Clone SD07714 Report

Search the DGRC for SD07714

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:77
Well:14
Vector:pOT2
Associated Gene/Transcriptcpb-RA
Protein status:SD07714.pep: gold
Preliminary Size:1659
Sequenced Size:1620

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17158 2001-01-01 Release 2 assignment
CG17158 2001-11-29 Blastp of sequenced clone
CG31665 2003-01-01 Sim4 clustering to Release 3
cpb 2008-04-29 Release 5.5 accounting
cpb 2008-08-15 Release 5.9 accounting
cpb 2008-12-18 5.12 accounting

Clone Sequence Records

SD07714.complete Sequence

1620 bp (1620 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069829

> SD07714.complete
TCCAGCTCTAGCACACCATAGCAAAAATAAAAATCCTAATAATAAGGAAA
AAGAGTCAATTTAGTGCAATCACTTGCAATATAAGCCCGAAATCCTAGCT
AGAGTTTAAGATCGGCCCTGCTCAGCGAACGCAGGCCCCTAACATAAACA
GTGTAAAACTATCGAAACAAGGGAAAGCAGAAAGTACCAAAATGTCGGAA
ATGCAGATGGACTGTGCTTTGGATCTGATGCGGAGGCTGCCGCCCCAGCA
GATCGAGAAGAACCTTATTGATCTGATAGACTTGGCACCGGATCTCTGCG
AGGACTTGCTCTCCTCCGTGGACCAGCCGCTGAAGATCGCCAAGGACAAG
GAGCACGGCAAGGACTATCTGCTGTGCGACTATAACCGGGATGGGGACTC
CTACAGATCGCCCTGGTCGAACTCCTACTATCCGCCGCTGGAGGATGGCC
AAATGCCCTCGGAACGACTGCGCAAACTGGAAATCGAGGCGAACTATGCC
TTCGATCAGTACAGGGAGATGTACTACGAGGGAGGCGTCTCCTCCGTCTA
CCTATGGGATCTGGATCACGGGTTTGCCGCCGTTATACTGATCAAAAAGG
CGGGAGATGGCAGCAAGATGATCCGCGGCTGCTGGGACTCCATCCATGTG
GTCGAGGTACAGGAGAAGACCACCGGCAGGACGGCCCACTACAAGCTCAC
CTCCACGGCAATGCTCTGGCTGCAGACCAACAAACAGGGTTCGGGAACCA
TGAATCTGGGCGGATCCCTCACCCGGCAGCAGGAGCAGGACGCCAACGTC
AGCGAGTCGTCGCCGCACATCGCCAACATTGGCAAGATGGTCGAGGAGAT
GGAGAACAAGATCAGGAACACCCTGAACGAGATCTACTTTGGCAAGACCA
AGGACATCGTGAACGGACTAAGGAGCACACAATCACTGGCCGATCAGCGC
CAGCAGGCGGCCATGAAGCAGGACCTCGCAGCGGCCATCCTGCGACGCAA
TGTCAAGCCCGAATCGAACTGAGTACTGAGCGGCTGAAGGCTGAATTTCC
ACATAAACCAATCCAGTCCAGGGGCGTCCCACAAGTAGGCTGCTCCCAAG
AAGAGCGCAGGAATATGCGAATTGCAAGGCACTGTCGTCGCCACTAAATA
TTGTCATAAATAGAAATAATTTTCATAATATTTCGGCTGCACCCACCCAA
TTCGCTGTTACTCGCCCAATTGTGTTGAGCAGCTCCGTGGAGGACTCCGC
TTGGACTGGACTAAAGAGCAGACTAAAAAATATTAAATACGCATTTCTAG
GCAGTAAATTTGTTACATGAGAAAATTGTTACACCACGAGAAGCACATTA
ATGTAAATTTTGCCCGCCCGTTTCAACTGTCCTCCCACATTGTTGCCGTT
TGGAGTCGCGCTTCATCCAGAGTTCAGCCGAAAATGCCAACTTCGCCGCC
CTCAAGACAGTATCCATAAGTATTTGTATCTTATTTGTAATATTGCATAT
TTGCACCGAAGTCGAGGCACTTGCGTTTCGTTCTTAATCCTTCCGCGAAT
AAATATTGTGTTTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

