Clone SD08021 Report

Search the DGRC for SD08021

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:80
Well:21
Vector:pOT2
Associated Gene/Transcriptalien-RA
Protein status:SD08021.pep: gold
Preliminary Size:1641
Sequenced Size:1486

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9556 2001-11-09 Blastp of sequenced clone
CG9556 2003-01-01 Sim4 clustering to Release 3
alien 2008-04-29 Release 5.5 accounting
alien 2008-08-15 Release 5.9 accounting
alien 2008-12-18 5.12 accounting

Clone Sequence Records

SD08021.complete Sequence

1486 bp (1486 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069836

> SD08021.complete
TTTTTCTAGTAAAAATATTCTAGATTGGCAATAATTTGCTCATAAAGCGT
ACAAAGCCAAACTCGTAAAATGTCCGACAACGATGATGATTTTATGTGCG
ACGATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAA
CCGGATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGA
GGAGGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGG
AAAATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATC
AAGATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAA
GCAGCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAA
AGAGCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCA
CTGCTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAA
AAACGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACT
TCGACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCAT
CAAAGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCA
GCTCCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGA
ACAACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCG
GCCATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAA
AATGCATCTACGAGAAGGCGAGTTCGAAAAGGCACACACGGACTTCTTTG
AGGCGTTCAAGAACTACGATGAGAGCGGTTCACCGCGCAGAACCACTTGC
CTAAAGTACTTGGTGTTGGCCAACATGCTGATGAAATCGGGCATAAATCC
CTTTGACTCACAGGAAGCCAAACCGTATAAAAATGATCCGGAAATCCTTG
CTATGACAAACCTGGTCAATTCCTATCAAAACAACGACATCAATGAGTTT
GAAACCATCTTAAGGCAACATCGCAGCAATATCATGGCCGATCAGTTTAT
ACGTGAACACATCGAAGATTTGCTGCGTAACATTCGCACCCAGGTGCTTA
TAAAACTTATCAGGCCCTATAAGAACATCGCTATACCCTTCATAGCCAAT
GCACTGAACATAGAGCCAGCCGAGGTGGAAAGCCTGCTGGTTTCCTGCAT
TCTAGATGACACAATCAAGGGACGCATCGACCAGGTGAATCAGGTGCTGC
AGCTGGACAAGATCAACAGCAGTGCCTCGCGGTACAATGCCCTTGAAAAA
TGGTCCAACCAAATCCAATCACTGCAGTTCGCTGTGGTCCAGAAAATGGC
CTAAGTACAGCTACATATTTCCAATTCGATGAAAATTATTAAATTTGCTA
GAATTTATCTTAAAAAAAAAAAAAAAAAAAAAAAAA

SD08021.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
alien-RA 1649 alien-RA 170..1584 50..1464 6820 98.7 Plus
alien-RB 2412 alien-RB 170..1524 50..1404 6520 98.7 Plus
alien-RA 1649 alien-RA 116..166 1..51 240 98 Plus
alien-RB 2412 alien-RB 116..166 1..51 240 98 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8995105..8995587 927..445 2340 99 Minus
chr2L 23010047 chr2L 8994712..8995044 1259..927 1620 99.1 Minus
chr2L 23010047 chr2L 8994453..8994654 1461..1260 965 98.5 Minus
chr2L 23010047 chr2L 8995839..8996034 318..123 935 98.5 Minus
chr2L 23010047 chr2L 8995651..8995777 444..318 620 99.2 Minus
chr2L 23010047 chr2L 8996118..8996246 124..1 520 95.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:51:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8996197..8996679 927..445 2340 99 Minus
2L 23513712 2L 8995804..8996136 1259..927 1620 99.1 Minus
2L 23513712 2L 8995542..8995746 1464..1260 980 98.5 Minus
2L 23513712 2L 8996931..8997126 318..123 935 98.5 Minus
2L 23513712 2L 8996743..8996869 444..318 605 98.4 Minus
2L 23513712 2L 8997209..8997337 124..1 505 94.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8996197..8996679 927..445 2340 98.9 Minus
2L 23513712 2L 8995804..8996136 1259..927 1620 99 Minus
2L 23513712 2L 8995542..8995746 1464..1260 980 98.5 Minus
2L 23513712 2L 8996931..8997126 318..123 935 98.4 Minus
2L 23513712 2L 8996743..8996869 444..318 605 98.4 Minus
2L 23513712 2L 8997209..8997283 124..50 360 98.6 Minus
2L 23513712 2L 8997287..8997337 51..1 240 98 Minus
Blast to na_te.dros performed on 2019-03-16 05:35:17 has no hits.

