Clone SD08161 Report

Gene	Date	Evidence
CG4118	2001-01-01	Release 2 assignment
CG4118	2002-01-03	Blastp of sequenced clone
CG4118	2003-01-01	Sim4 clustering to Release 3
nxf2	2008-04-29	Release 5.5 accounting
nxf2	2008-08-15	Release 5.9 accounting
nxf2	2008-12-18	5.12 accounting

Clone Sequence Records

SD08161.complete Sequence

2863 bp (2863 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075582

> SD08161.complete
ATTTCGTAGCGAGCGGTTGAGTTTGTAGTATAACGGAATTTTCATAACCT
TCGATAGATCGTAGAATGGCGATATTTTAGCTGGCAGTATACAAATCAGA
AAAGAAAAAAAACGGATATTTTGATTGGCTTACGATTTGAAATATAAGTG
GTAAATCCTTCTCTTTTGCAATGCCAAACCAGATGAGAGTGCTGGACTTT
GGCGATGGATCGGTGCCCATCCAGCTGGACTATCCAGATTCGAAGATCTT
CAGCAAGTGCAGTAGCTACGGCGATCGTGTTCCGGGTACCCATTGGAACG
AAATCACAGTGCACCATAAGGGCCGCCTGGAATACTCGCCAAATCCGGAG
CAGATAATCCTGGATGCCTTATACCAGGCGATAGACGGTGCGGACTTCTT
TCCGGTGTTCTACCAGCGTGGGAAGAACATGGATACCATGCTGGTCAGGA
ACTGCAAGGCGGCCATTGATAAGCTCTTCAAACAGCGGCTGTCCATTAAT
CTGAAAGGAGGCGCCTCCATACCCATCAGTATTCAACTGGGCGTAGCCCA
GTACCAAAGGCACCAGATAACTCCAACGTTCCACATCGCACGGGTGGTCA
CCAGACTGATGAAACAATTGATTCAAAGGGACGGTGTGGATGGGCTACTT
AATCTGGACAACTTTGGGAGTCATCCGGAGTTTAAAAACCTTGTGGTAAG
CCTGGGCAATCCGAGCATCCTGATGAACGTGTGCCAGGTAATACACAATG
ATGACAATGAACGCTTTCGGCTGAACGGATTTATATTGTCTAACAACCGC
ATTCGGGATATACGGCCCTTGACGCTACTCGCCAATGTGGACTACGCCCT
GCTCGACTTAAGGGGTAACAAGATTAAGTCAGCCGAACGTTTGTGCCGCG
CTCTAGAACAATTCCGGGCCAGAGAACTGCTTTTGGAGAACAACCCCATT
GTAAAGATATCCAACTTTCCGGCGAACATTAAATCGCTGGAGAGTAACTT
CGAGTTGGTGGATGGAAAGCCTTTCAACATGCTGCACAAGATCTTTTCTC
CTCTGGATGTGGAGATCGATTTGGAAGTGGATGGTGCGCGGATTGATACA
AATAACATGTGGAAGTTGCCCGAGTTTGAGAACAGCCAGCATTGGCATGC
CTTTATGATACCCGATCCCAGTCATGAATTTAACCAGGAGGTGTTCTTTG
