BDGP Sequence Production Resources |
Search the DGRC for SD07614
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 76 |
Well: | 14 |
Vector: | pOT2 |
Associated Gene/Transcript | Nup44A-RA |
Protein status: | SD07614.pep: gold |
Preliminary Size: | 2576 |
Sequenced Size: | 2433 |
Gene | Date | Evidence |
---|---|---|
CG8722 | 2001-01-01 | Release 2 assignment |
CG8722 | 2001-07-04 | Blastp of sequenced clone |
CG8722 | 2003-01-01 | Sim4 clustering to Release 3 |
Nup44A | 2008-04-29 | Release 5.5 accounting |
Nup44A | 2008-08-15 | Release 5.9 accounting |
Nup44A | 2008-12-18 | 5.12 accounting |
2433 bp (2433 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060480
> SD07614.complete AATCTTTCCCGGCATCTTATCGCACGGAAATTTTTGTATTTCGGTGTTCG ATTCTGTTCGAATTATTCATGTTTGGCGCGTGGCCAGAAAAAAACCGTCT ACTGATATCACAGCCAAATAATAATAGAACCGAAAGTCGGTCGCGTGTGA AACGCCTGATTTCGATGTGCTTATCTCTAGGATTTCTACAGAGCAACAAA CAACCGATTTGTGCGTGATAACACACTTGAAATCTTGTAGACACTGTAAA GTGCACGGTTTACAGTTAAATTGTTTTTTAATTTCTTAGCAAAATACTAC GAATTTGTAGTGACTGCGTTGGATTGAATTTCCGATTCGAGTCCTTGTGA TATGCTCATATTTCATAAATATACTTATATCGTATTTATGCAATACAATA CCAACAAGAAATGCAGTCTCCAATTTAGTTCTTATTAGGTAATTGATGCC GGCCGACATACACACACGTTGGCAGCTATGCTGCTCTCTCGCCCATACAC ACACATACACACACACACACACATACGTCACGGGCATCGCGCGATGTGTA AAATCCAATAGGAATCAAGGTCAGCAGCGAGTGCGCGAGCGAGAGAGGGC GAGCAAGGCAAGACATATTGAGCATATTGCAGATGGAAGCAATTGGAATT TATGCTGCCCATTGCACTTTGATTGAAATCCGCACTTTAGCCAGCGAATT CAAATGCTAAACAAACGCGGGTCCCGATCTACATACGACTATGCTGTGGG GTTGTTCACCCCACTCATTTGCATACACATATGCGCATACATTTCGCTCG GATCGTATCGTATAGGATCGGGCCGTAATTACCCGTTTAGTGCTTAGATT ACCGCACTTACTCTTCTCCATCGCACTGCGCTTCGCACGTTTCTTTCGGT TGGCAATTTTGTTGTGTGTAACTGTTCTTTTCCGGGTGCAAAACGGCCTC TTGGCGGCTATTGGAGTCCTGACTCTCCGACTAGTGTGGTTCTCGCGAAT CCCGGATGGGCGTGTGGCACGGCTGATACGTTATCAGCTTGTGATCGACT AGAGTACTGTGTTTTGTTATTTTTCGCTCGATTTTTTATTCGTATTTCAC GCGTAATTCGGACCACTAACTCGGTGTGACCGTTCGCCTGGGCGTACTGA AAAAATACTGAGCAAGGTAAACAACAGCTGTTCGGCGGCTGTTTGCAAGC CAACCCTGTCTCTCCTTGTAGGGCTGCATTACCGGCGCAGATTTTTCGGC GCGTGCATTTTATAAACAACATTTCGGTAAATAAGTTGAGTTTTTATCAT GTTCGACGTGGAACCCATTATTGCCGACCACAAGGATGTGATACACGACG TGGTCTTCGACTACTACGGCCGCAGGATGGCAACCTGTTCCAGCGATCAG ACCGTCAAGATTTGGGACGAGGATGGGCAGGGCAAGTGGAATGTCACGAG CAGCTGGAAAGCGCACTCCGGCTCCATTTGGCGCGTTTCCTGGGCGCACC CGGAATTTGGCCAGGTTGTGGCCACATGCTCATTTGATCGCACCGCCTCC GTTTGGGAGGAGGTGATTGGCGAAAAGGTATCCTCCACCAATACCCCCAC TCGCCGCTGGGTGCGCCGCACCACCCTTGTAGACTCGCGGACCAGTGTCA CGGATGTGGAGTTTGCACCCAAGTACCTGGGACTCCTGCTGGCCACCGCC TCCGCCGACGGCATTATTCGCATCTATGAGGCCCCGGACATTATGAACCT CTCGCAGTGGCCCGTGCAGCACGAGATTAGCAACAAATTGCCGCTGAGCT GTTTGTCCTGGAACACTTCCACTTACATGGTCACCCAGCTGCTGGCGGCG GGCAGCGACGAGGCAGCCACGCCTACTGGCAAGGTCTTCTTATTCGCCTA CAGCGAGAATTCCCGAAAGTGCGTTAAAATCGATACTGTCAATGATATAA CCGATCCGGTCACGGATGTGGCCTTTGCTCCAAATGCCGGACGCACCTTT CACATGCTGGCAGTGGCCAGCAAGGATCTTTATATTGTGAACTTGCGGGG TGTAACGGACGCCACGGACATCTCCAAGTTGGACATCCAGACCATTAAGT TTAGCGAGCACAATTGCCCAGTGTGGCGCGTCTGTTGGAATATGCTGGCC ACGATGCTGATCTCCACGGGCGACGACGGTTGTGTGCGTCTGTGGCGAAT GAACTACAACCGGCAGTGGCGCTGTGCCGCCGTCTTGAAGGCAGAGGGCA GCGGACCCACCTACGAGCCTGCTCCGCCCACTCCGACACTGGCCACTACC GCCTCGGCCACGGCCAAGTTCTACAAAAAGGGCACCATCGGCAACCAGGT GCCGTGGCACTGATCTTGTTCTTAATTGTAAGAGTTCCGAATAAATTCCT AAGTTAAACCTCAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup44A-RA | 2423 | Nup44A-RA | 497..2401 | 509..2413 | 9525 | 100 | Plus |
