BDGP Sequence Production Resources |
Search the DGRC for SD08021
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 80 |
Well: | 21 |
Vector: | pOT2 |
Associated Gene/Transcript | alien-RA |
Protein status: | SD08021.pep: gold |
Preliminary Size: | 1641 |
Sequenced Size: | 1486 |
Gene | Date | Evidence |
---|---|---|
CG9556 | 2001-11-09 | Blastp of sequenced clone |
CG9556 | 2003-01-01 | Sim4 clustering to Release 3 |
alien | 2008-04-29 | Release 5.5 accounting |
alien | 2008-08-15 | Release 5.9 accounting |
alien | 2008-12-18 | 5.12 accounting |
1486 bp (1486 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069836
> SD08021.complete TTTTTCTAGTAAAAATATTCTAGATTGGCAATAATTTGCTCATAAAGCGT ACAAAGCCAAACTCGTAAAATGTCCGACAACGATGATGATTTTATGTGCG ACGATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAA CCGGATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGA GGAGGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGG AAAATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATC AAGATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAA GCAGCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAA AGAGCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCA CTGCTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAA AAACGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACT TCGACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCAT CAAAGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCA GCTCCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGA ACAACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCG GCCATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAA AATGCATCTACGAGAAGGCGAGTTCGAAAAGGCACACACGGACTTCTTTG AGGCGTTCAAGAACTACGATGAGAGCGGTTCACCGCGCAGAACCACTTGC CTAAAGTACTTGGTGTTGGCCAACATGCTGATGAAATCGGGCATAAATCC CTTTGACTCACAGGAAGCCAAACCGTATAAAAATGATCCGGAAATCCTTG CTATGACAAACCTGGTCAATTCCTATCAAAACAACGACATCAATGAGTTT GAAACCATCTTAAGGCAACATCGCAGCAATATCATGGCCGATCAGTTTAT ACGTGAACACATCGAAGATTTGCTGCGTAACATTCGCACCCAGGTGCTTA TAAAACTTATCAGGCCCTATAAGAACATCGCTATACCCTTCATAGCCAAT GCACTGAACATAGAGCCAGCCGAGGTGGAAAGCCTGCTGGTTTCCTGCAT TCTAGATGACACAATCAAGGGACGCATCGACCAGGTGAATCAGGTGCTGC AGCTGGACAAGATCAACAGCAGTGCCTCGCGGTACAATGCCCTTGAAAAA TGGTCCAACCAAATCCAATCACTGCAGTTCGCTGTGGTCCAGAAAATGGC CTAAGTACAGCTACATATTTCCAATTCGATGAAAATTATTAAATTTGCTA GAATTTATCTTAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alien-RA | 1649 | alien-RA | 170..1584 | 50..1464 | 6820 | 98.7 | Plus |
alien-RB | 2412 | alien-RB | 170..1524 | 50..1404 | 6520 | 98.7 | Plus |
alien-RA | 1649 | alien-RA | 116..166 | 1..51 | 240 | 98 | Plus |
alien-RB | 2412 | alien-RB | 116..166 | 1..51 | 240 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8995105..8995587 | 927..445 | 2340 | 99 | Minus |
chr2L | 23010047 | chr2L | 8994712..8995044 | 1259..927 | 1620 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 8994453..8994654 | 1461..1260 | 965 | 98.5 | Minus |
chr2L | 23010047 | chr2L | 8995839..8996034 | 318..123 | 935 | 98.5 | Minus |
chr2L | 23010047 | chr2L | 8995651..8995777 | 444..318 | 620 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 8996118..8996246 | 124..1 | 520 | 95.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8996197..8996679 | 927..445 | 2340 | 99 | Minus |
2L | 23513712 | 2L | 8995804..8996136 | 1259..927 | 1620 | 99.1 | Minus |
2L | 23513712 | 2L | 8995542..8995746 | 1464..1260 | 980 | 98.5 | Minus |
2L | 23513712 | 2L | 8996931..8997126 | 318..123 | 935 | 98.5 | Minus |
2L | 23513712 | 2L | 8996743..8996869 | 444..318 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 8997209..8997337 | 124..1 | 505 | 94.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8996197..8996679 | 927..445 | 2340 | 98.9 | Minus |
2L | 23513712 | 2L | 8995804..8996136 | 1259..927 | 1620 | 99 | Minus |
2L | 23513712 | 2L | 8995542..8995746 | 1464..1260 | 980 | 98.5 | Minus |
2L | 23513712 | 2L | 8996931..8997126 | 318..123 | 935 | 98.4 | Minus |
2L | 23513712 | 2L | 8996743..8996869 | 444..318 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 8997209..8997283 | 124..50 | 360 | 98.6 | Minus |
2L | 23513712 | 2L | 8997287..8997337 | 51..1 | 240 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8995651..8995776 | 319..444 | 99 | <- | Minus |
chr2L | 8994453..8994654 | 1260..1461 | 98 | <- | Minus |
chr2L | 8994712..8995044 | 927..1259 | 99 | <- | Minus |
chr2L | 8995839..8996033 | 124..318 | 98 | <- | Minus |
chr2L | 8996119..8996246 | 1..123 | 95 | Minus | |
chr2L | 8995106..8995587 | 445..926 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RB | 1..1335 | 70..1404 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RB | 1..1335 | 70..1404 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RB | 1..1335 | 70..1404 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RB | 1..1335 | 70..1404 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RB | 1..1335 | 70..1404 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RA | 39..1504 | 1..1461 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RA | 39..1504 | 1..1461 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RA | 43..1508 | 1..1461 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RA | 39..1504 | 1..1461 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alien-RA | 43..1508 | 1..1461 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8997210..8997337 | 1..123 | 94 | Minus | |
