BDGP Sequence Production Resources |
Search the DGRC for SD08423
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 84 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | tth-RB |
Protein status: | SD08423.pep: gold |
Preliminary Size: | 2931 |
Sequenced Size: | 2946 |
Gene | Date | Evidence |
---|---|---|
CG12175 | 2001-10-10 | Blastp of sequenced clone |
CG12175 | 2003-01-01 | Sim4 clustering to Release 3 |
tth | 2008-04-29 | Release 5.5 accounting |
tth | 2008-08-15 | Release 5.9 accounting |
tth | 2008-12-18 | 5.12 accounting |
2946 bp (2946 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061619
> SD08423.complete TGAAAACGACGTTAATATTTCTGATCAATTAAACAATTGGAAAATCCGGC CGCAGATCGCGATCTAAACGTATCGCCCTCGCCACGCCCACTGCCGCCCA CGCCCCCTGGCGCGGGGTCACATCGATAGAGAGCTTTGCGTGTGTGTGTG TGTGCGTGCGTGTATGTGTCGGTCGAGAGGAGAGGTGGAAGACGAAGAAG AGTAAAAAAAACAGGCAGCGAAAAGCGATAAGAAACGGAACACAACACAC TGGAAAAAAATTGCGATAAGAAACGGGGCGGAGCGGAGCGGAAATTGCCA AGACTCTGGGATGGATTAGCGGCACAGCCGGACTCTGAGGTTAGCCAACA GTGGGATTAGGACCAGGAACAGCCATGTCCTCCGCCGTTAACATCCAGAT CGTCTCTATGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCA GCTACCGGGAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGC AGCGAACGGCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGC CCAGAACCACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCT TCCGGCAGGGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGC CGTCGTCAGTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTT CCAGGCGCTACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATC TGGGACTGAGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAAT AGCCTGGCCAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGG AGCCGCGCCGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATT TTAATGGAGCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGC GGTGATACATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCA CCAGCACCAGCAGCAGGCCGTCAAAGAGGAGCTTTTGCCCAAGGAGTGGT TCTACGATGACATGGATATGAACGATGTGGACTCGCTGGAGGAGCCCAAA TCGCCGGCGGATGATGAGTACGATTATGATCCGCGCTATGGTAACAAAAA AAGGCGCAAGCGGCGACCAGGCAAGCGAGGTGGAGATTCCGGCGGCGGTG GTGGTGGAGGAGGCGCCGGCGGTGGCGGCAATTCCGGCGGTAGCTCCAGC TCGCGGAGACGCAGTGCAGCGGCCAGGTCGCGTATCACAACGACGGATGC GGCGCTGGACGCATCGCTGGAGGCCATTGAATCTGGCGAGAGTGTGCCAG GCAGCAATGGAGGACCAATCTCCAGCGGAGGCATCCTAAGCGGCAGCCTG GGAGCAGGCTTAGCGGGAGTTTCGGGATCCGGCGGCGGAGGAGGAGCATC GGGTGCTTCGGCCAACAGCCGCAGATCGCGGGGAGCTGGAACACGTGGCA GGCGACGAGCCAAGGGGCCAAATAGCGCCGTTGGAGCGTCATGCGATCCG ACAAGTCCCGGCATGGTCATCGAGCCACCATCCTTCGAGAGTGCCGCTGC TGCGGTGGGCGTGGTCGAGGACGCGAACGCCCATCTGCGCAACTATCGGA AGTATCTGTAACCGCTCTATCAGCAACTAACTGGACGTGTAATCAATCAA AGCCTTGTTTTTCGCAATGTTTTCTCGCCTATTGAATCGACCTACTTTTT CGCACATAATTTAAATATAGTTTTTAAGCCTTAGTTGATCACTGTTTGTT GCCCCCCTCCGACAAAAGGATAAAAGCCAAGCAAGAAATGAAAGAAAGGA AACAAATACATTGTGGACCAGGGACAGAAACAGGATTAGAATCAGGATAA CGATCAGAACCGCGCACCAGGCCGTAGCCAATACAATTCCAATGTTTCGC CTCTCTTAACTTTACGTTCCCATAGCCAATTGATTGTTGTTTTTTAAACT AGCAATGGACTGGTGAACTTCTACTATAGGATAACTTGAGCGGAAACTTA TGGATGTAGCAAATATTCTTCGAGCAATTTTGTAATGTAGGAAACCCTTT AGGCCATCAATTATTAACGTTGTATAAGTTAGACAATGAATTTAAAAAGA