SD07714.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
cpb-RA 1854 cpb-RA 48..1622 1..1574 7685 99.3 Plus
cpb.a 1738 cpb.a 124..1506 192..1574 6765 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1705257..1706635 194..1572 6775 99.4 Plus
chr2L 23010047 chr2L 1704778..1704972 1..194 910 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:51:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1705399..1706779 194..1574 6755 99.3 Plus
2L 23513712 2L 1704920..1705114 1..194 925 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1705399..1706779 194..1574 6755 99.2 Plus
2L 23513712 2L 1704920..1705114 1..194 935 99.4 Plus
Blast to na_te.dros performed on 2019-03-16 08:02:47 has no hits.

SD07714.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:03:51 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1704778..1704972 1..194 98 -> Plus
chr2L 1705258..1706635 195..1572 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:03:36 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 1..831 192..1022 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:41 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 1..831 192..1022 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:50:25 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 1..831 192..1022 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:43 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 1..831 192..1022 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:33:50 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 1..831 192..1022 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:17 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 17..1589 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:41 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 17..1589 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:25 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 19..1591 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:43 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 17..1589 1..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:33:50 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
cpb-RA 19..1591 1..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:51 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1704920..1705114 1..194 99 -> Plus
2L 1705400..1706777 195..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:51 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1704920..1705114 1..194 99 -> Plus
2L 1705400..1706777 195..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:51 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1704920..1705114 1..194 99 -> Plus
2L 1705400..1706777 195..1572 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:25 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1704920..1705114 1..194 99 -> Plus
arm_2L 1705400..1706777 195..1572 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:54 Download gff for SD07714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1705400..1706777 195..1572 99   Plus
2L 1704920..1705114 1..194 99 -> Plus

SD07714.pep Sequence

Translation from 191 to 1021

> SD07714.pep
MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIA
KDKEHGKDYLLCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEA
NYAFDQYREMYYEGGVSSVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDS
IHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQD
ANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQSLA
DQRQQAAMKQDLAAAILRRNVKPESN*

SD07714.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20820-PA 276 GF20820-PA 1..276 1..276 1463 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24802-PA 276 GG24802-PA 1..276 1..276 1485 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11421-PA 276 GH11421-PA 1..276 1..276 1440 96.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
cpb-PB 276 CG17158-PB 1..276 1..276 1442 100 Plus
cpb-PA 276 CG17158-PA 1..276 1..276 1442 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14594-PA 274 GI14594-PA 1..274 1..274 1453 98.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18775-PA 276 GL18775-PA 1..276 1..276 1474 98.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14356-PA 276 GA14356-PA 1..276 1..276 1474 98.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16827-PA 276 GM16827-PA 1..276 1..276 1485 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23110-PA 40 GD23110-PA 2..40 238..276 194 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17098-PA 276 GJ17098-PA 1..276 1..276 1461 98.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15203-PA 273 GK15203-PA 1..273 4..276 1461 98.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17670-PA 276 GE17670-PA 1..276 1..276 1485 100 Plus

SD07714.hyp Sequence

Translation from 191 to 1021

> SD07714.hyp
MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIA
KDKEHGKDYLLCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEA
NYAFDQYREMYYEGGVSSVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDS
IHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQD
ANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQSLA
DQRQQAAMKQDLAAAILRRNVKPESN*

SD07714.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
cpb-PB 276 CG17158-PB 1..276 1..276 1442 100 Plus
cpb-PA 276 CG17158-PA 1..276 1..276 1442 100 Plus