ACTTCTTCTTTATTAGGCTCGATCCGACCCTGAGCAACTTTTATCCCTGC
TACTACAAGTACATTAACACGGAGCACGTTTTCCTCGTGCGCAATTGCTT
TGATCAGATTGCACACCTGGTAAACAATTGCAACCTCGAGATGACAATTC
CGACCGGTGATCGGATTTTTCGTTACTATCTGCGTATGAATGTGAGCACT
GTCAAGCAGCATCATGTCGATCCGGAGGAGTGCATACAGAAAGCTGTCTC
GCAATGTTATGTGGCACAGAACCGAATGCTTAACCTCGAACGGTTTCACT
CCAGAGAATGTCTAAAGGATGTGATGGTGTCACTAAGCTCGCCAAAGATT
TTAACCTACGTACTGTCGGTAGCGTCGCGGAAGTTCATGACCACCTGTTC
AGAGATCCGTTTGTGCCACAACAAGGTCCTTGTTCTGGATGGAGCCCATG
TCCTTGGTATGATGGGGTGCCTGAGAGCGGTGGATCTCAGTCACAACTGG
GTGCAGGATCTGTCAAGCATCCACAGTCTGGGCAACCTACCTCTGAAGTC
CCTGGTACTTCACGGAAATAAACTCTGCCGCAACTACAGACTGCCCAGCG
AATATGTCAGGGCGGTGAAGGAGGTGTTTCCACAGTTGACCACCTTGGAT
GGTGTGGACCTGCAGACGAATCCTGGCCAGTCGTTGCAGAAGAACTTTCT
TTGCGATACAGGTGCCTACGAGTTGGTGGGTGCCTTTCTTGAAAACTATC
TCCGGGAGTTCGAAAACGATGAGTTTCGCCACAATCTGTACAAGTATTAC
TCTGAAAACTCGATTTTTACTCTAACGTGCAACTACAACGTGGTTCAAAA
TCACCAGACTCCAAAGATATTGCAGCGTTTATCAAAGTACAACAGGCATG
CACGAAATCTGCGCAACAAGGACTATTCCAAGGCAAGCGATGGTGTGTTC
TTTGGCTGTACATATATTGTTGAAATACTTTTGCAACTGCCACGAGTCAC
CCACGACTTCCACTCCCTGCAGACGGACGTAATGCACTACAATGGTAAGG
GGGCGGTTATCTATGTTGCTGGTTTGCTACGGGATGAGCCACCTAGCACG
AGGAACGGCCACGGGAGCAAAACGGACATCGGTGGCGTTCTTTTGGGCTT
TAGCCGACAGTTTGTGGTCACGTTCGATGAGGCGAACTTGGGATTGGGAA
AGAGAGCTCGTCGCCTAAAGATCGCCAACGAACGTCTACACATAACGAAT
CCATCGAAAACTGCAATACGAAATGCTTTCAGTGTAAATTTTCCGGATCC
AAGTGAACGTCAGGCGGAAGAGGATTCCCTGGATGTGAAGGATCACAAGC
TCCTGCTCTTTCAAGAGGTAACCGGCCTCATTTCCACTTGGGTCACATCG
ATTGTGGAGGAAGCCGATTGGGACTTTGAGCGAGCCCTTAAATTGTTTAT
TCAGAAGAATGCTGATCACGAAATCCCAGATCTAGCATTCGCCTAGAATA
TGTGATCTCTATATATGTGATCATATACTTTTGTAAAATAAGTGGTGCTT
TCAATACCTCTGTTTCCTCTTTCGTTATAAATACTGAACCTGTGTTGCGA
ATTCGACATCCCAATAAAACTACCTTGAATTACCAATAAAAAGTAAAAAA
AAAAAAAAAAAAA