ACCTTTTTCGTCATCGTTAGGCAATTCGTAATCAATTATTTTCGGGCATC ATCTATGCCATAAGTGAAACAGCACAATTTGAATTATATATAGTTTTGCA ATACACGACCATATTTCACATCTGGTTTCCGAAGTTTTGCTTAGAGCAGT TCGCCAGACCATTGCATTATATTGTACATTATATATATGGGTGTACAGAC ATTATATACATATATATATATATATACATACTTGCATGCATTGTATTTGC GACTCTACTTAAGGCAAGTCCACCTTTTGGACTGGCTCTCCACCTAATCG CAATCTCTCGGTTTCTGTTGCTGCATGTTCTTAATACTATTTCACCTAGC TCCCCACCCCTCCCCACATATTATATTCAATTTTTTTTATTTAACCAAAA TTTTAGTTAAAAAAGAGACAATTCAGATTGTAATCTATTTAGGCAAGTGG TAGGGTATCTCTAGCATTAGAAGAAGCTAAAAGTAAAAACAATTTCGTAA AACCAAAATTTTTTCTCTAGGATCATAATTATTAAGCTGAGCTAAAAACG AAAACAAATTTTAACTAACTAAGAAGGGACAAAATTGAAATAAGATCAAA AAAGGAAAACATGTACATTTTGGAAGAAAAATCAAAGTCCACAAAATTTT AACGAATGAGAGGCAAAAAATCAGACAAAAATGAACCACAAGAGAATGAA AAAAAAAAACAAAAATGGAAATAGGTTTCTAAGATGTTTTAATATATTTT GTAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
1360 | 3409 | 1360 1360 3409bp | 94..215 | 2280..2403 | 119 | 57.3 | Plus |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 2003..2090 | 2605..2689 | 117 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13503929..13505590 | 1245..2908 | 97 | == | Minus |
chrX | 13505646..13506155 | 680..1189 | 92 | <- | Minus |
chrX | 13506412..13507090 | 1..679 | 94 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..1287 | 375..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..1287 | 375..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..1287 | 375..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..1287 | 375..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..1287 | 375..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..2906 | 1..2908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..2906 | 1..2908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 50..2955 | 1..2908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 1..2906 | 1..2908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tth-RB | 50..2955 | 1..2908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13613193..13615419 | 680..2908 | 99 | <- | Minus |
X | 13615676..13616354 | 1..679 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13613193..13615419 | 680..2908 | 99 | <- | Minus |
X | 13615676..13616354 | 1..679 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13613193..13615419 | 680..2908 | 99 | <- | Minus |
X | 13615676..13616354 | 1..679 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13507226..13509452 | 680..2908 | 99 | <- | Minus |
arm_X | 13509709..13510387 | 1..679 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13621291..13623517 | 680..2908 | 99 | <- | Minus |
X | 13623774..13624452 | 1..679 | 99 | Minus |
Translation from 374 to 1660
> SD08423.pep MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSERRHRLP FLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKM YSRFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSL TLNMLTGGGAAPAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKD SQQQQHQQHQHQQQAVKEELLPKEWFYDDMDMNDVDSLEEPKSPADDEYD YDPRYGNKKRRKRRPGKRGGDSGGGGGGGGAGGGGNSGGSSSSRRRSAAA RSRITTTDAALDASLEAIESGESVPGSNGGPISSGGILSGSLGAGLAGVS GSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDPTSPGMVIE PPSFESAAAAVGVVEDANAHLRNYRKYL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21813-PA | 441 | GF21813-PA | 1..441 | 1..428 | 1274 | 74 | Plus |