SD08021.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:35:56 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8995651..8995776 319..444 99 <- Minus
chr2L 8994453..8994654 1260..1461 98 <- Minus
chr2L 8994712..8995044 927..1259 99 <- Minus
chr2L 8995839..8996033 124..318 98 <- Minus
chr2L 8996119..8996246 1..123 95   Minus
chr2L 8995106..8995587 445..926 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:04:02 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 1..1335 70..1404 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:43 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 1..1335 70..1404 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:11:45 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 1..1335 70..1404 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:59:24 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 1..1335 70..1404 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:18 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 1..1335 70..1404 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:10:11 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RA 39..1504 1..1461 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:43 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RA 39..1504 1..1461 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:45 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RA 43..1508 1..1461 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:59:24 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RA 39..1504 1..1461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:18 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RA 43..1508 1..1461 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:35:56 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8997210..8997337 1..123 94   Minus
2L 8995545..8995746 1260..1461 98 <- Minus
2L 8995804..8996136 927..1259 99 <- Minus
2L 8996198..8996679 445..926 98 <- Minus
2L 8996743..8996868 319..444 98 <- Minus
2L 8996931..8997125 124..318 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:35:56 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8997210..8997337 1..123 94   Minus
2L 8995545..8995746 1260..1461 98 <- Minus
2L 8995804..8996136 927..1259 99 <- Minus
2L 8996198..8996679 445..926 98 <- Minus
2L 8996743..8996868 319..444 98 <- Minus
2L 8996931..8997125 124..318 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:35:56 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8997210..8997337 1..123 94   Minus
2L 8995545..8995746 1260..1461 98 <- Minus
2L 8995804..8996136 927..1259 99 <- Minus
2L 8996198..8996679 445..926 98 <- Minus
2L 8996743..8996868 319..444 98 <- Minus
2L 8996931..8997125 124..318 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:45 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8995545..8995746 1260..1461 98 <- Minus
arm_2L 8995804..8996136 927..1259 99 <- Minus
arm_2L 8996198..8996679 445..926 98 <- Minus
arm_2L 8996743..8996868 319..444 98 <- Minus
arm_2L 8996931..8997125 124..318 98 <- Minus
arm_2L 8997210..8997337 1..123 94   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:52 Download gff for SD08021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8995804..8996136 927..1259 99 <- Minus
2L 8996198..8996679 445..926 98 <- Minus
2L 8996743..8996868 319..444 98 <- Minus
2L 8996931..8997125 124..318 98 <- Minus
2L 8997210..8997337 1..123 94   Minus
2L 8995545..8995746 1260..1461 98 <- Minus

SD08021.hyp Sequence

Translation from 69 to 1403

> SD08021.hyp
MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA
LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI
KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF
KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA
LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG
EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA
KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED
LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK
GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*

SD08021.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
alien-PD 444 CG9556-PD 1..444 1..444 2293 100 Plus
alien-PE 444 CG9556-PE 1..444 1..444 2293 100 Plus
alien-PB 444 CG9556-PB 1..444 1..444 2293 100 Plus
alien-PA 444 CG9556-PA 1..444 1..444 2293 100 Plus
Rpn6-PC 422 CG10149-PC 15..385 41..410 233 22.3 Plus

SD08021.pep Sequence

Translation from 69 to 1403

> SD08021.pep
MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA
LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI
KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF
KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA
LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG
EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA
KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED
LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK
GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*

SD08021.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22104-PA 444 GF22104-PA 1..444 1..444 2360 99.5 Plus
Dana\GF13517-PA 422 GF13517-PA 78..385 102..410 209 22 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24040-PA 444 GG24040-PA 1..444 1..444 2375 100 Plus
Dere\GG22404-PA 439 GG22404-PA 95..402 102..410 211 22 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25117-PA 444 GH25117-PA 1..444 1..444 2341 98.6 Plus
Dgri\GH22257-PA 444 GH22257-PA 1..444 1..444 2341 98.6 Plus
Dgri\GH12954-PA 106 GH12954-PA 1..106 339..444 523 96.2 Plus
Dgri\GH21149-PA 421 GH21149-PA 77..384 102..410 196 22 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
alien-PD 444 CG9556-PD 1..444 1..444 2293 100 Plus
alien-PE 444 CG9556-PE 1..444 1..444 2293 100 Plus
alien-PB 444 CG9556-PB 1..444 1..444 2293 100 Plus
alien-PA 444 CG9556-PA 1..444 1..444 2293 100 Plus
Rpn6-PC 422 CG10149-PC 15..385 41..410 233 22.3 Plus
Rpn6-PB 422 CG10149-PB 15..385 41..410 233 22.3 Plus
Rpn6-PA 439 CG10149-PA 32..402 41..410 233 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11968-PA 444 GI11968-PA 1..444 1..444 2322 97.7 Plus
Dmoj\GI18748-PA 421 GI18748-PA 77..384 102..410 202 22 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25543-PA 386 GL25543-PA 1..386 1..444 1778 79.8 Plus
Dper\GL10628-PA 421 GL10628-PA 77..384 102..410 222 22.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21877-PA 444 GA21877-PA 1..444 1..444 2353 98.9 Plus
Dpse\GA24424-PA 421 GA24424-PA 77..384 102..410 222 22.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12583-PA 444 GM12583-PA 1..444 1..444 2375 100 Plus
Dsec\GM20190-PA 439 GM20190-PA 95..402 102..410 211 22.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22368-PA 444 GD22368-PA 1..444 1..444 2375 100 Plus
Dsim\GD25662-PA 328 GD25662-PA 18..291 138..410 209 24.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14108-PA 444 GJ14108-PA 1..444 1..444 2324 98.2 Plus
Dvir\GJ21772-PA 421 GJ21772-PA 77..384 102..410 201 22 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23707-PA 444 GK23707-PA 1..444 1..444 2360 99.1 Plus
Dwil\GK19517-PA 425 GK19517-PA 81..388 102..410 203 21.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10643-PA 444 GE10643-PA 1..444 1..444 2375 100 Plus
Dyak\GE12293-PA 439 GE12293-PA 95..402 102..410 210 22 Plus