SD08161.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:57

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
nxf2-RA	2859	nxf2-RA	1..2846	1..2846	14230	100	Plus
nxf2-RB	2765	nxf2-RB	31..2760	117..2846	13605	99.8	Plus
nxf2.a	2704	nxf2.a	1166..2704	1306..2844	7695	100	Plus
nxf2.a	2704	nxf2.a	25..1167	117..1259	5670	99.7	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:40:13

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr3L	24539361	chr3L	16567149..16568282	2391..1258	5655	99.9	Minus
chr3L	24539361	chr3L	16568903..16569360	872..415	2290	100	Minus
chr3L	24539361	chr3L	16566626..16567080	2844..2390	2275	100	Minus
chr3L	24539361	chr3L	16569419..16569718	416..117	1440	98.7	Minus
chrU	10048995	chrU	7285084..7285311	2482..2709	1020	96.5	Plus
chr4	1351717	chr4	1327376..1327603	2709..2482	1020	96.5	Minus
chr4	1351717	chr4	1340358..1340585	2709..2482	1020	96.5	Minus
chrU	10048995	chrU	7178486..7178712	2483..2709	1015	96.5	Plus
chr3L	24539361	chr3L	16568504..16568651	1157..1010	740	100	Minus
chrU	10048995	chrU	7177978..7178142	2080..2244	735	96.4	Plus
chr3L	24539361	chr3L	16568712..16568852	1011..871	705	100	Minus
chrU	10048995	chrU	9958640..9958789	2709..2560	705	98	Minus
chrU	10048995	chrU	7178321..7178481	2080..2240	700	95.7	Plus
chrU	10048995	chrU	6940553..6940703	2560..2709	660	97.4	Plus
chrU	10048995	chrU	7284660..7284824	2080..2244	660	93.3	Plus
chr4	1351717	chr4	1327863..1328027	2244..2080	660	93.3	Minus
chr4	1351717	chr4	1340845..1341009	2244..2080	660	93.3	Minus
chr3L	24539361	chr3L	16569927..16570056	128..1	585	98.5	Minus
chr3L	24539361	chr3L	16568343..16568445	1259..1157	515	100	Minus
chrU	10048995	chrU	7284824..7284909	2482..2567	370	95.3	Plus
chr4	1351717	chr4	1327778..1327863	2567..2482	370	95.3	Minus
chr4	1351717	chr4	1340760..1340845	2567..2482	370	95.3	Minus
chrU	10048995	chrU	7178142..7178227	2482..2567	325	91.9	Plus
chrU	10048995	chrU	7285003..7285062	2083..2142	270	96.7	Plus
chr4	1351717	chr4	1327625..1327684	2142..2083	270	96.7	Minus
chr4	1351717	chr4	1340607..1340666	2142..2083	270	96.7	Minus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:52:00 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:40:10

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3L	28110227	3L	16577382..16578515	2391..1258	5670	100	Minus
3L	28110227	3L	16579136..16579593	872..415	2290	100	Minus
3L	28110227	3L	16576857..16577313	2846..2390	2285	100	Minus
3L	28110227	3L	16579652..16579951	416..117	1455	99	Minus
X	23542271	X	12411..12638	2482..2709	1020	96.5	Plus
X	23542271	X	23558..23785	2482..2709	1020	96.5	Plus
X	23542271	X	35064..35291	2482..2709	1020	96.5	Plus
X	23542271	X	46735..46962	2482..2709	1020	96.5	Plus
4	1348131	4	1323790..1324017	2709..2482	1020	96.5	Minus
4	1348131	4	1336772..1336999	2709..2482	1020	96.5	Minus
Ymm	880023	Ymm	812486..812712	2483..2709	1015	96.5	Plus
3L	28110227	3L	16578737..16578884	1157..1010	740	100	Minus
Ymm	880023	Ymm	811978..812142	2080..2244	735	96.4	Plus
3L	28110227	3L	16578945..16579085	1011..871	705	100	Minus
Ymm	880023	Ymm	549972..550121	2709..2560	705	98	Minus
Ymm	880023	Ymm	812321..812481	2080..2240	700	95.7	Plus
X	23542271	X	11987..12151	2080..2244	660	93.3	Plus
X	23542271	X	23134..23298	2080..2244	660	93.3	Plus
X	23542271	X	34640..34804	2080..2244	660	93.3	Plus
X	23542271	X	46311..46475	2080..2244	660	93.3	Plus
4	1348131	4	1324277..1324441	2244..2080	660	93.3	Minus
4	1348131	4	1337259..1337423	2244..2080	660	93.3	Minus
Ymm	880023	Ymm	848005..848155	2560..2709	660	97.4	Plus
3L	28110227	3L	16580160..16580287	128..1	640	100	Minus
3L	28110227	3L	16578576..16578678	1259..1157	515	100	Minus
X	23542271	X	12151..12236	2482..2567	370	95.3	Plus
X	23542271	X	23298..23383	2482..2567	370	95.3	Plus
X	23542271	X	34804..34889	2482..2567	370	95.3	Plus
X	23542271	X	46475..46560	2482..2567	370	95.3	Plus
4	1348131	4	1324192..1324277	2567..2482	370	95.3	Minus
4	1348131	4	1337174..1337259	2567..2482	370	95.3	Minus
Ymm	880023	Ymm	812142..812227	2482..2567	325	91.9	Plus
X	23542271	X	34983..35042	2083..2142	270	96.7	Plus
X	23542271	X	46654..46713	2083..2142	270	96.7	Plus
X	23542271	X	12330..12389	2083..2142	270	96.7	Plus
X	23542271	X	23477..23536	2083..2142	270	96.7	Plus
4	1348131	4	1324039..1324098	2142..2083	270	96.7	Minus
4	1348131	4	1337021..1337080	2142..2083	270	96.7	Minus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:01