2L | 8995545..8995746 | 1260..1461 | 98 | <- | Minus |
2L | 8995804..8996136 | 927..1259 | 99 | <- | Minus |
2L | 8996198..8996679 | 445..926 | 98 | <- | Minus |
2L | 8996743..8996868 | 319..444 | 98 | <- | Minus |
2L | 8996931..8997125 | 124..318 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8997210..8997337 | 1..123 | 94 | Minus | |
2L | 8995545..8995746 | 1260..1461 | 98 | <- | Minus |
2L | 8995804..8996136 | 927..1259 | 99 | <- | Minus |
2L | 8996198..8996679 | 445..926 | 98 | <- | Minus |
2L | 8996743..8996868 | 319..444 | 98 | <- | Minus |
2L | 8996931..8997125 | 124..318 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8997210..8997337 | 1..123 | 94 | Minus | |
2L | 8995545..8995746 | 1260..1461 | 98 | <- | Minus |
2L | 8995804..8996136 | 927..1259 | 99 | <- | Minus |
2L | 8996198..8996679 | 445..926 | 98 | <- | Minus |
2L | 8996743..8996868 | 319..444 | 98 | <- | Minus |
2L | 8996931..8997125 | 124..318 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8995545..8995746 | 1260..1461 | 98 | <- | Minus |
arm_2L | 8995804..8996136 | 927..1259 | 99 | <- | Minus |
arm_2L | 8996198..8996679 | 445..926 | 98 | <- | Minus |
arm_2L | 8996743..8996868 | 319..444 | 98 | <- | Minus |
arm_2L | 8996931..8997125 | 124..318 | 98 | <- | Minus |
arm_2L | 8997210..8997337 | 1..123 | 94 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8995804..8996136 | 927..1259 | 99 | <- | Minus |
2L | 8996198..8996679 | 445..926 | 98 | <- | Minus |
2L | 8996743..8996868 | 319..444 | 98 | <- | Minus |
2L | 8996931..8997125 | 124..318 | 98 | <- | Minus |
2L | 8997210..8997337 | 1..123 | 94 | Minus | |
2L | 8995545..8995746 | 1260..1461 | 98 | <- | Minus |
Translation from 69 to 1403
> SD08021.hyp MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alien-PD | 444 | CG9556-PD | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PE | 444 | CG9556-PE | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PB | 444 | CG9556-PB | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PA | 444 | CG9556-PA | 1..444 | 1..444 | 2293 | 100 | Plus |
Rpn6-PC | 422 | CG10149-PC | 15..385 | 41..410 | 233 | 22.3 | Plus |
Translation from 69 to 1403
> SD08021.pep MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22104-PA | 444 | GF22104-PA | 1..444 | 1..444 | 2360 | 99.5 | Plus |
Dana\GF13517-PA | 422 | GF13517-PA | 78..385 | 102..410 | 209 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24040-PA | 444 | GG24040-PA | 1..444 | 1..444 | 2375 | 100 | Plus |
Dere\GG22404-PA | 439 | GG22404-PA | 95..402 | 102..410 | 211 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25117-PA | 444 | GH25117-PA | 1..444 | 1..444 | 2341 | 98.6 | Plus |
Dgri\GH22257-PA | 444 | GH22257-PA | 1..444 | 1..444 | 2341 | 98.6 | Plus |
Dgri\GH12954-PA | 106 | GH12954-PA | 1..106 | 339..444 | 523 | 96.2 | Plus |
Dgri\GH21149-PA | 421 | GH21149-PA | 77..384 | 102..410 | 196 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alien-PD | 444 | CG9556-PD | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PE | 444 | CG9556-PE | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PB | 444 | CG9556-PB | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PA | 444 | CG9556-PA | 1..444 | 1..444 | 2293 | 100 | Plus |
Rpn6-PC | 422 | CG10149-PC | 15..385 | 41..410 | 233 | 22.3 | Plus |
Rpn6-PB | 422 | CG10149-PB | 15..385 | 41..410 | 233 | 22.3 | Plus |
Rpn6-PA | 439 | CG10149-PA | 32..402 | 41..410 | 233 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11968-PA | 444 | GI11968-PA | 1..444 | 1..444 | 2322 | 97.7 | Plus |
Dmoj\GI18748-PA | 421 | GI18748-PA | 77..384 | 102..410 | 202 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25543-PA | 386 | GL25543-PA | 1..386 | 1..444 | 1778 | 79.8 | Plus |
Dper\GL10628-PA | 421 | GL10628-PA | 77..384 | 102..410 | 222 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21877-PA | 444 | GA21877-PA | 1..444 | 1..444 | 2353 | 98.9 | Plus |
Dpse\GA24424-PA | 421 | GA24424-PA | 77..384 | 102..410 | 222 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12583-PA | 444 | GM12583-PA | 1..444 | 1..444 | 2375 | 100 | Plus |
Dsec\GM20190-PA | 439 | GM20190-PA | 95..402 | 102..410 | 211 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22368-PA | 444 | GD22368-PA | 1..444 | 1..444 | 2375 | 100 | Plus |
Dsim\GD25662-PA | 328 | GD25662-PA | 18..291 | 138..410 | 209 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14108-PA | 444 | GJ14108-PA | 1..444 | 1..444 | 2324 | 98.2 | Plus |
Dvir\GJ21772-PA | 421 | GJ21772-PA | 77..384 | 102..410 | 201 | 22 | Plus |