Dana\GF11022-PA | 812 | GF11022-PA | 12..101 | 9..97 | 351 | 65.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19497-PA | 430 | GG19497-PA | 1..430 | 1..428 | 2168 | 96.7 | Plus |
Dere\GG10866-PA | 497 | GG10866-PA | 12..184 | 9..231 | 344 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17804-PA | 423 | GH17804-PA | 1..423 | 1..428 | 1151 | 59.5 | Plus |
Dgri\GH21439-PA | 504 | GH21439-PA | 2..95 | 4..97 | 369 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tth-PC | 428 | CG12175-PC | 1..428 | 1..428 | 2201 | 100 | Plus |
tth-PB | 428 | CG12175-PB | 1..428 | 1..428 | 2201 | 100 | Plus |
d4-PA | 497 | CG2682-PA | 12..275 | 9..317 | 398 | 34.9 | Plus |
d4-PD | 496 | CG2682-PD | 12..333 | 9..359 | 397 | 32.4 | Plus |
d4-PC | 495 | CG2682-PC | 12..332 | 9..359 | 392 | 32 | Plus |
ftz-f1-PC | 803 | CG4059-PC | 13..255 | 95..360 | 166 | 26.9 | Plus |
ftz-f1-PA | 803 | CG4059-PA | 13..255 | 95..360 | 166 | 26.9 | Plus |
ftz-f1-PD | 853 | CG4059-PD | 13..255 | 95..360 | 166 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15144-PA | 409 | GI15144-PA | 1..409 | 1..428 | 1134 | 62.8 | Plus |
Dmoj\GI20660-PA | 492 | GI20660-PA | 2..95 | 4..97 | 367 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22648-PA | 433 | GL22648-PA | 1..318 | 1..324 | 1112 | 81 | Plus |
Dper\GL11042-PA | 567 | GL11042-PA | 61..161 | 1..97 | 350 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11454-PA | 433 | GA11454-PA | 1..318 | 1..324 | 1113 | 81 | Plus |
Dpse\GA15428-PA | 507 | GA15428-PA | 1..101 | 1..97 | 351 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17603-PA | 428 | GM17603-PA | 1..428 | 1..428 | 2190 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19004-PA | 404 | GJ19004-PA | 1..404 | 1..428 | 1185 | 63.6 | Plus |
Dvir\GJ20409-PA | 490 | GJ20409-PA | 2..95 | 4..97 | 369 | 64.9 | Plus |
Translation from 374 to 1660
> SD08423.hyp MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSERRHRLP FLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKM YSRFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSL TLNMLTGGGAAPAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKD SQQQQHQQHQHQQQAVKEELLPKEWFYDDMDMNDVDSLEEPKSPADDEYD YDPRYGNKKRRKRRPGKRGGDSGGGGGGGGAGGGGNSGGSSSSRRRSAAA RSRITTTDAALDASLEAIESGESVPGSNGGPISSGGILSGSLGAGLAGVS GSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDPTSPGMVIE PPSFESAAAAVGVVEDANAHLRNYRKYL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tth-PC | 428 | CG12175-PC | 1..428 | 1..428 | 2201 | 100 | Plus |
tth-PB | 428 | CG12175-PB | 1..428 | 1..428 | 2201 | 100 | Plus |
d4-PA | 497 | CG2682-PA | 12..275 | 9..317 | 398 | 34.9 | Plus |
d4-PD | 496 | CG2682-PD | 12..333 | 9..359 | 397 | 32.4 | Plus |
d4-PC | 495 | CG2682-PC | 12..332 | 9..359 | 392 | 32 | Plus |