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3L	28103327	3L	16570482..16571615	2391..1258	5670	100	Minus
3L	28103327	3L	16572236..16572693	872..415	2290	100	Minus
3L	28103327	3L	16569957..16570413	2846..2390	2285	100	Minus
3L	28103327	3L	16572752..16573051	416..117	1455	99	Minus
X	23527363	X	64840..65067	2482..2709	1020	96.4	Plus
X	23527363	X	76511..76738	2482..2709	1020	96.4	Plus
X	23527363	X	53334..53561	2482..2709	1020	96.4	Plus
X	23527363	X	42187..42414	2482..2709	1020	96.4	Plus
4	1331231	4	1319872..1320099	2709..2482	1020	96.4	Minus
4	1331231	4	1306890..1307117	2709..2482	1020	96.4	Minus
Unimproved_211000022266637_199_804	605	Unimproved_211000022266637_199_804	72..260	2709..2521	855	96.8	Minus
3L	28103327	3L	16571837..16571984	1157..1010	740	100	Minus
3L	28103327	3L	16572045..16572185	1011..871	705	100	Minus
X	23527363	X	76087..76251	2080..2244	660	93.3	Plus
X	23527363	X	64416..64580	2080..2244	660	93.3	Plus
X	23527363	X	52910..53074	2080..2244	660	93.3	Plus
X	23527363	X	41763..41927	2080..2244	660	93.3	Plus
4	1331231	4	1320359..1320523	2244..2080	660	93.3	Minus
4	1331231	4	1307377..1307541	2244..2080	660	93.3	Minus
3L	28103327	3L	16573260..16573387	128..1	640	100	Minus
Unimproved_211000022255446_50_552	502	Unimproved_211000022255446_50_552	53..184	2578..2709	600	96.9	Plus
3L	28103327	3L	16571676..16571778	1259..1157	515	100	Minus
X	23527363	X	76251..76336	2482..2567	370	95.3	Plus
X	23527363	X	64580..64665	2482..2567	370	95.3	Plus
X	23527363	X	53074..53159	2482..2567	370	95.3	Plus
X	23527363	X	41927..42012	2482..2567	370	95.3	Plus
4	1331231	4	1320274..1320359	2567..2482	370	95.3	Minus
4	1331231	4	1307292..1307377	2567..2482	370	95.3	Minus
X	23527363	X	76430..76489	2083..2142	270	96.6	Plus
X	23527363	X	64759..64818	2083..2142	270	96.6	Plus
X	23527363	X	53253..53312	2083..2142	270	96.6	Plus
X	23527363	X	42106..42165	2083..2142	270	96.6	Plus
4	1331231	4	1320121..1320180	2142..2083	270	96.6	Minus
4	1331231	4	1307139..1307198	2142..2083	270	96.6	Minus

Blast to na_te.dros performed 2019-03-15 14:40:11

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
TART-A	13424	TART-A 13424bp	9091..9742	2080..2709	1569	74.2	Plus
TART-A	13424	TART-A 13424bp	9255..9340	2482..2567	394	95.3	Plus
TART-A	13424	TART-A 13424bp	9431..9493	2080..2142	288	95.2	Plus

