878707 2057..2412 100   Plus
chr2R 3876081..3877487 1..1409 99 -> Plus
chr2R 3877549..3877986 1410..1847 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:03:25 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..1065 1299..2363 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:57 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..1065 1299..2363 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:37 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 1..1065 1299..2363 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:11 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..1065 1299..2363 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:03:58 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 1..1065 1299..2363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:50 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..2400 1..2412 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:57 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..2400 1..2412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:37 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RC 85..1331 1168..2412 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:11 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..2400 1..2412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:03:58 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RC 85..1331 1168..2412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:24 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7988667..7990063 1..1409 99 -> Plus
2R 7990125..7990562 1410..1847 100 -> Plus
2R 7990659..7990867 1848..2056 100 -> Plus
2R 7990928..7991283 2057..2412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:24 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7988667..7990063 1..1409 99 -> Plus
2R 7990125..7990562 1410..1847 100 -> Plus
2R 7990659..7990867 1848..2056 100 -> Plus
2R 7990928..7991283 2057..2412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:24 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7988667..7990063 1..1409 99 -> Plus
2R 7990125..7990562 1410..1847 100 -> Plus
2R 7990659..7990867 1848..2056 100 -> Plus
2R 7990928..7991283 2057..2412 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:37 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3876172..3877568 1..1409 99 -> Plus
arm_2R 3877630..3878067 1410..1847 100 -> Plus
arm_2R 3878164..3878372 1848..2056 100 -> Plus
arm_2R 3878433..3878788 2057..2412 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:27 Download gff for SD07614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7992127..7992482 2057..2412 100   Plus
2R 7989866..7991262 1..1409 99 -> Plus
2R 7991324..7991761 1410..1847 100 -> Plus
2R 7991858..7992066 1848..2056 100 -> Plus

SD07614.pep Sequence

Translation from 1298 to 2362

> SD07614.pep
MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT
SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP
TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN
LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA
YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR
GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR
MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ
VPWH*

SD07614.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13653-PA 354 GF13653-PA 1..354 1..354 1777 95.5 Plus
Dana\GF16993-PA 363 GF16993-PA 5..296 4..307 339 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23322-PA 354 GG23322-PA 1..354 1..354 1859 97.5 Plus
Dere\GG11201-PA 356 GG11201-PA 5..296 4..307 337 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21895-PA 349 GH21895-PA 1..349 1..354 1686 91 Plus
Dgri\GH19595-PA 353 GH19595-PA 5..296 4..307 335 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-PA 354 CG8722-PA 1..354 1..354 1901 100 Plus
Nup44A-PC 354 CG8722-PC 1..354 1..354 1901 100 Plus
Nup44A-PB 354 CG8722-PB 1..354 1..354 1901 100 Plus
Sec13-PB 356 CG6773-PB 5..296 4..307 357 27.7 Plus
Sec13-PA 356 CG6773-PA 5..296 4..307 357 27.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20394-PA 356 GI20394-PA 1..356 1..354 1688 89.9 Plus
Dmoj\moj137-PA 354 GI23988-PA 5..296 4..307 339 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11480-PA 354 GL11480-PA 1..354 1..354 1746 93.8 Plus
Dper\GL13786-PA 358 GL13786-PA 5..296 4..307 341 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21281-PA 354 GA21281-PA 1..354 1..354 1742 93.5 Plus
Dpse\GA19854-PA 356 GA19854-PA 5..296 4..307 341 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20999-PA 354 GM20999-PA 1..354 1..354 1888 99.2 Plus
Dsec\GM26501-PA 356 GM26501-PA 5..296 4..307 342 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10530-PA 354 GD10530-PA 1..354 1..354 1886 99.2 Plus
Dsim\GD21013-PA 356 GD21013-PA 5..296 4..307 342 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22120-PA 354 GJ22120-PA 1..354 1..354 1708 91.8 Plus
Dvir\GJ23624-PA 352 GJ23624-PA 5..296 4..307 324 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21742-PA 356 GK21742-PA 1..356 1..354 1780 92.1 Plus
Dwil\GK22486-PA 368 GK22486-PA 5..296 4..307 348 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19167-PA 354 GE19167-PA 1..354 1..354 1877 98 Plus
Dyak\GE10367-PA 357 GE10367-PA 5..296 4..307 341 27.7 Plus

SD07614.hyp Sequence

Translation from 1298 to 2362

> SD07614.hyp
MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT
SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP
TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN
LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA
YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR
GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR
MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ
VPWH*

SD07614.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-PA 354 CG8722-PA 1..354 1..354 1901 100 Plus
Nup44A-PC 354 CG8722-PC 1..354 1..354 1901 100 Plus
Nup44A-PB 354 CG8722-PB 1..354 1..354 1901 100 Plus
Sec13-PB 356 CG6773-PB 5..296 4..307 357 27.7 Plus
Sec13-PA 356 CG6773-PA 5..296 4..307 357 27.7 Plus