Nup44A.b | 1485 | Nup44A.b | 270..1463 | 1220..2413 | 5970 | 100 | Plus |
Nup44A.a | 1283 | Nup44A.a | 68..1261 | 1220..2413 | 5970 | 100 | Plus |
Nup44A-RA | 2423 | Nup44A-RA | 1..511 | 1..511 | 2540 | 99.8 | Plus |
Nup44A.b | 1485 | Nup44A.b | 1..272 | 896..1167 | 1360 | 100 | Plus |
Nup44A.a | 1283 | Nup44A.a | 1..70 | 1098..1167 | 350 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3876081..3877487 | 1..1409 | 6980 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 3877547..3877987 | 1408..1848 | 2205 | 100 | Plus |
chr2R | 21145070 | chr2R | 3878352..3878707 | 2057..2412 | 1780 | 100 | Plus |
chr2R | 21145070 | chr2R | 3878082..3878292 | 1847..2057 | 1055 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7988667..7990063 | 1..1409 | 6830 | 99.1 | Plus |
2R | 25286936 | 2R | 7990123..7990563 | 1408..1848 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 7990928..7991284 | 2057..2413 | 1785 | 100 | Plus |
2R | 25286936 | 2R | 7990658..7990868 | 1847..2057 | 1055 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7990362..7991262 | 509..1409 | 4505 | 100 | Plus |
2R | 25260384 | 2R | 7989866..7990376 | 1..511 | 2540 | 99.8 | Plus |
2R | 25260384 | 2R | 7991322..7991762 | 1408..1848 | 2205 | 100 | Plus |
2R | 25260384 | 2R | 7992127..7992483 | 2057..2413 | 1785 | 100 | Plus |
2R | 25260384 | 2R | 7991857..7992067 | 1847..2057 | 1055 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1539..1612 | 223..296 | 127 | 63.5 | Plus |
1360 | 3409 | 1360 1360 3409bp | 2746..2786 | 1093..1053 | 124 | 78 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 125..160 | 296..261 | 117 | 80.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3878083..3878291 | 1848..2056 | 100 | -> | Plus |
chr2R | 3878352..3878707 | 2057..2412 | 100 | Plus | |
chr2R | 3876081..3877487 | 1..1409 | 99 | -> | Plus |
chr2R | 3877549..3877986 | 1410..1847 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..1065 | 1299..2363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..1065 | 1299..2363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RB | 1..1065 | 1299..2363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..1065 | 1299..2363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RB | 1..1065 | 1299..2363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..2400 | 1..2412 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..2400 | 1..2412 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RC | 85..1331 | 1168..2412 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RA | 1..2400 | 1..2412 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup44A-RC | 85..1331 | 1168..2412 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7988667..7990063 | 1..1409 | 99 | -> | Plus |
2R | 7990125..7990562 | 1410..1847 | 100 | -> | Plus |
2R | 7990659..7990867 | 1848..2056 | 100 | -> | Plus |
2R | 7990928..7991283 | 2057..2412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7988667..7990063 | 1..1409 | 99 | -> | Plus |
2R | 7990125..7990562 | 1410..1847 | 100 | -> | Plus |
2R | 7990659..7990867 | 1848..2056 | 100 | -> | Plus |
2R | 7990928..7991283 | 2057..2412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7988667..7990063 | 1..1409 | 99 | -> | Plus |
2R | 7990125..7990562 | 1410..1847 | 100 | -> | Plus |