SD08161.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:41:23 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr3L	16568504..16568650	1011..1157	100	<-	Minus
chr3L	16568713..16568850	873..1010	100	<-	Minus
chr3L	16567461..16568280	1260..2079	99	<-	Minus
chr3L	16568343..16568444	1158..1259	100	<-	Minus
chr3L	16568903..16569358	417..872	100	<-	Minus
chr3L	16569419..16569707	128..416	99	<-	Minus
chr3L	16569928..16570056	1..127	98		Minus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:04:14 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RB	1..2526	171..2696	100		Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:37 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RB	1..2526	171..2696	100		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:38:30 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	1..2526	171..2696	100		Plus

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:38 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RB	1..2526	171..2696	100		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:47 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	1..2526	171..2696	100		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:18:05 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	1..2844	1..2844	100		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:37 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	1..2844	1..2844	100		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:38:30 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	20..2863	1..2844	100		Plus

Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:38 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	1..2844	1..2844	100		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:47 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
nxf2-RA	20..2863	1..2844	100		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:23 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	16578576..16578677	1158..1259	100	<-	Minus
3L	16578737..16578883	1011..1157	100	<-	Minus
3L	16578946..16579083	873..1010	100	<-	Minus
3L	16576859..16577312	2391..2844	100	<-	Minus
3L	16577383..16578513	1260..2390	100	<-	Minus
3L	16579136..16579591	417..872	100	<-	Minus
3L	16579652..16579940	128..416	100	<-	Minus
3L	16580161..16580287	1..127	100		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:23 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	16578576..16578677	1158..1259	100	<-	Minus
3L	16578737..16578883	1011..1157	100	<-	Minus
3L	16578946..16579083	873..1010	100	<-	Minus
3L	16576859..16577312	2391..2844	100	<-	Minus
3L	16577383..16578513	1260..2390	100	<-	Minus
3L	16579136..16579591	417..872	100	<-	Minus
3L	16579652..16579940	128..416	100	<-	Minus
3L	16580161..16580287	1..127	100		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:23 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	16578576..16578677	1158..1259	100	<-	Minus
3L	16578737..16578883	1011..1157	100	<-	Minus
3L	16578946..16579083	873..1010	100	<-	Minus
3L	16576859..16577312	2391..2844	100	<-	Minus
3L	16577383..16578513	1260..2390	100	<-	Minus
3L	16579136..16579591	417..872	100	<-	Minus
3L	16579652..16579940	128..416	100	<-	Minus
3L	16580161..16580287	1..127	100		Minus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:38:30 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_3L	16573261..16573387	1..127	100		Minus
arm_3L	16569959..16570412	2391..2844	100	<-	Minus
arm_3L	16570483..16571613	1260..2390	100	<-	Minus
arm_3L	16571676..16571777	1158..1259	100	<-	Minus
arm_3L	16571837..16571983	1011..1157	100	<-	Minus
arm_3L	16572046..16572183	873..1010	100	<-	Minus
arm_3L	16572236..16572691	417..872	100	<-	Minus
arm_3L	16572752..16573040	128..416	100	<-	Minus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:00 Download gff for SD08161.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	16569959..16570412	2391..2844	100	<-	Minus
3L	16570483..16571613	1260..2390	100	<-	Minus
3L	16571676..16571777	1158..1259	100	<-	Minus
3L	16571837..16571983	1011..1157	100	<-	Minus
3L	16572046..16572183	873..1010	100	<-	Minus
3L	16572236..16572691	417..872	100	<-	Minus
3L	16572752..16573040	128..416	100	<-	Minus
3L	16573261..16573387	1..127	100		Minus

SD08161.pep Sequence

Translation from 170 to 2695

> SD08161.pep
MPNQMRVLDFGDGSVPIQLDYPDSKIFSKCSSYGDRVPGTHWNEITVHHK
GRLEYSPNPEQIILDALYQAIDGADFFPVFYQRGKNMDTMLVRNCKAAID
KLFKQRLSINLKGGASIPISIQLGVAQYQRHQITPTFHIARVVTRLMKQL
IQRDGVDGLLNLDNFGSHPEFKNLVVSLGNPSILMNVCQVIHNDDNERFR
LNGFILSNNRIRDIRPLTLLANVDYALLDLRGNKIKSAERLCRALEQFRA
RELLLENNPIVKISNFPANIKSLESNFELVDGKPFNMLHKIFSPLDVEID
LEVDGARIDTNNMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRL
DPTLSNFYPCYYKYINTEHVFLVRNCFDQIAHLVNNCNLEMTIPTGDRIF
RYYLRMNVSTVKQHHVDPEECIQKAVSQCYVAQNRMLNLERFHSRECLKD
VMVSLSSPKILTYVLSVASRKFMTTCSEIRLCHNKVLVLDGAHVLGMMGC
LRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHGNKLCRNYRLPSEYVRAVK
EVFPQLTTLDGVDLQTNPGQSLQKNFLCDTGAYELVGAFLENYLREFEND
EFRHNLYKYYSENSIFTLTCNYNVVQNHQTPKILQRLSKYNRHARNLRNK
DYSKASDGVFFGCTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIYVA
GLLRDEPPSTRNGHGSKTDIGGVLLGFSRQFVVTFDEANLGLGKRARRLK
IANERLHITNPSKTAIRNAFSVNFPDPSERQAEEDSLDVKDHKLLLFQEV
TGLISTWVTSIVEEADWDFERALKLFIQKNADHEIPDLAFA*

SD08161.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:34:28

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF10521-PA	836	GF10521-PA	1..836	5..841	2633	59.3	Plus
Dana\GF20263-PA	602	GF20263-PA	71..469	357..767	228	25.1	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:34:29

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG15872-PA	841	GG15872-PA	1..841	1..841	4132	90.5	Plus
Dere\GG18897-PA	674	GG18897-PA	110..539	321..767	218	22	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:34:29

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH18649-PA	641	GH18649-PA	109..640	321..841	241	23.8	Plus
Dgri\GH12051-PA	686	GH12051-PA	112..550	321..767	207	22.5	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:38

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
nxf2-PB	841	CG4118-PB	1..841	1..841	4437	100	Plus
nxf2-PA	841	CG4118-PA	1..841	1..841	4437	100	Plus
nxf2-PC	825	CG4118-PC	1..825	1..841	4320	98.1	Plus
sbr-PA	672	CG1664-PA	109..538	321..767	212	22.6	Plus
sbr-PC	536	CG1664-PC	6..402	357..767	209	23.3	Plus
sbr-PB	536	CG1664-PB	6..402	357..767	209	23.3	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:34:30

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI16857-PA	842	GI16857-PA	11..841	6..840	1937	47	Plus
Dmoj\GI15802-PA	1028	GI15802-PA	502..876	357..733	195	24.2	Plus

Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:34:31

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dper\GL12469-PA	853	GL12469-PA	5..852	4..840	2375	51.9	Plus
Dper\GL17982-PA	655	GL17982-PA	82..534	171..628	1058	47	Plus
Dper\GL17982-PA	655	GL17982-PA	8..82	7..81	274	62.7	Plus
Dper\GL17982-PA	655	GL17982-PA	529..655	685..841	271	39.5	Plus
Dper\GL14296-PA	543	GL14296-PA	207..497	419..705	203	24.2	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:34:31

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA27518-PA	854	GA27518-PA	5..853	3..840	2373	51.7	Plus
Dpse\GA28357-PA	641	GA28357-PA	82..641	171..841	1073	39	Plus
Dpse\GA28357-PA	641	GA28357-PA	8..82	7..81	289	64	Plus
Dpse\GA14084-PA	686	GA14084-PA	207..547	419..767	209	24.4	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:34:32

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM24390-PA	841	GM24390-PA	1..841	1..841	4359	95.8	Plus
Dsec\GM11283-PA	672	GM11283-PA	109..538	321..767	212	22.8	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:34:32