2R | 7990659..7990867 | 1848..2056 | 100 | -> | Plus |
2R | 7990928..7991283 | 2057..2412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3876172..3877568 | 1..1409 | 99 | -> | Plus |
arm_2R | 3877630..3878067 | 1410..1847 | 100 | -> | Plus |
arm_2R | 3878164..3878372 | 1848..2056 | 100 | -> | Plus |
arm_2R | 3878433..3878788 | 2057..2412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7992127..7992482 | 2057..2412 | 100 | Plus | |
2R | 7989866..7991262 | 1..1409 | 99 | -> | Plus |
2R | 7991324..7991761 | 1410..1847 | 100 | -> | Plus |
2R | 7991858..7992066 | 1848..2056 | 100 | -> | Plus |
Translation from 1298 to 2362
> SD07614.pep MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ VPWH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13653-PA | 354 | GF13653-PA | 1..354 | 1..354 | 1777 | 95.5 | Plus |
Dana\GF16993-PA | 363 | GF16993-PA | 5..296 | 4..307 | 339 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23322-PA | 354 | GG23322-PA | 1..354 | 1..354 | 1859 | 97.5 | Plus |
Dere\GG11201-PA | 356 | GG11201-PA | 5..296 | 4..307 | 337 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21895-PA | 349 | GH21895-PA | 1..349 | 1..354 | 1686 | 91 | Plus |
Dgri\GH19595-PA | 353 | GH19595-PA | 5..296 | 4..307 | 335 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup44A-PA | 354 | CG8722-PA | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PC | 354 | CG8722-PC | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PB | 354 | CG8722-PB | 1..354 | 1..354 | 1901 | 100 | Plus |
Sec13-PB | 356 | CG6773-PB | 5..296 | 4..307 | 357 | 27.7 | Plus |
Sec13-PA | 356 | CG6773-PA | 5..296 | 4..307 | 357 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20394-PA | 356 | GI20394-PA | 1..356 | 1..354 | 1688 | 89.9 | Plus |
Dmoj\moj137-PA | 354 | GI23988-PA | 5..296 | 4..307 | 339 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11480-PA | 354 | GL11480-PA | 1..354 | 1..354 | 1746 | 93.8 | Plus |
Dper\GL13786-PA | 358 | GL13786-PA | 5..296 | 4..307 | 341 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21281-PA | 354 | GA21281-PA | 1..354 | 1..354 | 1742 | 93.5 | Plus |
Dpse\GA19854-PA | 356 | GA19854-PA | 5..296 | 4..307 | 341 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20999-PA | 354 | GM20999-PA | 1..354 | 1..354 | 1888 | 99.2 | Plus |
Dsec\GM26501-PA | 356 | GM26501-PA | 5..296 | 4..307 | 342 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10530-PA | 354 | GD10530-PA | 1..354 | 1..354 | 1886 | 99.2 | Plus |
Dsim\GD21013-PA | 356 | GD21013-PA | 5..296 | 4..307 | 342 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22120-PA | 354 | GJ22120-PA | 1..354 | 1..354 | 1708 | 91.8 | Plus |
Dvir\GJ23624-PA | 352 | GJ23624-PA | 5..296 | 4..307 | 324 | 27.1 | Plus |
Translation from 1298 to 2362
> SD07614.hyp MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ VPWH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup44A-PA | 354 | CG8722-PA | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PC | 354 | CG8722-PC | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PB | 354 | CG8722-PB | 1..354 | 1..354 | 1901 | 100 | Plus |
Sec13-PB | 356 | CG6773-PB | 5..296 | 4..307 | 357 | 27.7 | Plus |
Sec13-PA | 356 | CG6773-PA | 5..296 | 4..307 | 357 | 27.7 | Plus |