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\GD12461-PA	821	GD12461-PA	1..821	1..841	4195	93.3	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:34:33

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ12607-PA	840	GJ12607-PA	9..839	4..840	2064	48.3	Plus
Dvir\GJ18656-PA	673	GJ18656-PA	119..671	321..840	215	22.8	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:34:34

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK14467-PA	848	GK14467-PA	9..843	4..836	1975	46.8	Plus
Dwil\GK16608-PA	847	GK16608-PA	11..842	6..836	1948	46.3	Plus
Dwil\GK16163-PA	691	GK16163-PA	108..557	305..767	250	25.2	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:34:34

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\GE22211-PA	841	GE22211-PA	1..841	1..841	4024	88.1	Plus
Dyak\GE15368-PA	678	GE15368-PA	115..544	321..767	225	23	Plus
Dyak\GE21988-PA	1425	GE21988-PA	225..532	421..726	174	24.2	Plus

SD08161.hyp Sequence

Translation from 170 to 2695

> SD08161.hyp
MPNQMRVLDFGDGSVPIQLDYPDSKIFSKCSSYGDRVPGTHWNEITVHHK
GRLEYSPNPEQIILDALYQAIDGADFFPVFYQRGKNMDTMLVRNCKAAID
KLFKQRLSINLKGGASIPISIQLGVAQYQRHQITPTFHIARVVTRLMKQL
IQRDGVDGLLNLDNFGSHPEFKNLVVSLGNPSILMNVCQVIHNDDNERFR
LNGFILSNNRIRDIRPLTLLANVDYALLDLRGNKIKSAERLCRALEQFRA
RELLLENNPIVKISNFPANIKSLESNFELVDGKPFNMLHKIFSPLDVEID
LEVDGARIDTNNMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRL
DPTLSNFYPCYYKYINTEHVFLVRNCFDQIAHLVNNCNLEMTIPTGDRIF
RYYLRMNVSTVKQHHVDPEECIQKAVSQCYVAQNRMLNLERFHSRECLKD
VMVSLSSPKILTYVLSVASRKFMTTCSEIRLCHNKVLVLDGAHVLGMMGC
LRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHGNKLCRNYRLPSEYVRAVK
EVFPQLTTLDGVDLQTNPGQSLQKNFLCDTGAYELVGAFLENYLREFEND
EFRHNLYKYYSENSIFTLTCNYNVVQNHQTPKILQRLSKYNRHARNLRNK
DYSKASDGVFFGCTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIYVA
GLLRDEPPSTRNGHGSKTDIGGVLLGFSRQFVVTFDEANLGLGKRARRLK
IANERLHITNPSKTAIRNAFSVNFPDPSERQAEEDSLDVKDHKLLLFQEV
TGLISTWVTSIVEEADWDFERALKLFIQKNADHEIPDLAFA*

SD08161.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:01

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
nxf2-PB	841	CG4118-PB	1..841	1..841	4437	100	Plus
nxf2-PA	841	CG4118-PA	1..841	1..841	4437	100	Plus
nxf2-PC	825	CG4118-PC	1..825	1..841	4320	98.1	Plus
sbr-PA	672	CG1664-PA	109..538	321..767	212	22.6	Plus

Library:	SD
Tissue Source:	Drosophila melanogaster Schneider L2 cell culture
Created by:	Ling Hong
Date Registered:	1999-02-25
Comments:	Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:	81
Well:	61
Vector:	pOT2
Associated Gene/Transcript	nxf2-RA
Protein status:	SD08161.pep: gold
Preliminary Size:	2778
Sequenced Size:	2863

Clone SD08161 Report

Clone and Library Details

Associated Genes

Clone Sequence Records

SD08161.complete Sequence

SD08161.complete Blast Records

SD08161.complete Sim4 Records

SD08161.pep Sequence

SD08161.pep Blast Records

SD08161.hyp Sequence

SD08161.hyp Blast Records